Hairpin Loop Motif Atlas Release 3.63

#	Motif	Num Nts	Instances
1	HL_43074.17 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match GNRA (240) GNRA variation (11) GNRA with GA tSW pair (4) GNRA related (2)	6	257
2	HL_33239.17 View exemplar Basepair signature: cWW-R-R-tWH-R-R-R History status: Updated, 1 parent T-loop with 2 stacked bulged bases (84) T-loop with 2 bulged bases not stacked (9)	9	95
3	HL_79299.11 View exemplar Basepair signature: cWW-tSW-R History status: Exact match UNCG (38) UNCG variation (3) GNRA related (1)	5	45
4	HL_97724.1 View exemplar Basepair signature: cWW-bif-R-R-R-R-R History status: Exact match tRNA anticodon loop (22) Anticodon loop related (3)	9	28
5	HL_93727.5 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: Exact match GNRA wlth tandem sheared (9) GNRA related (4) GNRA with extra cWW (2) Pseudoknot geometry (1)	8	21
6	HL_46142.8 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot geometry (20)	8	20
7	HL_69353.7 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (16)	3	18
8	HL_02361.6 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match GNRA (12) GNRA variation (2)	6	16
9	HL_32512.8 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match Pseudoknot geometry (13)	7	14
10	HL_26055.6 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	14
11	HL_08002.6 View exemplar Basepair signature: cWW-R-R-tWH-R-R History status: Exact match T-loop with unstacked turn (14)	8	14
12	HL_86880.5 View exemplar Basepair signature: cWW-R-R History status: Exact match Pseudoknot geometry with 3' bulge (9)	5	12
13	HL_35978.6 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (10)	11	12
14	HL_79272.3 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	11
15	HL_73266.5 View exemplar Basepair signature: cWW-R-cSW-R-cSH History status: Exact match	9	11
16	HL_87219.4 View exemplar Basepair signature: cWW-R-tSH-R-R-R-R History status: Exact match	10	11
17	HL_36982.3 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (9)	3	10
18	HL_68493.6 View exemplar Basepair signature: cWW-tWH-R-R-R History status: Exact match T-loop with 2 stacked bulged bases (6) T-loop with 1 bulged base (2) Other HL (1)	7	10
19	HL_46891.3 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot (2)	8	10
20	HL_67719.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match Ribsomal LSU H95 (5) Pseudoknot geometry (3)	6	9
21	HL_53760.4 View exemplar Basepair signature: cWW-bif-R-tSH-R History status: Exact match T-loop related (1) GNRA related (1)	8	9
22	HL_68304.6 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match GNRA (8)	6	8
23	HL_04171.4 View exemplar Basepair signature: cWW-cWW-R-cSS-cSS-R History status: Exact match	10	8
24	HL_54035.7 View exemplar Basepair signature: cWW-cWW-R-R-R History status: Exact match T-loop related (5)	8	8
25	HL_67265.4 View exemplar Basepair signature: cWW-R-tHW-R-R-R-R-R History status: Exact match	10	8
26	HL_23481.5 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match GNRA (1)	7	7
27	HL_20743.2 View exemplar Basepair signature: cWW-R-cSS-R-R History status: Exact match	8	7
28	HL_16898.3 View exemplar Basepair signature: cWW-tSW-R History status: Exact match UNCG (3)	5	7
29	HL_67216.5 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match GNRA (1)	7	7
30	HL_92681.5 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	7
31	HL_02733.5 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	7
32	HL_98557.5 View exemplar Basepair signature: cWW History status: Exact match	3	7
33	HL_82678.2 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	6
34	HL_36421.5 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: Exact match	9	6
35	HL_17926.5 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (2)	9	6
36	HL_28567.3 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	6
37	HL_56677.5 View exemplar Basepair signature: cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW History status: Exact match	13	6
38	HL_15942.5 View exemplar Basepair signature: cWW-R History status: Exact match Externally structured (1)	4	6
39	HL_22447.1 View exemplar Basepair signature: cWW-R History status: Exact match Mini UNCG (2)	4	6
40	HL_88225.1 View exemplar Basepair signature: cWW-cWS-R-R History status: Exact match tRNA D-loop (6)	6	6
41	HL_51876.1 View exemplar Basepair signature: cWW-cWS-R-R-R-R History status: Exact match tRNA D-loop (6)	8	6
42	HL_72451.5 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	6
43	HL_05018.6 View exemplar Basepair signature: cWW-cSW-R-R-R-R History status: Exact match	8	6
44	HL_35894.3 View exemplar Basepair signature: cWW-cSW-R-R History status: Exact match	6	6
45	HL_88918.1 View exemplar Basepair signature: cWW-cWS-R-R-R History status: Exact match tRNA D-loop (3)	7	6
46	HL_19870.5 View exemplar Basepair signature: cWW-tSH-tHH-tWW-R-R-R History status: Exact match	11	6
47	HL_78457.4 View exemplar Basepair signature: cWW-tWH-R-tSH-R History status: Exact match	8	6
48	HL_39334.5 View exemplar Basepair signature: cWW-tSW-R-R History status: Exact match	7	5
49	HL_43613.4 View exemplar Basepair signature: cWW-tWH-tWH-R History status: Exact match	7	5
50	HL_48376.4 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: Exact match	9	5
51	HL_90642.5 View exemplar Basepair signature: cWW-R-R-tWH-R History status: Exact match	7	5
52	HL_66171.3 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	5
53	HL_29414.1 View exemplar Basepair signature: cWW-R-R-cSH-R-R-R History status: Exact match Pseudoknot with intercalation (1)	10	5
54	HL_50622.6 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	5
55	HL_57052.3 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (5)	3	5
56	HL_32617.3 View exemplar Basepair signature: cWW-cSH History status: Updated, 1 parent tRNA D-loop (4) D-loop related (1)	5	5
57	HL_16568.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	5
58	HL_92304.3 View exemplar Basepair signature: cWW-cSW-R-R-tSH-R-R History status: Exact match	10	5
59	HL_69774.3 View exemplar Basepair signature: cWW-tSW-R-R History status: Exact match Fab BL3-6 binding hairpin with tSW (3) Other HL (2)	6	5
60	HL_31581.4 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (2)	8	4
61	HL_62869.3 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	4
62	HL_44730.2 View exemplar Basepair signature: cWW-R History status: Exact match	4	4
63	HL_86769.2 View exemplar Basepair signature: cWW-cSS-cSH History status: Exact match	7	4
64	HL_73793.2 View exemplar Basepair signature: cWW-tWH-tWH-R-R History status: Exact match	8	4
65	HL_06569.2 View exemplar Basepair signature: cWW-tSH-R History status: Exact match	5	4
66	HL_29487.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match Mini UNCG (4)	6	4
67	HL_41778.1 View exemplar Basepair signature: cWW-cWS-tSW History status: Exact match	6	4
68	HL_16135.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match Anticodon loop related (1)	10	4
69	HL_94386.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	4
70	HL_46546.1 View exemplar Basepair signature: cWW-R History status: Exact match Mini UNCG (1)	4	4
71	HL_94651.1 View exemplar Basepair signature: cWW-tSS-R-R-R History status: Exact match	7	4
72	HL_49873.1 View exemplar Basepair signature: cWW-tSH-cWS-cWS-R History status: Exact match tRNA D-loop (3)	8	3
73	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	0	3
74	HL_23537.2 View exemplar Basepair signature: cWW-R-R-tWH-R-R-R-R History status: Exact match T-loop with unstacked turn (3)	10	3
75	HL_98885.3 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (2)	10	3
76	HL_01181.4 View exemplar Basepair signature: cWW-tWH-R-R-R History status: Exact match	7	3
77	HL_99223.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	3
78	HL_32273.1 View exemplar Basepair signature: cWW-cWW-cWS-R-R History status: Exact match	8	3
79	HL_37407.2 View exemplar Basepair signature: cWW-R History status: Exact match	4	3
80	HL_32458.3 View exemplar Basepair signature: cWW-R-R-R-tWH-R History status: Exact match	9	3
81	HL_87080.1 View exemplar Basepair signature: cWW-cWS-R-R-R History status: Exact match tRNA D-loop (1)	7	3
82	HL_96776.3 View exemplar Basepair signature: cWW-cSW-R History status: Exact match Other HL (1)	5	3
83	HL_68529.2 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (3)	3	3
84	HL_11805.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	3
85	HL_18722.3 View exemplar Basepair signature: cWW-R History status: Exact match Mini UNCG (2)	4	3
86	HL_49196.4 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	3
87	HL_80105.3 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	3
88	HL_32527.3 View exemplar Basepair signature: cWW-tSH-R History status: Exact match GNRA related (2) GNRA (1)	5	3
89	HL_94352.4 View exemplar Basepair signature: cWW History status: Exact match	3	3
90	HL_91503.3 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	3
91	HL_19162.2 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R-R-R History status: Exact match	11	3
92	HL_81205.2 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	0	3
93	HL_12703.2 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	3
94	HL_42733.4 View exemplar Basepair signature: cWW-cWW-tSH-R-R History status: Exact match tRNA anticodon loop (1) GNRA with extra cWW (1) GNRA related (1)	8	3
95	HL_38646.3 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match T-loop related (3)	7	3
96	HL_05123.2 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (2)	9	3
97	HL_55511.2 View exemplar Basepair signature: cWW-cWS-R History status: Exact match tRNA D-loop (2)	5	3
98	HL_78061.2 View exemplar Basepair signature: cWW-R-R-R-tWH-R-R-R History status: Exact match T-loop with 3 stacked bulged bases (3)	10	3
99	HL_72714.2 View exemplar Basepair signature: cWW-cWW-R-R-R-R-cWH-R History status: Exact match	11	3
100	HL_17086.2 View exemplar Basepair signature: cWW-cWW-R-tSH-R-tSH-R-R History status: Exact match	13	3
101	HL_00923.1 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match Other HL (1)	7	2
102	HL_08510.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	0	2
103	HL_95464.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	2
104	HL_56387.1 View exemplar Basepair signature: cWW-cWH-R History status: Exact match	5	2
105	HL_98870.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	0	2
106	HL_31583.1 View exemplar Basepair signature: cWW-R-cSH-R History status: Exact match Pseudoknot geometry (1)	6	2
107	HL_49992.1 View exemplar Basepair signature: cWW-cWW-tWH-tWH-R-R History status: Exact match	10	2
108	HL_69941.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	2
109	HL_02906.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	2
110	HL_90620.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	0	2
111	HL_20751.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	0	2
112	HL_40469.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	2
113	HL_86843.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match	7	2
114	HL_06048.1 View exemplar Basepair signature: cWW-R-cSS-cSS-R History status: Exact match	9	2
115	HL_56589.1 View exemplar Basepair signature: cWW-cWS-cSH-R-R-R-R History status: Exact match tRNA D-loop (1)	10	2
116	HL_50537.3 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match	7	2
117	HL_24625.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	2
118	HL_18218.2 View exemplar Basepair signature: cWW-bif-R-R History status: Exact match	6	2
119	HL_70970.1 View exemplar Basepair signature: cWW-R-R History status: Exact match Mini UNCG related (1)	5	2
120	HL_01472.4 View exemplar Basepair signature: cWW-R-tSW-R History status: Exact match	6	2
121	HL_51033.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	2
122	HL_60140.1 View exemplar Basepair signature: cWW-bif-R-R History status: Exact match	6	2
123	HL_71540.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match Mini UNCG with extended bulge (1)	7	2
124	HL_83315.1 View exemplar Basepair signature: cWW-cWW-R-R-R History status: Exact match tRNA anticodon loop (1)	8	2
125	HL_25466.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (2)	11	2
126	HL_53987.4 View exemplar Basepair signature: cWW-cWS History status: Exact match D-loop related (2)	4	2
127	HL_91287.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	6	2
128	HL_35491.3 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	2
129	HL_46465.1 View exemplar Basepair signature: cWW-tSW-cSH-tHH-tWW-cHW-cWH-cHW-cWH-tWW-cWH-cWH-R-cWH-cWH-R History status: Exact match	22	2
130	HL_80705.1 View exemplar Basepair signature: cWW-tWW-R-R-R History status: Exact match Pseudoknot (2)	7	2
131	HL_12571.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-R-R-R-R-R History status: Exact match tRNA D-loop (2)	13	2
132	HL_84050.1 View exemplar Basepair signature: cWW-R-cSH History status: Exact match D-loop related (2)	6	2
133	HL_67052.1 View exemplar Basepair signature: cWW-bif-R-R-R-R History status: Exact match tRNA anticodon loop (1)	8	2
134	HL_76406.3 View exemplar Basepair signature: cWW-cWH-R-R-R-R History status: Exact match	9	2
135	HL_07579.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R-R History status: Exact match	14	2
136	HL_30596.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	2
137	HL_33172.1 View exemplar Basepair signature: cWW-R-tSW History status: Exact match	5	2
138	HL_16845.5 View exemplar Basepair signature: cWW-tHH-R History status: Exact match	5	2
139	HL_55136.1 View exemplar Basepair signature: cWW-R-R-cSH-cSH History status: Exact match Pseudoknot with intercalation (2)	8	2
140	HL_61984.1 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG (1)	3	2
141	HL_88982.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	2
142	HL_31320.1 View exemplar Basepair signature: cWW-cWS-R-R History status: Exact match tRNA D-loop (1)	6	2
143	HL_62604.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match GNRA (1)	6	2
144	HL_86069.1 View exemplar Basepair signature: cWW-cWH-R History status: Exact match	5	2
145	HL_26772.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R-R History status: Exact match	11	2
146	HL_47934.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	6	2
147	HL_20714.1 View exemplar Basepair signature: cWW-cWW-tWH-R-R-R-R-R History status: Exact match	11	1
148	HL_58912.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
149	HL_69818.1 View exemplar Basepair signature: cWW-tSW-R History status: Exact match	5	1
150	HL_93221.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R History status: Exact match	13	1
151	HL_02811.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	0	1
152	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
153	HL_34135.1 View exemplar Basepair signature: cWW-cWW-tSH-R History status: Exact match tRNA anticodon loop (1)	7	1
154	HL_52853.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match tRNA D-loop (1)	6	1
155	HL_73016.1 View exemplar Basepair signature: cWW-tSW-R History status: Exact match	6	1
156	HL_05692.1 View exemplar Basepair signature: cWW History status: Exact match	3	1
157	HL_17899.1 View exemplar Basepair signature: cWW-R-tSW-R-R History status: Exact match	8	1
158	HL_27757.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
159	HL_78724.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
160	HL_90257.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry with G-bulge (1)	15	1
161	HL_00996.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	5	1
162	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	0	1
163	HL_39425.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-cSH History status: Exact match	11	1
164	HL_59273.1 View exemplar Basepair signature: cWW-tWH-R-R-R-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	15	1
165	HL_82782.1 View exemplar Basepair signature: cWW-R-tSH-tHS-R-R-R-R-R-R-R-R-R-R History status: Exact match	18	1
166	HL_93229.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	5	1
167	HL_13149.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: Exact match	9	1
168	HL_34423.1 View exemplar Basepair signature: cWW-tSH-cWS-cSH-R History status: Exact match	9	1
169	HL_53037.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot (1)	8	1
170	HL_63693.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	8	1
171	HL_73051.1 View exemplar Basepair signature: cWW-cWW-cWH-cWH History status: Exact match G-quadruplex fragment (1)	8	1
172	HL_96283.1 View exemplar Basepair signature: cWW History status: Exact match Mini UNCG with extended bulge (1)	3	1
173	HL_05832.1 View exemplar Basepair signature: cWW-cWW-tSW-R History status: Exact match	7	1
174	HL_36552.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
175	HL_48636.1 View exemplar Basepair signature: cWW-cWH-R History status: Exact match	6	1
176	HL_56500.1 View exemplar Basepair signature: cWW-cWW-F-cSH-F-F History status: Exact match	0	1
177	HL_09712.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
178	HL_32255.1 View exemplar Basepair signature: cWW-tWW-F-F-cWW-F-F History status: Exact match	0	1
179	HL_50374.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
180	HL_59297.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
181	HL_70505.1 View exemplar Basepair signature: cWW-cWW-tWW-R-R-R-R-R History status: Exact match	11	1
182	HL_82851.1 View exemplar Basepair signature: cWW-bif-tSH-R-R-R History status: Exact match Anticodon loop related (1)	9	1
183	HL_93436.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match T-loop with 2 stacked bulged bases (1)	7	1
184	HL_02930.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	10	1
185	HL_14725.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R History status: Exact match	9	1
186	HL_24454.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
187	HL_34680.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
188	HL_44769.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	8	1
189	HL_53189.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	0	1
190	HL_64899.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
191	HL_73235.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
192	HL_96423.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R History status: Exact match	10	1
193	HL_17956.1 View exemplar Basepair signature: cWW-tSH-tHS-R-R History status: Exact match	8	1
194	HL_28843.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry with G-bulge (1)	14	1
195	HL_48909.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: Exact match Anticodon loop related (1)	9	1
196	HL_68478.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
197	HL_01187.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
198	HL_09892.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	6	1
199	HL_20891.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	1
200	HL_41285.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
201	HL_59445.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
202	HL_70682.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	0	1
203	HL_83007.1 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	1
204	HL_93573.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
205	HL_03427.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
206	HL_14859.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
207	HL_34974.1 View exemplar Basepair signature: cWW-tSW-R-R History status: Exact match UNCG variation (1)	6	1
208	HL_44911.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
209	HL_53499.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
210	HL_96487.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
211	HL_06137.1 View exemplar Basepair signature: cWW-R-cWH-cHW-cHW-cWH-cHW-cWH-R-cWH-cWH-R-cWH-cWH History status: Exact match G-quadruplex (1)	16	1
212	HL_48962.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	1
213	HL_79472.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match Pseudoknot geometry (1)	7	1
214	HL_90961.1 View exemplar Basepair signature: cWW-tSW History status: Exact match	4	1
215	HL_01253.1 View exemplar Basepair signature: cWW-tSS-R-R History status: Exact match	6	1
216	HL_10536.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: Exact match	10	1
217	HL_21000.1 View exemplar Basepair signature: cWW-tSH-tSH-R-R History status: Exact match GNRA wlth tandem sheared (1)	8	1
218	HL_41739.1 View exemplar Basepair signature: cWW-tWW-R-R-R History status: Exact match	7	1
219	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
220	HL_83225.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
221	HL_03603.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	15	1
222	HL_25183.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
223	HL_35010.1 View exemplar Basepair signature: cWW-tHH-cSH-R-R History status: Exact match	8	1
224	HL_66703.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: Exact match	7	1
225	HL_18495.1 View exemplar Basepair signature: cWW-cWW-cSH-F-F History status: Exact match	8	1
226	HL_37694.1 View exemplar Basepair signature: cWW-cWW-R-tSH-R-R History status: Exact match T-loop related (1)	9	1
227	HL_49194.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
228	HL_79564.1 View exemplar Basepair signature: cWW-tSH-cWH-cHW-R-cHW-cWH-cHW-cWH-tSH-cHW-R-cWH-cWH-cHW-cWH-cWH-tSH-R-R History status: Exact match G-quadruplex (1)	22	1
229	HL_91131.1 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match tRNA anticodon loop (1)	7	1
230	HL_22443.1 View exemplar Basepair signature: cWW-R-tWH-R-tWH-R-R-R History status: Exact match	11	1
231	HL_94032.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	0	1
232	HL_03846.1 View exemplar Basepair signature: cWW-L-cWW-R-R-R-R-R History status: Exact match	11	1
233	HL_35183.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
234	HL_46463.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
235	HL_66902.1 View exemplar Basepair signature: cWW-cWS-R-R-R-R-R History status: Exact match tRNA D-loop (1)	9	1
236	HL_74088.1 View exemplar Basepair signature: cWW-tSW-R-cWH-cHW-cHW-cWH-cHW-cWH-R-cWH-cWH-cWH-cWH-R History status: Exact match G-quadruplex (1)	18	1
237	HL_96854.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	1
238	HL_06645.1 View exemplar Basepair signature: cWW-cWW-R History status: Exact match	6	1
239	HL_30541.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
240	HL_37846.1 View exemplar Basepair signature: cWW-tWW-R-R-R History status: Exact match Pseudoknot (1)	7	1
241	HL_57204.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG related (1)	0	1
242	HL_68863.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	1
243	HL_01925.1 View exemplar Basepair signature: cWW-tSH-cWH-cHW-cHW-cWH-cHW-cWH-tSH-cHW-cWH-cWH-cHW-cWH-cWH-R-R History status: Exact match G-quadruplex (1)	19	1
244	HL_12053.1 View exemplar Basepair signature: cWW-tSH-R History status: Exact match	5	1
245	HL_42211.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R History status: Exact match	13	1
246	HL_51090.1 View exemplar Basepair signature: cWW-cWS-R-R History status: Exact match tRNA D-loop (1)	6	1
247	HL_60326.1 View exemplar Basepair signature: cWW-cWW-tWH-R-R-R History status: Exact match	9	1
248	HL_72066.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R History status: Exact match	8	1
249	HL_83704.1 View exemplar Basepair signature: cWW-R-R-cSS-R History status: Exact match	8	1
250	HL_16419.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
251	HL_25660.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	6	1
252	HL_67044.1 View exemplar Basepair signature: cWW-cWW-R-R-R History status: Exact match	8	1
253	HL_76360.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
254	HL_07268.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	1
255	HL_18785.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
256	HL_30585.1 View exemplar Basepair signature: cWW-R-R-R-cSS-R-cSW-R-R-R-R-R History status: Exact match	16	1
257	HL_38011.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R History status: Exact match	13	1
258	HL_49213.1 View exemplar Basepair signature: cWW-tSH-tHW-R-R-R-R History status: Exact match	10	1
259	HL_58200.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
260	HL_02319.1 View exemplar Basepair signature: cWW-tWH-R-R-R-R-R History status: Exact match	9	1
261	HL_22515.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
262	HL_42671.1 View exemplar Basepair signature: cWW-R-R-tSS-R-R-R-R History status: Exact match	11	1
263	HL_51284.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	1
264	HL_60357.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
265	HL_72419.1 View exemplar Basepair signature: cWW-tSH-tHH-R-R-R-R-R History status: Exact match	11	1
266	HL_04182.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: Exact match	10	1
267	HL_35888.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	0	1
268	HL_55046.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
269	HL_88858.1 View exemplar Basepair signature: cWW-bif-tSW History status: Exact match	6	1
270	HL_97733.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	0	1
271	HL_38513.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	10	1
272	HL_49223.1 View exemplar Basepair signature: cWW-tHH-R-R-R History status: Exact match	7	1
273	HL_58446.1 View exemplar Basepair signature: cWW-R-R-R-R-R-tSW-R-R History status: Exact match	12	1
274	HL_69459.1 View exemplar Basepair signature: cWW History status: Exact match	2	1
275	HL_22576.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match	10	1
276	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	0	1
277	HL_84861.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: Exact match	0	1
278	HL_94607.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
279	HL_26129.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R History status: Exact match	11	1
280	HL_46771.1 View exemplar Basepair signature: cWW-tSS-F-F-F History status: Exact match	0	1
281	HL_67205.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
282	HL_77081.1 View exemplar Basepair signature: cWW-cSW-R History status: Exact match	5	1
283	HL_98248.1 View exemplar Basepair signature: cWW-cSH-tHW-R-R-R History status: Exact match	10	1
284	HL_19239.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	0	1
285	HL_30819.1 View exemplar Basepair signature: cWW-cSH-tSS-R-R History status: Exact match Anticodon loop related (1)	8	1
286	HL_49638.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
287	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	0	1
288	HL_69677.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
289	HL_81820.1 View exemplar Basepair signature: cWW-tSH-tHW-tHW-cSH-F History status: Exact match	11	1
290	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	0	1
291	HL_02483.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	0	1
292	HL_12710.1 View exemplar Basepair signature: cWW-cSH-cWW-R-R-tSH-R-R-R-R-R History status: Exact match	15	1
293	HL_23090.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: Exact match	8	1
294	HL_52240.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
295	HL_72646.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
296	HL_85984.1 View exemplar Basepair signature: cWW-L-R-R-L-cWW-cWW-R-R-R History status: Exact match	14	1
297	HL_26501.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: Exact match	8	1
298	HL_98252.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	0	1
299	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	0	1
300	HL_08291.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-R-R-R History status: Exact match	11	1
301	HL_39228.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
302	HL_49816.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
303	HL_58733.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R History status: Exact match	12	1
304	HL_82131.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
305	HL_12773.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R History status: Exact match	13	1
306	HL_23219.1 View exemplar Basepair signature: cWW-tSW-cWH-R-cSH History status: Exact match	6	1
307	HL_33612.1 View exemplar Basepair signature: cWW-cWH-R-R History status: Exact match	6	1
308	HL_43488.1 View exemplar Basepair signature: cWW-L-R-cWW-R-R-R-R History status: Exact match	11	1
309	HL_52657.1 View exemplar Basepair signature: cWW-tSH-tSH-bif-R-R-R-R-R-R-R History status: Exact match	15	1
310	HL_95237.1 View exemplar Basepair signature: cWW-R History status: Exact match	4	1
311	HL_05667.1 View exemplar Basepair signature: cWW History status: Exact match	3	1
312	HL_36095.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	1
313	HL_56089.1 View exemplar Basepair signature: cWW-cWW-R-R History status: Exact match	7	1
314	HL_90197.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1