JAR3D
Query RF00210-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 23 Hairpin loop
Column numbers: 235-241 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.
Scored sequences and counts
CUAAC-G 21
UCA---C 12
CUCAC-G 6
CACAC-G 5
CGAAU-G 4
CAAAC-G 3
CACAU-G 3
CUUAC-G 3
CUC-U-G 3
UUUACAG 2
CGGAC-G 2
CUGAC-G 2
CAC-U-G 2
UUGACAG 1
CAACU-G 1
CAAUC-G 1
CAGAU-G 1
CCAAC-G 1
CCAAU-G 1
CGAAC-G 1
CGCAA-G 1
CGGAU-G 1
CUAAC-U 1
CUACC-G 1
CUAGC-G 1
CUCAU-G 1
CUGAA-G 1
CUGGC-G 1
CUGUC-G 1
CUUGU-G 1
UUAGC-A 1
UCACA-- 1
UUA-U-G 1
UUC-C-A 1
U---C-A 1
U---C-U 1
U---U-U 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_56334.1
Basepair signature:
|
90.22 | 11.19 | 2.5 | 2 |
Mini UNCG |
| 2 |
Motif group HL_53890.2
Basepair signature:
|
73.91 | 0.39 | 2 | 2 |
|
| 3 |
Motif group HL_70782.2
Basepair signature:
|
69.57 | 14.34 | 3 | 2 |
|
| 4 |
Motif group HL_75660.5
Basepair signature:
|
68.48 | -341.87 | 2 | 1 |
|
| 5 |
Motif group HL_04783.2
Basepair signature:
|
63.04 | 7.48 | 2 | 2 |
|
| 6 |
Motif group HL_50006.2
Basepair signature:
|
60.87 | -10.61 | 3 | 2 |
|
| 7 |
Motif group HL_56131.2
Basepair signature:
|
59.78 | 4.31 | 3 | 2 |
|
| 8 |
Motif group HL_48778.2
Basepair signature:
|
56.52 | -6.73 | 1 | 1 |
Mini UNCG |
| 9 |
Motif group HL_37824.7
Basepair signature:
|
56.52 | -18.55 | 1 | 1 |
GNRA |
| 10 |
Motif group HL_93535.1
Basepair signature:
|
56.52 | -361.13 | 2 | 2 |
|
| 11 |
Motif group HL_89199.2
Basepair signature:
|
53.26 | -1231.97 | 2 | 2 |
Mini UNCG |
| 12 |
Motif group HL_38901.2
Basepair signature:
|
52.17 | -15.27 | 3 | 2 |
tRNA D-loop |
| 13 |
Motif group HL_46501.1
Basepair signature:
|
45.65 | -14.51 | 2 | 2 |
|
| 14 |
Motif group HL_62934.1
Basepair signature:
|
45.65 | -26.36 | 2 | 2 |
|
| 15 |
Motif group HL_43517.1
Basepair signature:
|
43.48 | -35.25 | 3 | 2 |
|
| 16 |
Motif group HL_69752.2
Basepair signature:
|
42.39 | -374.90 | 2 | 2 |
|
| 17 |
Motif group HL_57875.1
Basepair signature:
|
40.22 | -37.11 | 3 | 2 |
|
| 18 |
Motif group HL_59843.1
Basepair signature:
|
39.13 | -382.11 | 3 | 3 |
|
| 19 |
Motif group HL_86870.2
Basepair signature:
|
31.52 | -19.11 | 2 | 2 |
|
| 20 |
Motif group HL_13529.1
Basepair signature:
|
31.52 | -36.83 | 3 | 2 |
|
| 21 |
Motif group HL_48417.5
Basepair signature:
|
29.35 | -23.30 | 2 | 2 |
|
| 22 |
Motif group HL_49922.4
Basepair signature:
|
29.35 | -51.58 | 2 | 2 |
|
| 23 |
Motif group HL_57176.2
Basepair signature:
|
26.09 | -1385.67 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 24 |
Motif group HL_32346.4
Basepair signature:
|
25.00 | -17.33 | 2 | 2 |
|
| 25 |
Motif group HL_97917.2
Basepair signature:
|
25.00 | -388.30 | 3 | 3 |
|
| 26 |
Motif group HL_13189.1
Basepair signature:
|
20.65 | -24.07 | 3 | 3 |
|
| 27 |
Motif group HL_82710.2
Basepair signature:
|
19.57 | -33.86 | 4 | 2 |
|
| 28 |
Motif group HL_89893.1
Basepair signature:
|
18.48 | -309.94 | 3 | 3 |
|
| 29 |
Motif group HL_29966.1
Basepair signature:
|
17.39 | -1411.12 | 5 | 3 |
|
| 30 |
Motif group HL_22135.1
Basepair signature:
|
14.13 | -399.98 | 4 | 3 |
|
| 31 |
Motif group HL_80709.3
Basepair signature:
|
14.13 | -1387.50 | 2 | 2 |
|
| 32 |
Motif group HL_65794.5
Basepair signature:
|
11.96 | -1284.65 | 3 | 2 |
Pseudoknot geometry |
| 33 |
Motif group HL_52953.3
Basepair signature:
|
11.96 | -1296.32 | 3 | 2 |
|
| 34 |
Motif group HL_07886.3
Basepair signature:
|
10.87 | -63.07 | 4 | 3 |
|
| 35 |
Motif group HL_50318.1
Basepair signature:
|
9.78 | -63.92 | 4 | 4 |
|
| 36 |
Motif group HL_47787.2
Basepair signature:
|
9.78 | -417.17 | 3 | 2 |
|
| 37 |
Motif group HL_80922.2
Basepair signature:
|
8.70 | -62.11 | 4 | 3 |
|
| 38 |
Motif group HL_38168.1
Basepair signature:
|
8.70 | -373.11 | 2 | 2 |
|
| 39 |
Motif group HL_81100.2
Basepair signature:
|
8.70 | -1745.78 | 4 | 3 |
|
| 40 |
Motif group HL_66103.1
Basepair signature:
|
7.61 | -64.79 | 4 | 3 |
|
| 41 |
Motif group HL_99040.1
Basepair signature:
|
7.61 | -1086.28 | 4 | 3 |
|
| 42 |
Motif group HL_78677.1
Basepair signature:
|
6.52 | -47.08 | 3 | 2 |
|
| 43 |
Motif group HL_20811.4
Basepair signature:
|
6.52 | -54.35 | 2 | 2 |
tRNA D-loop |
| 44 |
Motif group HL_35941.1
Basepair signature:
|
6.52 | -56.53 | 3 | 3 |
|
| 45 |
Motif group HL_76094.1
Basepair signature:
|
6.52 | -153.40 | 2 | 2 |
|
| 46 |
Motif group HL_55195.3
Basepair signature:
|
6.52 | -396.85 | 3 | 2 |
|
| 47 |
Motif group HL_28791.1
Basepair signature:
|
6.52 | -1322.27 | 4 | 3 |
|
| 48 |
Motif group HL_32392.1
Basepair signature:
|
5.43 | -65.02 | 4 | 3 |
|
| 49 |
Motif group HL_78347.4
Basepair signature:
|
5.43 | -84.40 | 4 | 3 |
|
| 50 |
Motif group HL_56676.1
Basepair signature:
|
5.43 | -394.98 | 3 | 3 |
|
| 51 |
Motif group HL_60914.1
Basepair signature:
|
5.43 | -430.71 | 3 | 3 |
|
| 52 |
Motif group HL_26631.1
Basepair signature:
|
5.43 | -1460.23 | 3 | 3 |
|
| 53 |
Motif group HL_13963.3
Basepair signature:
|
4.35 | -56.99 | 4 | 3 |
|
| 54 |
Motif group HL_87954.2
Basepair signature:
|
4.35 | -76.85 | 3 | 3 |
|
| 55 |
Motif group HL_71391.1
Basepair signature:
|
2.17 | -59.32 | 4 | 2.5 |
|
| 56 |
Motif group HL_34617.5
Basepair signature:
|
2.17 | -66.02 | 2 | 2 |
UNCG |
| 57 |
Motif group HL_65313.1
Basepair signature:
|
2.17 | -1430.12 | 4 | 4 |
|
| 58 |
Motif group HL_31585.4
Basepair signature:
|
2.17 | -1863.42 | 4 | 3 |
Purine riboswitch |
| 59 |
Motif group HL_22584.6
Basepair signature:
|
1.09 | -56.59 | 2 | 2 |
Fab BL3-6 binding hairpin with tSW |
| 60 |
Motif group HL_08100.1
Basepair signature:
|
1.09 | -90.17 | 3 | 3 |
|
| 61 |
Motif group HL_30068.2
Basepair signature:
|
1.09 | -446.66 | 3 | 3 |
|
| 62 |
Motif group HL_67667.2
Basepair signature:
|
1.09 | -2434.11 | 3 | 3 |
|
| 63 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -67.42 | 4 | 3 |
|
| 64 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -83.22 | 6 | 4 |
|
| 65 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -92.05 | 6 | 4 |
T-loop with unstacked turn |
| 66 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -93.00 | 3 | 3 |
|
| 67 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -100.49 | 5 | 4 |
|
| 68 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -101.00 | 5 | 5 |
Pseudoknot |
| 69 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -102.62 | 5 | 4 |
|
| 70 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -105.81 | 5 | 5 |
T-loop with 3 stacked bulged bases |
| 71 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -106.28 | 4 | 4 |
|
| 72 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -113.27 | 5 | 4 |
|
| 73 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -117.30 | 3 | 2 |
GNRA with extra cWW |
| 74 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -118.90 | 5 | 4 |
|
| 75 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -120.55 | 4 | 3 |
T-loop with 2 bulged bases not stacked |
| 76 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -122.90 | 6 | 4 |
|
| 77 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -123.02 | 4 | 3 |
|
| 78 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -129.14 | 4 | 3 |
|
| 79 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -133.65 | 5 | 4 |
|
| 80 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -135.04 | 5 | 3 |
T-loop with 2 stacked bulged bases |
| 81 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -136.38 | 6 | 5 |
|
| 82 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -141.19 | 6 | 5 |
|
| 83 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -148.99 | 4 | 4 |
|
| 84 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -159.74 | 6 | 5 |
|
| 85 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -163.81 | 8 | 7 |
|
| 86 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -167.24 | 3 | 3 |
T-loop related |
| 87 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -168.31 | 7 | 6 |
|
| 88 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -169.85 | 4 | 4 |
|
| 89 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -175.95 | 8 | 7 |
|
| 90 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -176.70 | 6 | 6 |
|
| 91 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -178.53 | 8 | 6 |
|
| 92 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -180.80 | 8 | 7 |
|
| 93 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -182.63 | 7 | 6 |
|
| 94 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -188.60 | 7 | 6 |
|
| 95 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -189.30 | 7 | 6 |
|
| 96 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -200.47 | 8 | 7 |
|
| 97 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -205.59 | 8 | 7 |
|
| 98 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -205.60 | 7 | 7 |
tRNA D-loop |
| 99 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -219.40 | 7 | 6 |
|
| 100 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -223.90 | 9 | 8 |
|
| 101 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -234.44 | 7 | 7 |
|
| 102 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -235.44 | 9 | 8 |
|
| 103 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -236.13 | 10 | 8 |
|
| 104 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -240.08 | 8 | 8 |
|
| 105 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -242.07 | 9 | 9 |
|
| 106 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -245.13 | 9 | 9 |
|
| 107 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -246.08 | 9 | 8 |
tRNA D-loop |
| 108 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -278.92 | 6 | 5 |
T-loop with unstacked turn |
| 109 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -289.80 | 10 | 10 |
Pseudoknot geometry |
| 110 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -295.60 | 7 | 6 |
G-quadruplex fragment |
| 111 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -303.82 | 12 | 12 |
|
| 112 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -310.52 | 11 | 10 |
|
| 113 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -323.70 | 7 | 6 |
|
| 114 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -327.79 | 6.5 | 6 |
tRNA D-loop |
| 115 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -328.09 | 12 | 12 |
|
| 116 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -328.46 | 5 | 4 |
|
| 117 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -333.89 | 6 | 6 |
|
| 118 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -334.89 | 10 | 9 |
|
| 119 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -335.89 | 5 | 5 |
Other HL |
| 120 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -344.47 | 5 | 4 |
|
| 121 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -347.46 | 9 | 7 |
G-quadruplex fragment |
| 122 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -348.87 | 9 | 8 |
|
| 123 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -358.86 | 8 | 7 |
|
| 124 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -370.10 | 5 | 5 |
|
| 125 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -370.81 | 6 | 4 |
|
| 126 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -372.41 | 4 | 4 |
|
| 127 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -381.36 | 5 | 4 |
tRNA anticodon loop with synthetase |
| 128 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -392.60 | 4 | 4 |
|
| 129 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -392.82 | 6 | 6 |
tRNA D-loop |
| 130 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -394.02 | 5 | 5 |
|
| 131 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -411.10 | 4 | 3 |
Pseudoknot geometry |
| 132 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -418.68 | 5 | 3 |
|
| 133 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -430.92 | 3 | 3 |
GNRA with tandem sheared |
| 134 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -444.81 | 5 | 5 |
|
| 135 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -453.31 | 3 | 3 |
|
| 136 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -493.63 | 12 | 11 |
|
| 137 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -521.39 | 16 | 15 |
|
| 138 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -533.29 | 6 | 5 |
|
| 139 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -542.55 | 10 | 9 |
|
| 140 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -740.34 | 7 | 5 |
|
| 141 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -764.47 | 7 | 7 |
tRNA D-loop |
| 142 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -840.37 | 6 | 6 |
|
| 143 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -858.28 | 7 | 6 |
|
| 144 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -864.36 | 6.5 | 6 |
|
| 145 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -871.77 | 7 | 6 |
|
| 146 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -911.57 | 8 | 7 |
|
| 147 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -917.40 | 10 | 10 |
tRNA D-loop |
| 148 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -933.90 | 6 | 5 |
|
| 149 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -956.45 | 7 | 6 |
|
| 150 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -981.81 | 7 | 6 |
|
| 151 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -981.90 | 8 | 7 |
|
| 152 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -988.58 | 4 | 4 |
|
| 153 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -1017.16 | 5 | 5 |
|
| 154 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -1026.85 | 7 | 5 |
|
| 155 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -1038.26 | 9 | 7 |
|
| 156 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -1095.10 | 6.5 | 6 |
|
| 157 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -1116.18 | 8 | 6 |
|
| 158 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -1116.46 | 5 | 5 |
|
| 159 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -1120.42 | 4 | 3 |
|
| 160 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -1121.24 | 5 | 5 |
|
| 161 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -1137.29 | 7 | 7 |
|
| 162 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -1167.25 | 5 | 3 |
|
| 163 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -1218.41 | 5 | 4.5 |
|
| 164 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -1308.49 | 6 | 5 |
|
| 165 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -1315.33 | 6 | 6 |
|
| 166 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -1325.22 | 5 | 3 |
|
| 167 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -1407.74 | 5 | 3 |
T-loop with unstacked turn |
| 168 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -1426.12 | 4 | 3 |
|
| 169 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -1435.64 | 3 | 3 |
tRNA anticodon loop |
| 170 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -1485.90 | 8 | 6 |
|
| 171 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -1493.98 | 4 | 4 |
|
| 172 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -1555.23 | 5 | 4 |
|
| 173 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -1580.17 | 4 | 3 |
tRNA anticodon loop |
| 174 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -1586.54 | 9 | 9 |
|
| 175 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -1618.63 | 6 | 6 |
|
| 176 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -1741.96 | 7 | 5 |
|
| 177 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -1751.43 | 9 | 8 |
|
| 178 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -1773.39 | 6 | 4 |
|
| 179 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -1803.20 | 4.5 | 4 |
|
| 180 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -1820.67 | 4 | 3 |
|
| 181 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -1852.47 | 7 | 7 |
|
| 182 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -1875.63 | 4 | 4 |
tRNA anticodon loop |
| 183 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -1883.60 | 6 | 5 |
|
| 184 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -2031.02 | 5 | 5 |
|
| 185 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -2361.92 | 5 | 3 |
|
| 186 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -2586.17 | 5 | 3 |
|
| 187 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -2726.68 | 4 | 3 |
Pseudoknot geometry |
| 188 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -4012.11 | 7 | 7 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 189 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4020.66 | 12 | 12 |
|
| 190 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4028.92 | 15 | 14 |
|
| 191 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -4056.67 | 12 | 12 |
|
| 192 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4065.16 | 17 | 17 |
G-quadruplex |
| 193 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4070.46 | 20 | 18 |
G-quadruplex |
| 194 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4077.28 | 16 | 15 |
|
| 195 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -4079.54 | 13 | 13 |
|
| 196 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4083.14 | 21 | 19 |
|
| 197 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -4106.63 | 14 | 14 |
|
| 198 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4108.21 | 20 | 20 |
G-quadruplex |
| 199 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4118.23 | 16 | 15 |
|
| 200 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4453.05 | 10 | 9 |
G-quadruplex fragment |
| 201 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4676.87 | 34 | 34 |
|
| 202 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4771.85 | 8 | 7 |
|
| 203 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -4909.83 | 9 | 9 |
|
| 204 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4967.80 | 11 | 9 |
|
| 205 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4978.48 | 7 | 7 |
|
| 206 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -4988.28 | 7 | 6 |
|
| 207 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -5006.19 | 5 | 4 |
|
| 208 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -5032.54 | 9 | 8 |
|
| 209 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -5043.28 | 11 | 11 |
|
| 210 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -5108.47 | 11 | 10 |
Pseudoknot geometry with G-bulge |
| 211 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -5137.29 | 6 | 4.5 |
|
| 212 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -5147.18 | 7 | 6 |
|
| 213 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -5221.07 | 8 | 7 |
tRNA D-loop |
| 214 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -5310.88 | 4 | 4 |
|
| 215 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5325.50 | 7 | 7 |
|
| 216 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -5378.55 | 7 | 7 |
|
| 217 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5402.66 | 7 | 6 |
Pseudoknot geometry |
| 218 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -5405.88 | 5 | 5 |
|
| 219 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -5453.96 | 7 | 6 |
|
| 220 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -5456.31 | 7 | 7 |
|
| 221 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -5485.43 | 8 | 7 |
tRNA D-loop |
| 222 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5544.53 | 6 | 6 |
|
| 223 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -5547.67 | 8 | 7 |
|
| 224 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -5556.03 | 7 | 6 |
|
| 225 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -5562.26 | 5 | 4 |
|
| 226 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5698.48 | 6 | 5 |
|
| 227 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -5704.50 | 7 | 7 |
|
| 228 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5743.87 | 8 | 7 |
|
| 229 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -5810.48 | 6 | 6 |
Pseudoknot |
| 230 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5817.64 | 6 | 5 |
|
| 231 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -5932.30 | 9 | 7 |
|
| 232 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5940.97 | 9 | 9 |
|
| 233 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -6082.33 | 7 | 6 |
|
| 234 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -6125.45 | 7 | 7 |
|
| 235 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -6223.66 | 11 | 11 |
|
| 236 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -6355.80 | 6 | 6 |
|
| 237 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -6382.00 | 11 | 10 |
|
| 238 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -6518.64 | 5 | 4 |
|
| 239 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -6665.67 | 4 | 4 |
|
| 240 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -6749.96 | 6 | 5 |
|
| 241 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -7109.70 | 6 | 4 |
|
| 242 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -7131.88 | 3 | 3 |
|
| 243 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -7156.12 | 3 | 3 |
|
| 244 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -7375.07 | 7 | 7 |
|
| 245 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -7452.02 | 6 | 5 |
|
| 246 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -8018.18 | 5 | 4 |
|
| 247 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -8441.27 | 11 | 10 |
|
| 248 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -8695.82 | 8 | 6 |
|
| 249 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -9043.26 | 5 | 4 |
|
| 250 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -9238.91 | 4 | 3 |
Pseudoknot geometry |
| 251 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -9256.13 | 3 | 3 |
|
| 252 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 6 | 5 |
tRNA D-loop |
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
tRNA D-loop |