RNA 3D Hub

JAR3D Query RF00210-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 20 Internal loop

Column numbers: 189-196, 211-212 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GAACUCCU*AC   23

    
    GAACUCCC*AC   14

    
    GAACCCCU*AC   10

    
    GAACACCU*AC    6

    
    GAAUCCCU*AC    6

    
    GAACACCC*AC    4

    
    GAAUUCCU*AC    4

    
    GAACCCCC*AC    2

    
    GAACUCCG*AC    2

    
    GACCCCCC*AC    2

    
    GACCUCCC*AC    2

    
    GACCUCCU*AC    2

    
    GAGCUCCC*AC    2

    
    GAAACCCC*AC    1

    
    GAACCCCA*AC    1

    
    GAACCCCC*GC    1

    
    GAACUCCU*GC    1

    
    GACUCCCC*AC    1

    
    GAGCUCCU*AC    1

    
    GAUCCCCC*GC    1

    
    GAUCCCCU*AC    1

    
    GAUCUCCC*AC    1

    
    GAUUUCCC*AC    1

    
    GGCUUCCU*AC    1

    
    GAACAAC-*GC    1

    
    GAAUCAC-*GC    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

78.26 9.70 4 3

2

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

66.30 3.05 6 3

3

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

59.78 5.11 7 3

4

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

20.65 -17.69 6 3

5

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

9.78 -24.26 6 4

Minor groove platform

6

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

4.35 -25.19 7 4

7

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

2.17 -41.36 4 3

8

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

2.17 -43.59 4 3

Major groove intercalation

9

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

2.17 -45.10 7 3

10

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -28.32 6 4

11

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -28.55 8 4

12

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -43.92 6 5

13

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -47.68 6 3

14

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -51.38 6 5

15

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -58.63 8 4

Major groove intercalation

16

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -60.22 7 4

17

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -62.56 8 4

SSU/LSU pseudoknot

18

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -62.98 8 5

19

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -66.48 7 4

20

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -70.03 7 4

21

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -72.05 9 5

22

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -83.82 10 7

23

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -85.19 7 7

24

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -85.75 8 5

25

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -88.38 9 5

26

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -95.97 9 7

Reverse kink-turn related

27

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -97.71 10 6

28

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -98.63 6 5

Kink-turn related

29

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -98.90 8.5 5

cWH basepair with bulged bases

30

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -100.55 11 7

31

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -100.92 6 3

32

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -102.16 9 6

33

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -102.66 11 7

34

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -107.88 7 3

35

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -109.74 8 6

Vitamin B12 Aptamer

36

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -111.99 9 6

37

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -112.97 8 6

38

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -113.53 10 7

39

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -115.86 10 7

40

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -117.88 10 7

41

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -119.84 8 4

42

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -120.21 8 7

43

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -122.16 10 6

44

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -123.41 8 4

45

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -126.37 8 6

46

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -128.30 7 6

47

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -130.46 10 7

48

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -131.31 8 7

49

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -138.72 8 6

50

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -139.13 11 7

Pseudoknot

51

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -141.69 7 4

52

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -143.04 11 8

53

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -145.37 7 5

54

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -145.82 8 7

Reverse turn

55

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -155.04 7 4

56

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -156.00 11 8

57

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -158.21 8 7

58

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -159.17 9 7

59

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -160.46 9 5

60

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -161.05 8 7

61

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -161.07 6 5

62

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -161.97 8 6

63

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -163.52 8 5

Reverse kink-turn related

64

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -166.46 7 5

65

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -168.53 8 5

Intercalated tWH

66

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -169.36 8 6

Pseudoknot

67

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -175.61 8 5

68

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -176.09 11 8

69

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -177.15 6 5

tSH-tHW

70

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -177.48 8 6

71

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -178.06 8 6

72

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -178.44 12 9

73

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -181.63 9 7

74

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -182.11 9 7

75

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -182.31 11 7

76

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -184.72 12 10

77

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -185.01 9 6

78

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -190.34 9 7

79

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -191.53 11 9

80

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -195.01 8 6

180 degree turn

81

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -195.08 9 7

82

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -195.26 10 8

83

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -196.24 8 5

84

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -199.62 8 6

85

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -201.80 8 4

86

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -204.39 10 8

87

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -205.46 9 7

88

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -206.43 7 6

89

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -206.53 9 7

90

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -208.07 5 5

91

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -210.06 13 11

92

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -211.71 12 10

93

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -214.30 14 10

94

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -214.32 14 12

95

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -214.96 12 10

96

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -215.18 11 9

97

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -215.44 9 6

98

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -216.18 6 5

99

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -217.05 12 10

100

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -219.13 5 3

101

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -220.44 12 11

Pseudoknot

102

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -221.40 6 6

103

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -221.67 8 4

104

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -223.16 11 8

105

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -223.64 6 4

106

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -224.49 6 6

107

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -225.43 8 6

108

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -227.29 8 4

Left turn

109

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -227.93 8 5

Multiple bulged bases

110

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -228.81 7 7

111

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -230.12 7 4

112

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -230.60 9 6

Reverse kink-turn

113

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -231.61 11 9

114

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -232.75 14 13

Kink-turn related

115

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -234.55 10.5 10

116

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -235.47 9 5

117

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -235.73 8 5

Multiple bulged bases

118

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -236.11 7 6

119

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -236.71 11 8

Kink-turn

120

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -236.89 8 5

Bulged stacked bases

121

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -237.44 11 7

Kink-turn related

122

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -237.94 9 7

123

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -239.61 8 6

124

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -239.67 10 7

125

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -241.21 6 4

126

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -242.08 9 8

127

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -242.39 12 11

128

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -243.13 6 5

129

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -244.90 11 11

130

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -247.52 11 8

131

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -249.09 8 8

Minor groove platform related

132

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -249.59 10 7

133

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -250.73 7 7

UAA/GAN related

134

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -251.70 9 7

Kink-turn

135

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -252.22 8 7

136

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -252.24 6 5

137

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -252.55 9 7

138

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -253.18 9 7

139

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -253.31 9 8

140

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -253.95 8 5

141

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -254.41 11 10

Pseudoknot

142

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -254.65 8 5

Major groove minor groove platform with intercalation; mini C-loop

143

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -254.96 8 7

144

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -255.09 6 5

145

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -255.51 7 7

146

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -255.74 10.5 10

147

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -259.60 7 5

Isolated non-canonical cWW pair

148

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -260.19 12 9

149

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -260.75 10 7

150

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -260.86 13 12

151

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -261.00 8 5

Kink-turn from U4

152

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -262.74 6 5

153

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -264.06 9.5 8.5

154

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -265.62 9 7

tSH-tHS-tHW

155

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -266.90 6 6

156

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -267.50 8 7

157

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -268.63 9 6

Kink-turn with embedded cWW pair

158

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -271.75 10 8

159

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -272.01 6 5

160

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -273.21 12 9

161

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -275.87 10 8

Part of G-quadruplex

162

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -276.87 14 12

163

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -277.48 6 5

164

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -279.05 10 6

165

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -279.21 16 14

Kink-turn

166

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -285.01 8 5

167

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -285.60 7 4

Major groove platform with intercalated tWH

168

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -286.72 8 5

169

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -288.33 12 10

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

170

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -290.26 11 11

171

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -290.56 7 7

tHW-tHW cross-strand stack

172

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -295.49 8 7

Kink-turn related

173

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -295.79 6 4

Minor groove platform, major groove intercalation

174

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -296.34 10 8

8x6 Sarcin-Ricin with inserted A; G-bulge

175

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -296.40 9 7

176

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -296.91 13 10

177

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -299.47 6 4

Major groove intercalation

178

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -302.84 10 9

179

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -305.32 12 10

180

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -305.88 9 6

181

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -306.44 16 13

182

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -306.80 8 6

183

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -307.17 9 8

Sarcin-Ricin target in LSU H95; G-bulge

184

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -307.77 6 4

185

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -307.92 5 4

186

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -308.43 6 5

187

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -308.85 7 4

Intercalated cWS

188

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -309.16 16 14

189

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -311.18 8 5

190

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -311.56 6 4

Minor groove platform

191

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -312.11 9 6

192

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -314.16 10 9

193

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -316.12 11 8

194

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -316.75 11 8

195

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -318.07 9 7

Kink-turn

196

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -319.53 6 4

197

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -320.58 9 7

198

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -321.34 7 4

199

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -323.73 6 4

200

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -325.15 10 6

201

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -325.59 4 4

Major groove minor groove platform; mini C-loop

202

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -325.92 10 8

203

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -329.14 9 6

Decoding loop related

204

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -329.50 10 8

Part of G-quadruplex

205

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -330.38 7 6

206

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -330.48 4 4

Minor groove platform

207

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -330.94 6 5

208

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -331.46 11 8

209

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -332.35 15 13

210

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -332.72 9 7

211

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -332.83 10 8

212

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -334.09 5 4

213

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -334.45 9 8

UAA/GAN with extra stack

214

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -336.96 17 15

215

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -341.45 8 5

tSH-tHW

216

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -343.31 8 7

217

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -348.26 7 5

218

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -348.31 6 5

219

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -350.35 18 16

220

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -350.39 5 4

Multiple bulged bases

221

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -350.67 15 13

222

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -350.88 11 10

223

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -351.19 11 9

224

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -351.29 10 7

225

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -351.67 9 7

226

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -352.64 9 8

227

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -354.24 12 10

Kink-turn

228

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -355.17 12 11

229

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -355.29 5 4

230

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -356.28 17 15

231

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -356.44 8 7

8x6 Sarcin-Ricin with inserted Y; G-bulge

232

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -356.95 10 7

Kink-turn related

233

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -358.90 6 5

234

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -359.14 6 4

Major groove platform

235

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -359.55 11 9

236

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -360.12 14 13

237

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -360.96 5 5

238

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -364.78 11 8

239

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -365.41 9 7

6x5 Sarcin-Ricin; G-bulge

240

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -366.03 10 8

241

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -367.26 9 8

Other IL

242

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -370.64 10 7

243

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -371.21 7 7

244

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -376.39 5 4

Single stack bend

245

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -377.67 8.5 8

Triple sheared related

246

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -378.00 10 9

247

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -378.67 9 6

248

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -379.48 8 7

249

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -380.13 12 12

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

250

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -380.15 5 4

251

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -382.26 12 10

tSH-tHW-tHH-tHS

252

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -388.16 5 4

Minor groove platform

253

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -389.60 16 13

254

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -393.34 10 9

8x6 Sarcin-Ricin with bulged A; G-bulge

255

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -395.30 6 4

256

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -396.25 9 7

257

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -396.48 12 9

258

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -397.91 7 5

Major groove platform

259

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -398.04 14 12

10x8 Sarcin-Ricin; G-bulge

260

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -400.21 9 8

Double sheared; A in syn; two near cWW pairs

261

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -400.96 17 16

262

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -402.45 19 17

263

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -404.91 19 18

264

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -404.97 7 6

265

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -409.52 6 5

266

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -411.54 8 5

267

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -417.73 8 4

Major groove platform with intercalation

268

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -421.95 10 9

269

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -423.98 9 7

Kink-turn

270

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -425.97 6 5

271

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -426.39 12 10

272

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -427.63 9 8

AAA cross-strand stack

273

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -428.15 6 5

Stack and bulge

274

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -429.69 9 6

275

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -429.72 13 11

276

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -429.85 10 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

277

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -430.53 9 7

Receptor of 11-nt loop-receptor motif

278

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -431.64 6 5

279

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -431.66 9 6

280

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -432.31 8 5

281

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -440.31 10 8

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

282

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -441.00 12 11

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

283

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -448.21 11 11

284

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -448.37 8 8

285

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -452.20 9 7

286

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -453.16 10 9

8x7 Sarcin-Ricin; G-bulge

287

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -453.39 13.5 11

288

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -454.95 15 13

289

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -459.30 6 5

Decoding loop related

290

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -459.44 6 5

Isolated non-canonical cWW pair

291

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -467.51 21 19

292

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -467.82 12 11

Kink-turn

293

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -472.83 22 21

294

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -473.27 12 11

Triple sheared with non-canonical cWW

295

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -476.40 14 12

296

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -478.50 8 7

297

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -479.66 8 6

298

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -486.60 8 6

Isolated non-canonical cWW contact

299

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -486.65 15 12

300

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -487.86 16 14

301

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -488.98 12 10

8x7 Sarcin-Ricin; G-bulge

302

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -489.57 11 10

303

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -493.37 21 20

304

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -493.88 11 9

305

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -497.44 12 10

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

306

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -497.73 12 11

307

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -498.26 8 6

308

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -502.41 6 5

309

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -502.75 9 8

7x6 Sarcin-Ricin; G-bulge

310

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -503.47 8 8

UAA/GAN with extra cWW

311

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -504.46 6 5

Single stack bend

312

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -505.72 5 5

Single bulged C

313

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -506.12 15 13

314

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -517.39 8 6

315

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -518.96 5 5

316

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -524.91 11 10

317

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -526.32 6 6

318

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -549.87 9 6

319

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -554.95 6 5

Isolated non-canonical cWW pair

320

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -557.34 8 6

321

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -560.06 9 7

UAA/GAN

322

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -560.66 5 5

Single bulged A

323

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -561.47 6 5

Single bulged U

324

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -570.31 13 12

325

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -575.57 7 6

Single bulged G

326

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -578.69 10 8

UAA/GAN

327

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -591.15 17 16

Kink-turn related

328

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -612.12 7 6

Minor groove platform

329

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -644.87 6 6

Isolated non-canonical cWW pair

330

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -647.71 7 6

Double sheared

331

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -665.10 7 6

UAA/GAN related

332

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -666.91 18 18

333

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -706.11 9 7

UAA/GAN variation

334

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -726.44 9 8

5x5 Sarcin-Ricin with intercalated A; G-bulge

335

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4232.09 12 10

336

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4298.61 14 13

337

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4542.53 18.5 17

338

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4711.87 12 10

339

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5084.24 14 12

340

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5119.75 9 9

tWH-tWH-tHW-tHW

341

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -5152.90 13 12

Bacterial 5S Loop E

342

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -5168.38 10 9

Kink-turn related

343

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5210.90 10 10

344

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -5213.92 7 6

345

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -5225.49 12 11

Kink-turn

346

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -5230.94 11 8

Kink-turn

347

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5278.49 10 10

Other IL

348

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -5290.79 12 9

Kink-turn

349

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5297.99 12 11

350

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5328.42 11 9

Kink-turn with non-sequential stacking

351

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -5335.42 11 8

352

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5346.08 12 9

353

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5347.71 11 9

354

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -5424.77 9 8

tSH-tSH-tHH-tHS

355

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -5502.90 12 10

356

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -5560.03 13 12

Kink-turn

357

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5607.72 8 5

358

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -5639.44 13 11

Kink-turn

359

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -5779.78 8 7

360

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -5818.74 9 8

UAA/GAN with tHH

361

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -5883.62 8 7

tSH-tWH-tHS-cWW

362

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -6202.55 10 8

tSH-tHW-tWH-tHS

363

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -6214.12 9 7

Receptor of 11-nt loop-receptor motif

364

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6236.53 9 8

365

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6293.66 8 8

366

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -6325.95 10 7

367

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -6406.89 9 7

368

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -6480.99 8 7

369

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -6696.60 8 7

tSH-tHH-tHS

370

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6871.31 9 7

Kink-turn

371

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -6933.32 6.5 6

Symmetric double minor groove platform

372

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -7001.16 10 9

Quadruple sheared

373

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7018.14 6 6

C-loop with bulged stacked A's

374

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7244.75 7 6

8-nt loop receptor

375

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -7713.93 9 7

cWH basepair and non-canonical AC

376

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -7791.85 10 8

Triple sheared

377

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -7930.09 8 6

Tandem non-canonical cWW pairs

378

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -8119.34 8 6

379

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8321.58 9 6

380

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -8415.39 7 6

Double sheared with non-canonical cWW

381

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -8424.11 9 6

Double sheared

382

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8647.33 5 4

C-loop

383

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -8697.79 8 6

Other IL

384

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -8745.57 10 7

385

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -8780.38 8 7

tSH-tWH-tHS

386

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -9131.45 8 5

tSH-tHW

387

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -9131.57 7 6

Triple non-canonical cWW pairs

388

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -9221.07 8 6

389

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9475.80 8 7

Triple sheared

390

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -9491.42 8 6

391

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9760.76 8 6

Tandem non-canonical cWW pairs

392

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 5 4

C-loop

393

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -9999.00 6.5 6

Isolated cWH basepair

394

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 5

395

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -9999.00 7 7

396

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 7 6

Isolated non-canonical cWW pair

397

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -9999.00 5 4

398

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 8 5

Multiple bulged bases

399

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 6 5

Isolated cWS basepair

400

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 6 4

Major groove platform; stack outside cWW

401

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 6 5

Isolated non-canonical cWW pair

402

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -9999.00 6 6

403

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 5 4

404

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 5

405

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -9999.00 7 6

Isolated tWW turn

406

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 4 4

Multiple bulged bases

407

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 7 5

408

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 7 5

409

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 6 6

Tandem non-canonical cWW pairs

410

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -9999.00 9 7

Isolated tHS basepair with bulges

411

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 9 7

Coloring options: