Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7ASN_0011/A/67:74No text annotation
Not in a motif group
homologous
HL_4WF9_001
HL_86769.3
HL_7ASN_0021/A/86:96No text annotation
Not in a motif group
HL_7ASN_0031/A/122:127No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_7ASN_0041/A/136:143No text annotation
Not in a motif group
homologous
HL_4WF9_004
HL_84085.2
HL_7ASN_0051/A/159:169No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_7ASN_0061/A/197:204No text annotation
Not in a motif group
geometric
HL_7RQB_006
HL_06192.2
HL_7ASN_0071/A/249:255No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_7ASN_0081/A/348:355No text annotation
Not in a motif group
homologous
HL_7A0S_010
HL_89380.2
HL_7ASN_0091/A/362:366No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_7ASN_0101/A/370:378No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_7ASN_0111/A/427:439No text annotation
Not in a motif group
HL_7ASN_0121/A/456:463No text annotation
Not in a motif group
homologous
HL_4WF9_014
HL_96598.1
HL_7ASN_0131/A/508:513No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_7ASN_0141/A/533:538No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_7ASN_0151/A/587:594No text annotation
Not in a motif group
homologous
HL_4WF9_017
HL_50318.1
HL_7ASN_0161/A/609:618T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_4WF9_018
HL_89380.2
HL_7ASN_0171/A/654:662No text annotation
Not in a motif group
HL_7ASN_0181/A/674:679No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_7ASN_0191/A/685:693No text annotation
Not in a motif group
HL_7ASN_0201/A/757:764No text annotation
Not in a motif group
HL_7ASN_0211/A/789:798No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_7ASN_0221/A/823:831No text annotation
Not in a motif group
HL_7ASN_0231/A/871:876No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_7ASN_0241/A/915:952No text annotation
Not in a motif group
HL_7ASN_0251/A/999:1006GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_42097.1
HL_7ASN_0261/A/1022:1029No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_7ASN_0271/A/1214:1218No text annotation
Not in a motif group
HL_7ASN_0281/A/1260:1265No text annotation
Not in a motif group
homologous
HL_7A0S_031
HL_87030.2
HL_7ASN_0291/A/1318:1326No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_7ASN_0301/A/1361:1367No text annotation
Not in a motif group
homologous
HL_4WF9_033
HL_46680.1
HL_7ASN_0311/A/1400:1405Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_7ASN_0321/A/1426:1435No text annotation
Not in a motif group
homologous
HL_4WF9_035
HL_69023.2
HL_7ASN_0331/A/1485:1598No text annotation
Not in a motif group
HL_7ASN_0341/A/1612:1615No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.2
HL_7ASN_0351/A/1656:1663No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_7ASN_0361/A/1673:1681No text annotation
Not in a motif group
HL_7ASN_0371/A/1735:1740UNCG
Not in a motif group
homologous
HL_4WF9_040
HL_03562.2
HL_7ASN_0381/A/1759:1770No text annotation
Not in a motif group
HL_7ASN_0391/A/1779:1783No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_7ASN_0401/A/1803:1815No text annotation
Not in a motif group
HL_7ASN_0411/A/1833:1838No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_7ASN_0421/A/1892:1904No text annotation
Not in a motif group
HL_7ASN_0431/A/1936:1948No text annotation
Not in a motif group
HL_7ASN_0441/A/1976:1985No text annotation
Not in a motif group
geometric
HL_2ZZN_004
HL_09136.1
HL_7ASN_0451/A/2054:2063No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_7ASN_0461/A/2156:2186No text annotation
Not in a motif group
HL_7ASN_0471/A/2236:2242No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_7ASN_0481/A/2275:2283No text annotation
Not in a motif group
homologous
HL_4WF9_049
HL_53171.2
HL_7ASN_0491/A/2291:2303No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.6
HL_7ASN_0501/A/2330:2340No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_10278.1
HL_7ASN_0511/A/2351:2358No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_7ASN_0521/A/2382:2389No text annotation
Not in a motif group
homologous
HL_4WF9_053
HL_09136.1
HL_7ASN_0531/A/2401:2406GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_42097.1
HL_7ASN_0541/A/2431:2440No text annotation
Not in a motif group
homologous
HL_7A0S_058
HL_30784.2
HL_7ASN_0551/A/2498:2506No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_7ASN_0561/A/2554:2563No text annotation
Not in a motif group
geometric
HL_7RQB_068
HL_27930.1
HL_7ASN_0571/A/2578:2584No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_7ASN_0581/A/2621:2626GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_42097.1
HL_7ASN_0591/A/2685:2690GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.1
HL_7ASN_0601/A/2726:2736No text annotation
Not in a motif group
HL_7ASN_0611/A/2772:2786No text annotation
Not in a motif group
HL_7ASN_0621/A/2836:2848No text annotation
Not in a motif group
HL_7ASN_0631/A/2865:2890No text annotation
Not in a motif group
HL_7ASN_0641/B/36:42No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_7ASN_0651/B/83:88No text annotation
Not in a motif group

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7ASN_0011/A/24:30,
1/A/555:561
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_4WF9_001
IL_66414.6
IL_7ASN_0021/A/36:37,
1/A/488:490
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.2
IL_7ASN_0031/A/42:44,
1/A/480:483
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_4WF9_003
IL_65006.1
IL_7ASN_0041/A/81:85,
1/A/97:104
Kink-turn
Not in a motif group
homologous
IL_7A0S_004
IL_45067.2
IL_7ASN_0051/A/152:153,
1/A/175:177
No text annotation
Not in a motif group
IL_7ASN_0061/A/186:187,
1/A/215:217
Major groove platform
Not in a motif group
geometric
IL_7A0S_085
IL_27635.1
IL_7ASN_0071/A/190:197,
1/A/204:212
9x8 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4WF9_008
IL_35728.2
IL_7ASN_0081/A/241:248,
1/A/256:262
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4WF9_009
IL_04346.7
IL_7ASN_0091/A/272:302,
1/A/415:416
No text annotation
Not in a motif group
IL_7ASN_0101/A/304:306,
1/A/409:413
No text annotation
Not in a motif group
IL_7ASN_0111/A/318:331,
1/A/395:401
No text annotation
Not in a motif group
IL_7ASN_0121/A/333:340,
1/A/384:393
No text annotation
Not in a motif group
IL_7ASN_0131/A/527:530,
1/A/541:554
No text annotation
Not in a motif group
homologous
IL_4WF9_015
IL_60992.6
IL_7ASN_0141/A/581:584,
1/A/597:600
Double sheared
Not in a motif group
homologous
IL_4WF9_016
IL_09705.9
IL_7ASN_0151/A/607:609,
1/A/618:620
No text annotation
Not in a motif group
homologous
IL_4WF9_017
IL_95997.1
IL_7ASN_0161/A/638:640,
1/A/705:707
No text annotation
Not in a motif group
homologous
IL_4WF9_018
IL_51629.2
IL_7ASN_0171/A/649:653,
1/A/663:667
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_7ASN_0181/A/717:719,
1/A/851:853
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_7ASN_0191/A/719:723,
1/A/844:851
No text annotation
Not in a motif group
homologous
IL_7A0S_015
IL_17470.6
IL_7ASN_0201/A/742:743,
1/A/808:810
Single bulged A
Not in a motif group
homologous
IL_4WF9_022
IL_37497.2
IL_7ASN_0211/A/747:754,
1/A/767:775
No text annotation
Not in a motif group
IL_7ASN_0221/A/783:785,
1/A/802:803
Major groove platform
Not in a motif group
homologous
IL_4WF9_026
IL_27635.1
IL_7ASN_0231/A/820:822,
1/A/832:836
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_7ASN_0241/A/881:883,
1/A/984:987
No text annotation
Not in a motif group
geometric
IL_4N0T_004
IL_46796.1
IL_7ASN_0251/A/889:893,
1/A/975:978
No text annotation
Not in a motif group
homologous
IL_4WF9_029
IL_06300.1
IL_7ASN_0261/A/895:899,
1/A/968:973
No text annotation
Not in a motif group
IL_7ASN_0271/A/901:908,
1/A/958:966
No text annotation
Not in a motif group
IL_7ASN_0281/A/909:913,
1/A/954:957
C-loop
Not in a motif group
homologous
IL_7A0S_029
IL_02509.1
IL_7ASN_0291/A/1038:1040,
1/A/1203:1204
Single bulged C
Not in a motif group
homologous
IL_4WF9_035
IL_61258.12
IL_7ASN_0301/A/1042:1046,
1/A/1197:1201
UAA/GAN
Not in a motif group
homologous
IL_7RQB_036
IL_89002.2
IL_7ASN_0311/A/1048:1055,
1/A/1194:1195
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_7ASN_0321/A/1055:1058,
1/A/1192:1194
Isolated cWH basepair
Not in a motif group
geometric
IL_5F5F_003
IL_51629.2
IL_7ASN_0331/A/1062:1074,
1/A/1168:1188
No text annotation
Not in a motif group
IL_7ASN_0341/A/1075:1078,
1/A/1165:1167
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4WF9_041
IL_82068.2
IL_7ASN_0351/A/1079:1086,
1/A/1157:1164
No text annotation
Not in a motif group
IL_7ASN_0361/A/1086:1096,
1/A/1151:1157
No text annotation
Not in a motif group
IL_7ASN_0371/A/1211:1214,
1/A/1218:1221
No text annotation
Not in a motif group
IL_7ASN_0381/A/1235:1237,
1/A/1285:1288
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_52767.2
IL_7ASN_0391/A/1243:1245,
1/A/1277:1279
Isolated cWH basepair
Not in a motif group
homologous
IL_4WF9_045
IL_51629.2
IL_7ASN_0401/A/1246:1253,
1/A/1272:1276
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_7ASN_0411/A/1257:1259,
1/A/1266:1268
Intercalated cWW
Not in a motif group
homologous
IL_4WF9_047
IL_82842.2
IL_7ASN_0421/A/1300:1307,
1/A/2038:2044
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4WF9_048
IL_04346.7
IL_7ASN_0431/A/1356:1360,
1/A/1368:1370
Major groove minor groove platform with tHH
Not in a motif group
homologous
IL_4WF9_050
IL_37712.2
IL_7ASN_0441/A/1388:1392,
1/A/1413:1417
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_7ASN_0451/A/1394:1398,
1/A/1407:1411
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_7ASN_0461/A/1476:1481,
1/A/1603:1608
No text annotation
Not in a motif group
IL_7ASN_0471/A/1481:1485,
1/A/1598:1603
No text annotation
Not in a motif group
IL_7ASN_0481/A/1695:1700,
1/A/2031:2033
No text annotation
Not in a motif group
homologous
IL_4WF9_062
IL_12566.2
IL_7ASN_0491/A/1707:1709,
1/A/2022:2024
Isolated tWW turn
Not in a motif group
homologous
IL_7A0S_060
IL_54997.7
IL_7ASN_0501/A/1710:1713,
1/A/2020:2021
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_064
IL_50694.2
IL_7ASN_0511/A/1730:1735,
1/A/1740:1746
No text annotation
Not in a motif group
IL_7ASN_0521/A/1756:1759,
1/A/1770:1773
No text annotation
Not in a motif group
IL_7ASN_0531/A/1825:1831,
1/A/1840:1848
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_7ASN_0541/A/1961:1972,
1/A/1988:1991
No text annotation
Not in a motif group
IL_7ASN_0551/A/1972:1976,
1/A/1985:1988
No text annotation
Not in a motif group
IL_7ASN_0561/A/2077:2079,
1/A/2644:2645
Major groove platform
Not in a motif group
homologous
IL_4WF9_078
IL_27635.1
IL_7ASN_0571/A/2081:2083,
1/A/2639:2642
No text annotation
Not in a motif group
homologous
IL_4WF9_079
IL_54678.5
IL_7ASN_0581/A/2094:2096,
1/A/2469:2470
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.13
IL_7ASN_0591/A/2097:2098,
1/A/2465:2468
Minor groove platform
Not in a motif group
homologous
IL_4WF9_081
IL_42622.2
IL_7ASN_0601/A/2108:2110,
1/A/2263:2266
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7A0S_077
IL_38958.7
IL_7ASN_0611/A/2123:2126,
1/A/2217:2220
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_3WBM_002
IL_30621.2
IL_7ASN_0621/A/2131:2150,
1/A/2202:2212
No text annotation
Not in a motif group
IL_7ASN_0631/A/2151:2154,
1/A/2188:2201
No text annotation
Not in a motif group
IL_7ASN_0641/A/2229:2231,
1/A/2247:2248
Single bulged G
Not in a motif group
geometric
IL_3NDB_004
IL_00225.2
IL_7ASN_0651/A/2377:2380,
1/A/2391:2394
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_7ASN_0661/A/2428:2430,
1/A/2441:2442
Single bulged U
Not in a motif group
homologous
IL_4WF9_088
IL_83039.13
IL_7ASN_0671/A/2480:2481,
1/A/2525:2527
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_7ASN_0681/A/2481:2482,
1/A/2523:2525
Major groove platform
Not in a motif group
geometric
IL_4V9F_082
IL_27635.1
IL_7ASN_0691/A/2484:2488,
1/A/2517:2521
No text annotation
Not in a motif group
IL_7ASN_0701/A/2488:2491,
1/A/2514:2517
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1MFQ_004
IL_30621.2
IL_7ASN_0711/A/2494:2497,
1/A/2507:2511
No text annotation
Not in a motif group
IL_7ASN_0721/A/2534:2535,
1/A/2607:2609
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_7ASN_0731/A/2537:2539,
1/A/2601:2605
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4WF9_095
IL_90933.2
IL_7ASN_0741/A/2539:2540,
1/A/2598:2601
No text annotation
Not in a motif group
homologous
IL_4WF9_096
IL_71530.2
IL_7ASN_0751/A/2549:2550,
1/A/2567:2570
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7A0S_091
IL_95601.3
IL_7ASN_0761/A/2618:2619,
1/A/2628:2630
Major groove platform
Not in a motif group
geometric
IL_3SUX_002
IL_27635.1
IL_7ASN_0771/A/2662:2670,
1/A/2799:2810
No text annotation
Not in a motif group
IL_7ASN_0781/A/2674:2678,
1/A/2697:2701
No text annotation
Not in a motif group
IL_7ASN_0791/A/2678:2685,
1/A/2690:2697
No text annotation
Not in a motif group
IL_7ASN_0801/A/2708:2713,
1/A/2751:2754
C-loop with extra cWW pair
Not in a motif group
geometric
IL_4V88_408
IL_93630.2
IL_7ASN_0811/A/2713:2719,
1/A/2745:2751
No text annotation
Not in a motif group
IL_7ASN_0821/A/2719:2723,
1/A/2741:2745
No text annotation
Not in a motif group
geometric
IL_5TBW_121
IL_05145.2
IL_7ASN_0831/A/2723:2726,
1/A/2736:2741
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4K27_002
IL_30621.2
IL_7ASN_0841/A/2763:2769,
1/A/2789:2795
No text annotation
Not in a motif group
IL_7ASN_0851/A/2834:2836,
1/A/2848:2850
No text annotation
Not in a motif group
geometric
IL_1Y27_001
IL_51629.2
IL_7ASN_0861/A/2861:2864,
1/A/2891:2895
No text annotation
Not in a motif group
IL_7ASN_0871/B/15:16,
1/B/63:65
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_112
IL_37497.2
IL_7ASN_0881/B/19:28,
1/B/52:60
No text annotation
Not in a motif group
IL_7ASN_0891/B/28:30,
1/B/48:52
No text annotation
Not in a motif group
geometric
IL_4WF9_114
IL_10810.1
IL_7ASN_0901/B/32:36,
1/B/42:46
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5TBW_376
IL_58103.6
IL_7ASN_0911/B/69:78,
1/B/93:102
No text annotation
Not in a motif group
IL_7ASN_0921/B/78:80,
1/B/91:93
No text annotation
Not in a motif group
geometric
IL_4WF9_018
IL_51629.2

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7ASN_0011/A/30:31,
1/A/520:527,
1/A/554:555
No text annotation
Not in a motif group
J3_7ASN_0021/A/56:67,
1/A/74:76,
1/A/109:113
No text annotation
Not in a motif group
J3_7ASN_0031/A/728:734,
1/A/818:820,
1/A/836:839
No text annotation
Not in a motif group
J3_7ASN_0041/A/743:745,
1/A/777:781,
1/A/805:808
No text annotation
Not in a motif group
J3_7ASN_0051/A/1335:1340,
1/A/1669:1671,
1/A/1683:1686
No text annotation
Not in a motif group
homologous
J3_4WF9_004
NA
J3_7ASN_0061/A/1342:1346,
1/A/1649:1655,
1/A/1664:1667
No text annotation
Not in a motif group
homologous
J3_4WF9_005
NA
J3_7ASN_0071/A/2118:2120,
1/A/2223:2229,
1/A/2248:2255
No text annotation
Not in a motif group
J3_7ASN_0081/A/2322:2326,
1/A/2344:2350,
1/A/2359:2364
No text annotation
Not in a motif group
J3_7ASN_0091/A/2544:2547,
1/A/2572:2574,
1/A/2588:2594
No text annotation
Not in a motif group
homologous
J3_4WF9_009
NA
J3_7ASN_0101/B/9:14,
1/B/66:68,
1/B/103:106
No text annotation
Not in a motif group

Problematic loops

No problematic loops


Coloring options:
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