2JL8 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2JL8_001 | 1/A/59:68 | No text annotation Not in a motif group | geometric HL_7RQB_001 HL_99167.1 | |
| HL_2JL8_002 | 1/A/87:95 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_2JL8_003 | 1/A/123:128 | No text annotation Not in a motif group | geometric HL_5J7L_136 HL_75407.1 | |
| HL_2JL8_004 | 1/A/139:142A | No text annotation Not in a motif group | geometric HL_7RQB_004 HL_79921.2 | |
| HL_2JL8_005 | 1/A/154:172 | No text annotation Not in a motif group | ||
| HL_2JL8_006 | 1/A/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_2JL8_007 | 1/A/225:230 | No text annotation Not in a motif group | geometric HL_7RQB_007 HL_02862.2 | |
| HL_2JL8_008 | 1/A/246:252 | No text annotation Not in a motif group | geometric HL_4WF9_008 HL_67216.7 | |
| HL_2JL8_009 | 1/A/271J:271M | No text annotation Not in a motif group | ||
| HL_2JL8_010 | 1/A/305:312 | No text annotation Not in a motif group | geometric HL_7RQB_010 HL_89380.2 | |
| HL_2JL8_011 | 1/A/319:323 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_75407.1 | |
| HL_2JL8_012 | 1/A/327:335 | No text annotation Not in a motif group | geometric HL_7RQB_012 HL_08002.8 | |
| HL_2JL8_013 | 1/A/382:392 | No text annotation Not in a motif group | geometric HL_7RQB_013 HL_91503.4 | |
| HL_2JL8_014 | 1/A/410:417 | No text annotation Not in a motif group | geometric HL_7RQB_014 HL_96598.1 | |
| HL_2JL8_015 | 1/A/462:467 | No text annotation Not in a motif group | geometric HL_7RQB_015 HL_42097.1 | |
| HL_2JL8_016 | 1/A/487:493 | No text annotation Not in a motif group | geometric HL_7RQB_016 HL_42097.1 | |
| HL_2JL8_017 | 1/A/543:549 | GNRA Not in a motif group | geometric HL_4V9F_028 HL_42097.1 | |
| HL_2JL8_018 | 1/A/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_89380.2 | |
| HL_2JL8_019 | 1/A/612:615 | No text annotation Not in a motif group | geometric HL_7RQB_019 HL_32369.1 | |
| HL_2JL8_020 | 1/A/629:634 | No text annotation Not in a motif group | geometric HL_7RQB_020 HL_42097.1 | |
| HL_2JL8_021 | 1/A/641:647 | GNRA with one bulged base Not in a motif group | geometric HL_4WF9_021 HL_42097.1 | |
| HL_2JL8_022 | 1/A/654H:654M | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_09829.1 | |
| HL_2JL8_023 | 1/A/712:719 | No text annotation Not in a motif group | geometric HL_7RQB_022 HL_84085.2 | |
| HL_2JL8_024 | 1/A/744:753 | No text annotation Not in a motif group | geometric HL_7RQB_023 HL_39334.6 | |
| HL_2JL8_025 | 1/A/779:785 | No text annotation Not in a motif group | geometric HL_7A0S_023 HL_27930.1 | |
| HL_2JL8_026 | 1/A/826:831 | No text annotation Not in a motif group | geometric HL_7RQB_025 HL_64365.1 | |
| HL_2JL8_027 | 1/A/879:898 | No text annotation Not in a motif group | ||
| HL_2JL8_028 | 1/A/955:962 | No text annotation Not in a motif group | geometric HL_7RQB_027 HL_42097.1 | |
| HL_2JL8_029 | 1/A/978:985 | No text annotation Not in a motif group | geometric HL_7RQB_028 HL_64430.2 | |
| HL_2JL8_030 | 1/A/1064:1074 | No text annotation Not in a motif group | geometric HL_5D8H_001 HL_07145.1 | |
| HL_2JL8_031 | 1/A/1091:1100 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_2JL8_032 | 1/A/1171:1178 | No text annotation Not in a motif group | ||
| HL_2JL8_033 | 1/A/1222:1227 | No text annotation Not in a motif group | geometric HL_7RQB_032 HL_42097.1 | |
| HL_2JL8_034 | 1/A/1281:1289 | No text annotation Not in a motif group | geometric HL_7RQB_033 HL_89380.2 | |
| HL_2JL8_035 | 1/A/1324:1330 | No text annotation Not in a motif group | geometric HL_4WF9_033 HL_46680.1 | |
| HL_2JL8_036 | 1/A/1363:1368 | Other HL Not in a motif group | geometric HL_5J7L_167 HL_87030.2 | |
| HL_2JL8_037 | 1/A/1389:1398 | No text annotation Not in a motif group | geometric HL_7RQB_036 HL_69023.2 | |
| HL_2JL8_038 | 1/A/1450A:1461 | No text annotation Not in a motif group | ||
| HL_2JL8_039 | 1/A/1492:1498 | No text annotation Not in a motif group | ||
| HL_2JL8_040 | 1/A/1526:1546 | Other HL Not in a motif group | geometric HL_2CZJ_007 HL_53845.1 | |
| HL_2JL8_041 | 1/A/1565:1568 | No text annotation Not in a motif group | geometric HL_7RQB_039 HL_38927.2 | |
| HL_2JL8_042 | 1/A/1612:1619 | No text annotation Not in a motif group | geometric HL_7RQB_040 HL_64430.2 | |
| HL_2JL8_043 | 1/A/1631:1635 | No text annotation Not in a motif group | geometric HL_7RQB_041 HL_01057.1 | |
| HL_2JL8_044 | 1/A/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_2JL8_045 | 1/A/1719:1743 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_2JL8_046 | 1/A/1752:1756 | No text annotation Not in a motif group | geometric HL_7RQB_044 HL_76539.2 | |
| HL_2JL8_047 | 1/A/1777:1787 | No text annotation Not in a motif group | geometric HL_5J7L_178 HL_43613.5 | |
| HL_2JL8_048 | 1/A/1806:1811 | No text annotation Not in a motif group | geometric HL_7RQB_046 HL_42097.1 | |
| HL_2JL8_049 | 1/A/1864:1878 | No text annotation Not in a motif group | geometric HL_7RQB_047 HL_42097.1 | |
| HL_2JL8_050 | 1/A/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_2JL8_051 | 1/A/1949:1957 | No text annotation Not in a motif group | geometric HL_7RQB_049 HL_51824.1 | |
| HL_2JL8_052 | 1/A/2027:2036 | No text annotation Not in a motif group | geometric HL_7RQB_050 HL_90642.6 | |
| HL_2JL8_053 | 1/A/2127:2161 | No text annotation Not in a motif group | ||
| HL_2JL8_054 | 1/A/2205:2219 | No text annotation Not in a motif group | geometric HL_5TBW_004 HL_98426.1 | |
| HL_2JL8_055 | 1/A/2248:2256 | No text annotation Not in a motif group | geometric HL_4WF9_049 HL_53171.2 | |
| HL_2JL8_056 | 1/A/2264:2276 | No text annotation Not in a motif group | geometric HL_7RQB_054 HL_19870.6 | |
| HL_2JL8_057 | 1/A/2303:2313 | No text annotation Not in a motif group | ||
| HL_2JL8_058 | 1/A/2324:2331 | No text annotation Not in a motif group | geometric HL_7RQB_056 HL_12078.2 | |
| HL_2JL8_059 | 1/A/2355:2362 | No text annotation Not in a motif group | geometric HL_7RQB_057 HL_09136.1 | |
| HL_2JL8_060 | 1/A/2374:2379 | No text annotation Not in a motif group | geometric HL_7RQB_058 HL_42097.1 | |
| HL_2JL8_061 | 1/A/2404:2413 | No text annotation Not in a motif group | geometric HL_7RQB_059 HL_30784.2 | |
| HL_2JL8_062 | 1/A/2471:2479 | No text annotation Not in a motif group | geometric HL_7RQB_060 HL_06192.2 | |
| HL_2JL8_063 | 1/A/2528:2535 | No text annotation Not in a motif group | geometric HL_7RQB_061 HL_88526.2 | |
| HL_2JL8_064 | 1/A/2551:2557 | No text annotation Not in a motif group | geometric HL_4WF9_058 HL_43656.2 | |
| HL_2JL8_065 | 1/A/2594:2599 | No text annotation Not in a motif group | geometric HL_7RQB_063 HL_42097.1 | |
| HL_2JL8_066 | 1/A/2658:2663 | No text annotation Not in a motif group | geometric HL_5J7L_179 HL_42097.1 | |
| HL_2JL8_067 | 1/A/2701:2706 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_2JL8_068 | 1/A/2745:2759 | No text annotation Not in a motif group | geometric HL_7RQB_066 HL_56677.7 | |
| HL_2JL8_069 | 1/A/2792:2804 | No text annotation Not in a motif group | ||
| HL_2JL8_070 | 1/A/2819:2827 | No text annotation Not in a motif group | geometric HL_7RQB_068 HL_27930.1 | |
| HL_2JL8_071 | 1/A/2856:2861 | No text annotation Not in a motif group | geometric HL_7RQB_069 HL_42097.1 | |
| HL_2JL8_072 | 1/B/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_2JL8_073 | 1/B/86:91 | No text annotation Not in a motif group | geometric HL_7RQB_071 HL_42097.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2JL8_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
| IL_2JL8_002 | 1/A/36:37, 1/A/442:444 | Single bulged A Not in a motif group | geometric IL_7RQB_002 IL_37497.2 | |
| IL_2JL8_003 | 1/A/42:43, 1/A/434:436 | Minor groove platform Not in a motif group | geometric IL_7RQB_003 IL_42622.2 | |
| IL_2JL8_004 | 1/A/81:85, 1/A/97:105 | Kink-turn Not in a motif group | geometric IL_7RQB_004 IL_45067.2 | |
| IL_2JL8_005 | 1/A/183:184, 1/A/212:214 | Single stack bend Not in a motif group | geometric IL_7RQB_005 IL_76488.2 | |
| IL_2JL8_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_2JL8_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_007 IL_76042.2 | |
| IL_2JL8_008 | 1/A/271I:271J, 1/A/271M:271O | Single bulged U Not in a motif group | geometric IL_5FQ5_002 IL_83039.13 | |
| IL_2JL8_009 | 1/A/272D:272F, 1/A/363D:364 | No text annotation Not in a motif group | geometric IL_4V9F_072 IL_63450.2 | |
| IL_2JL8_010 | 1/A/272J:280, 1/A/360:363 | No text annotation Not in a motif group | ||
| IL_2JL8_011 | 1/A/280:284, 1/A/357:360 | tSH-tHW Not in a motif group | geometric IL_7RQB_011 IL_04059.1 | |
| IL_2JL8_012 | 1/A/287:290, 1/A/350:354 | Double sheared Not in a motif group | geometric IL_5TBW_114 IL_09705.9 | |
| IL_2JL8_013 | 1/A/293:295, 1/A/343:347 | No text annotation Not in a motif group | geometric IL_7RQB_013 IL_69440.1 | |
| IL_2JL8_014 | 1/A/481:484, 1/A/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_2JL8_015 | 1/A/564:566, 1/A/575:577 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_2JL8_016 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack Not in a motif group | geometric IL_7RQB_016 IL_17136.1 | |
| IL_2JL8_017 | 1/A/672:674, 1/A/806:808 | No text annotation Not in a motif group | geometric IL_7A0S_014 IL_95997.1 | |
| IL_2JL8_018 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.6 | |
| IL_2JL8_019 | 1/A/697:698, 1/A/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_2JL8_020 | 1/A/702:703, 1/A/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
| IL_2JL8_021 | 1/A/703:707, 1/A/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_2JL8_022 | 1/A/738:741, 1/A/756:758 | Major groove platform with extra cWW Not in a motif group | geometric IL_7A0S_019 IL_05564.2 | |
| IL_2JL8_023 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_2JL8_024 | 1/A/837:838, 1/A/940:942 | Single stack bend Not in a motif group | geometric IL_4WF9_028 IL_92001.1 | |
| IL_2JL8_025 | 1/A/844:846, 1/A/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_2JL8_026 | 1/A/846:850, 1/A/927:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_2JL8_027 | 1/A/858:862, 1/A/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_38862.1 | |
| IL_2JL8_028 | 1/A/862:863, 1/A/913:915 | Minor groove platform Not in a motif group | geometric IL_7A0S_028 IL_42622.2 | |
| IL_2JL8_029 | 1/A/864:868, 1/A/909:912 | C-loop Not in a motif group | geometric IL_7RQB_029 IL_02509.1 | |
| IL_2JL8_030 | 1/A/870:872, 1/A/905:907 | Isolated cWS basepair Not in a motif group | geometric IL_7RQB_030 IL_52767.2 | |
| IL_2JL8_031 | 1/A/875:877, 1/A/899:902 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_2JL8_032 | 1/A/877:879, 1/A/898:899 | Minor groove platform Not in a motif group | geometric IL_7RQB_032 IL_93353.1 | |
| IL_2JL8_033 | 1/A/952:954, 1/A/963:965 | No text annotation Not in a motif group | geometric IL_7RQB_034 IL_95997.1 | |
| IL_2JL8_034 | 1/A/994:996, 1/A/1159:1160 | Single bulged C Not in a motif group | geometric IL_7RQB_035 IL_61258.12 | |
| IL_2JL8_035 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN Not in a motif group | geometric IL_7RQB_036 IL_89002.2 | |
| IL_2JL8_036 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_2JL8_037 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_2JL8_038 | 1/A/1018:1024, 1/A/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_2JL8_039 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_2JL8_040 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4WF9_041 IL_82068.2 | |
| IL_2JL8_041 | 1/A/1043:1053, 1/A/1106:1112 | No text annotation Not in a motif group | ||
| IL_2JL8_042 | 1/A/1059:1062, 1/A/1076:1079 | No text annotation Not in a motif group | geometric IL_6PRV_001 IL_23544.2 | |
| IL_2JL8_043 | 1/A/1087:1091, 1/A/1100:1102 | Major groove platform with extra cWW Not in a motif group | geometric IL_1MMS_002 IL_05564.2 | |
| IL_2JL8_044 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair Not in a motif group | geometric IL_7RQB_045 IL_52767.2 | |
| IL_2JL8_045 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation Not in a motif group | geometric IL_7RQB_046 IL_68574.2 | |
| IL_2JL8_046 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn Not in a motif group | geometric IL_7RQB_047 IL_70923.2 | |
| IL_2JL8_047 | 1/A/1219:1221, 1/A/1229:1230 | Single bulged A Not in a motif group | geometric IL_7RQB_048 IL_37497.2 | |
| IL_2JL8_048 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_049 IL_04346.7 | |
| IL_2JL8_049 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_050 IL_50694.2 | |
| IL_2JL8_050 | 1/A/1319:1323, 1/A/1331:1333 | C-loop Not in a motif group | geometric IL_7RQB_051 IL_63596.6 | |
| IL_2JL8_051 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN Not in a motif group | geometric IL_7RQB_052 IL_89002.2 | |
| IL_2JL8_052 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_418 IL_17136.1 | |
| IL_2JL8_053 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation Not in a motif group | geometric IL_7RQB_054 IL_67474.4 | |
| IL_2JL8_054 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN Not in a motif group | geometric IL_5J7L_295 IL_89002.2 | |
| IL_2JL8_055 | 1/A/1433:1435, 1/A/1557:1560 | Isolated tWW turn Not in a motif group | geometric IL_7RQB_056 IL_54997.7 | |
| IL_2JL8_056 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW Not in a motif group | geometric IL_7RQB_057 IL_04059.1 | |
| IL_2JL8_057 | 1/A/1448:1450, 1/A/1462:1463 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_2JL8_058 | 1/A/1469:1473, 1/A/1518:1523 | UAA/GAN Not in a motif group | geometric IL_7RQB_060 IL_07235.1 | |
| IL_2JL8_059 | 1/A/1481:1482, 1/A/1506:1510 | No text annotation Not in a motif group | geometric IL_7RQB_061 IL_52493.1 | |
| IL_2JL8_060 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A Not in a motif group | geometric IL_2OZB_001 IL_37497.2 | |
| IL_2JL8_061 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation Not in a motif group | geometric IL_7RQB_064 IL_12566.2 | |
| IL_2JL8_062 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn Not in a motif group | geometric IL_7RQB_065 IL_54997.7 | |
| IL_2JL8_063 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_2JL8_064 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_2JL8_065 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_2JL8_066 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A Not in a motif group | geometric IL_7RQB_069 IL_37497.2 | |
| IL_2JL8_067 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related Not in a motif group | geometric IL_7RQB_070 IL_17069.3 | |
| IL_2JL8_068 | 1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_4V9F_066 IL_88739.1 | |
| IL_2JL8_069 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_5J7L_315 IL_16396.2 | |
| IL_2JL8_070 | 1/A/1846:1849, 1/A/1893:1894 | Minor groove platform Not in a motif group | geometric IL_7RQB_073 IL_88739.1 | |
| IL_2JL8_071 | 1/A/1851:1855, 1/A/1887:1891 | UAA/GAN with extra pair Not in a motif group | geometric IL_4WF9_073 IL_90318.1 | |
| IL_2JL8_072 | 1/A/1856:1860, 1/A/1882:1886 | Triple sheared Not in a motif group | geometric IL_7RQB_075 IL_56467.8 | |
| IL_2JL8_073 | 1/A/1933:1934, 1/A/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_2JL8_074 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_2JL8_075 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform Not in a motif group | geometric IL_7RQB_078 IL_27635.1 | |
| IL_2JL8_076 | 1/A/2054:2057, 1/A/2611:2615 | No text annotation Not in a motif group | geometric IL_7RQB_079 IL_01206.1 | |
| IL_2JL8_077 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U Not in a motif group | geometric IL_7RQB_080 IL_83039.13 | |
| IL_2JL8_078 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform Not in a motif group | geometric IL_7RQB_081 IL_42622.2 | |
| IL_2JL8_079 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_2JL8_080 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation Not in a motif group | geometric IL_7RQB_083 IL_95997.1 | |
| IL_2JL8_081 | 1/A/2105:2110, 1/A/2179:2184 | No text annotation Not in a motif group | ||
| IL_2JL8_082 | 1/A/2110:2122, 1/A/2176:2179 | No text annotation Not in a motif group | ||
| IL_2JL8_083 | 1/A/2124:2127, 1/A/2161:2174 | No text annotation Not in a motif group | geometric IL_3U4M_003 IL_75283.2 | |
| IL_2JL8_084 | 1/A/2297:2299, 1/A/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 IL_38958.7 | |
| IL_2JL8_085 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared Not in a motif group | geometric IL_7RQB_089 IL_09705.9 | |
| IL_2JL8_086 | 1/A/2401:2403, 1/A/2414:2415 | No text annotation Not in a motif group | ||
| IL_2JL8_087 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_2JL8_088 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_2JL8_089 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_2JL8_090 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
| IL_2JL8_091 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared Not in a motif group | geometric IL_7RQB_095 IL_56467.8 | |
| IL_2JL8_092 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform Not in a motif group | geometric IL_4WF9_094 IL_76223.2 | |
| IL_2JL8_093 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.2 | |
| IL_2JL8_094 | 1/A/2512:2513, 1/A/2571:2574 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
| IL_2JL8_095 | 1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation Not in a motif group | geometric IL_7RQB_099 IL_95601.3 | |
| IL_2JL8_096 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A Not in a motif group | geometric IL_1U9S_001 IL_37497.2 | |
| IL_2JL8_097 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW Not in a motif group | geometric IL_7RQB_102 IL_04638.1 | |
| IL_2JL8_098 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_16458.1 | |
| IL_2JL8_099 | 1/A/2680:2684, 1/A/2725:2727 | C-loop Not in a motif group | geometric IL_7RQB_104 IL_63596.6 | |
| IL_2JL8_100 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation Not in a motif group | geometric IL_7RQB_105 IL_08296.3 | |
| IL_2JL8_101 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_106 IL_71530.2 | |
| IL_2JL8_102 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | geometric IL_7RQB_107 IL_49767.5 | |
| IL_2JL8_103 | 1/A/2838:2839, 1/A/2878:2880 | Single bulged C Not in a motif group | geometric IL_7RQB_108 IL_61258.12 | |
| IL_2JL8_104 | 1/A/2843:2846, 1/A/2870:2874 | No text annotation Not in a motif group | geometric IL_7RQB_109 IL_58764.3 | |
| IL_2JL8_105 | 1/A/2847:2852, 1/A/2865:2869 | No text annotation Not in a motif group | geometric IL_7RQB_110 IL_83162.5 | |
| IL_2JL8_106 | 1/B/17:18, 1/B/65:67 | Major groove intercalation Not in a motif group | geometric IL_4WF9_112 IL_37497.2 | |
| IL_2JL8_107 | 1/B/23:28, 1/B/56:60 | No text annotation Not in a motif group | geometric IL_5J7L_356 IL_18472.2 | |
| IL_2JL8_108 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_7RQB_113 IL_09061.6 | |
| IL_2JL8_109 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_2JL8_110 | 1/B/71:79, 1/B/98:106 | Bacterial 5S Loop E Not in a motif group | geometric IL_7RQB_115 IL_56455.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2JL8_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation Not in a motif group | ||
| J3_2JL8_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation Not in a motif group | ||
| J3_2JL8_003 | 1/A/269:271B, 1/A/271V:272B, 1/A/366:370 | No text annotation Not in a motif group | ||
| J3_2JL8_004 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation Not in a motif group | ||
| J3_2JL8_005 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation Not in a motif group | ||
| J3_2JL8_006 | 1/A/1055:1057, 1/A/1081:1087, 1/A/1102:1104 | No text annotation Not in a motif group | ||
| J3_2JL8_007 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation Not in a motif group | ||
| J3_2JL8_008 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation Not in a motif group | ||
| J3_2JL8_009 | 1/A/1344:1350, 1/A/1381:1385, 1/A/1402:1403 | No text annotation Not in a motif group | ||
| J3_2JL8_010 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | No text annotation Not in a motif group | ||
| J3_2JL8_011 | 1/A/2295:2297, 1/A/2321:2323, 1/A/2332:2337 | No text annotation Not in a motif group | ||
| J3_2JL8_012 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation Not in a motif group | ||
| J3_2JL8_013 | 1/A/2814:2815, 1/A/2831:2836, 1/A/2882:2886 | No text annotation Not in a motif group | ||
| J3_2JL8_014 | 1/B/11:16, 1/B/68:69, 1/B/108:110 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: