5LL6 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5LL6_001 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_5LL6_002 | 1/2/70:81 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_5LL6_003 | 1/2/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_5LL6_004 | 1/2/190:195 | No text annotation | geometric HL_4V88_198 NA | |
| HL_5LL6_005 | 1/2/230:235 | No text annotation | geometric HL_4V88_198 NA | |
| HL_5LL6_006 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_5LL6_007 | 1/2/276:279 | Mini UNCG | homologous HL_4V88_192 NA | |
| HL_5LL6_008 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_5LL6_009 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_5LL6_010 | 1/2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_5LL6_011 | 1/2/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_5LL6_012 | 1/2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_5LL6_013 | 1/2/491:496 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_5LL6_014 | 1/2/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_5LL6_015 | 1/2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_5LL6_017 | 1/2/703:736 | No text annotation | ||
| HL_5LL6_018 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_5LL6_019 | 1/2/777:783 | No text annotation | ||
| HL_5LL6_020 | 1/2/825:847 | No text annotation | ||
| HL_5LL6_021 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_5LL6_022 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_5LL6_023 | 1/2/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_5LL6_024 | 1/2/1055:1064 | No text annotation | homologous HL_8P9A_212 HL_97917.2 | |
| HL_5LL6_025 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_5LL6_026 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_5LL6_027 | 1/2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_5LL6_029 | 1/2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5LL6_030 | No text annotation | ||
| HL_5LL6_016 | No text annotation | ||
| HL_5LL6_028 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5LL6_001 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_5LL6_002 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_5LL6_003 | 1/2/37:41, 1/2/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_5LL6_004 | 1/2/42:48, 1/2/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_5LL6_005 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_5LL6_006 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_5LL6_007 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_5LL6_008 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_5LL6_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_5LL6_010 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_5LL6_011 | 1/2/144:149, 1/2/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
| IL_5LL6_012 | 1/2/150:152, 1/2/162:164 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10167.6 | |
| IL_5LL6_013 | 1/2/186:189, 1/2/196:199 | Double sheared | homologous IL_4V88_396 NA | |
| IL_5LL6_014 | 1/2/204:206, 1/2/259:263 | Isolated non-canonical cWW pair | geometric IL_4V88_457 NA | |
| IL_5LL6_069 | 1/2/204:207, 1/2/257:263 | No text annotation | ||
| IL_5LL6_015 | 1/2/206:207, 1/2/257:259 | Not an internal loop | geometric IL_4UYK_002 NA | |
| IL_5LL6_016 | 1/2/207:209, 1/2/256:257 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_5LL6_017 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_5LL6_018 | 1/2/270:273, 1/2/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_5LL6_019 | 1/2/275:276, 1/2/279:281 | Single bulged U | geometric IL_5FQ5_002 IL_89505.4 | |
| IL_5LL6_020 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_5LL6_021 | 1/2/318:323, 1/2/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_5LL6_022 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_5LL6_023 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_5LL6_024 | 1/2/411:413, 1/2/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_5LL6_025 | 1/2/439:441, 1/2/463:464 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_5LL6_026 | 1/2/443:447, 1/2/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_5LL6_027 | 1/2/447:448, 1/2/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_5LL6_028 | 1/2/481:482, 1/2/505:507 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_5LL6_029 | 1/2/514:516, 1/2/536:543 | No text annotation | ||
| IL_5LL6_030 | 1/2/517:518, 1/2/533:535 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_5LL6_031 | 1/2/518:520, 1/2/532:533 | Minor groove platform | homologous IL_4V88_412 NA | |
| IL_5LL6_032 | 1/2/550:557, 1/2/587:588 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_5LL6_033 | 1/2/557:559, 1/2/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_5LL6_034 | 1/2/562:568, 1/2/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_5LL6_070 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_8P9A_405 IL_38186.6 | |
| IL_5LL6_035 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_5LL6_036 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_5LL6_037 | 1/2/646:648, 1/2/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_5LL6_038 | 1/2/700:703, 1/2/736:738 | No text annotation | ||
| IL_5LL6_076 | 1/2/746:747, 1/2/802:805 | No text annotation | homologous IL_8CRE_428 IL_68140.4 | |
| IL_5LL6_040 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_5LL6_071 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_5LL6_072 | 1/2/816:822, 1/2/850:857 | No text annotation | ||
| IL_5LL6_042 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.7 | |
| IL_5LL6_043 | 1/2/868:870, 1/2/957:960 | Isolated non-canonical cWW pair | geometric IL_3TD0_002 IL_57744.1 | |
| IL_5LL6_073 | 1/2/871:873, 1/2/954:956 | Isolated non-canonical cWW pair | geometric IL_5TBW_068 NA | |
| IL_5LL6_045 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_5LL6_074 | 1/2/886:888, 1/2/924:926 | Isolated non-canonical cWW pair | geometric IL_4V88_472 NA | |
| IL_5LL6_047 | 1/2/893:899, 1/2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_5LL6_048 | 1/2/985:990, 1/2/1014:1016 | Other IL | homologous IL_4V88_435 NA | |
| IL_5LL6_049 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | geometric IL_7A0S_049 IL_17136.7 | |
| IL_5LL6_050 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_5LL6_077 | 1/2/1041:1044, 1/2/1074:1077 | No text annotation | homologous IL_8CRE_440 IL_85033.2 | |
| IL_5LL6_052 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_5LL6_053 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4LFB_034 IL_41756.4 | |
| IL_5LL6_054 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_5LL6_078 | 1/2/1149:1151, 1/2/1627:1628 | No text annotation | homologous IL_8CRE_444 IL_00225.13 | |
| IL_5LL6_057 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_5LL6_058 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_5LL6_059 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_5LL6_060 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | ||
| IL_5LL6_061 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_5LL6_062 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared | homologous IL_4V88_468 NA | |
| IL_5LL6_063 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_5LL6_064 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_5LL6_065 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | homologous IL_4V88_471 NA | |
| IL_5LL6_066 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_5TBW_068 NA | |
| IL_5LL6_067 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_5LL6_068 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | geometric IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5LL6_039 | Major groove minor groove platform with extra cWW | ||
| IL_5LL6_041 | No text annotation | ||
| IL_5LL6_044 | Tandem non-canonical cWW pairs | ||
| IL_5LL6_046 | Tandem non-canonical cWW pairs | ||
| IL_5LL6_051 | No text annotation | ||
| IL_5LL6_075 | 10x8 Sarcin-Ricin; G-bulge | ||
| IL_5LL6_055 | Tandem non-canonical cWW pairs | ||
| IL_5LL6_056 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5LL6_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | homologous J3_8C3A_082 NA | |
| J3_5LL6_006 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_5LL6_002 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_5LL6_007 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_5LL6_003 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_5LL6_004 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_5LL6_005 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | ||
| J4_5LL6_001 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_5LL6_002 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J5_5LL6_001 | 1/2/31:35, 1/2/473:479, 1/2/509:516, 1/2/536:546, 1/2/592:595 | No text annotation | ||
| J5_5LL6_002 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_5LL6_003 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:265, 1/2/289:293 | No text annotation | ||
| J5_5LL6_004 | 1/2/636:641, 1/2/693:703, 1/2/736:744, 1/2/807:816, 1/2/857:860 | No text annotation |
Problematic loops
No problematic loops
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