RNA 3D Hub //

4LFB Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4LFB_0011/A/12:22No text annotation
HL_89881.2
HL_4LFB_0021/A/80:89No text annotation
HL_30784.2
HL_4LFB_0031/A/158:163GNRA
HL_42097.1
HL_4LFB_0041/A/190B:190GNo text annotation
HL_10278.1
HL_4LFB_0051/A/201:216No text annotation
HL_56691.2
HL_4LFB_0061/A/259:267No text annotation
HL_69023.2
HL_4LFB_0071/A/296:301GNRA
HL_42097.1
HL_4LFB_0081/A/320:333No text annotation
HL_81205.2
HL_4LFB_0091/A/342:347UNCG
HL_03562.2
HL_4LFB_0101/A/379:384GNRA
HL_42097.1
HL_4LFB_0111/A/419:424UNCG
HL_03562.2
HL_4LFB_0121/A/458:474No text annotation
HL_43656.2
HL_4LFB_0131/A/521:528No text annotation
Not in a motif group
HL_4LFB_0141/A/617:623No text annotation
HL_26881.1
HL_4LFB_0151/A/689:698No text annotation
HL_12326.1
HL_4LFB_0161/A/726:731Other HL
HL_87030.2
HL_4LFB_0171/A/786:796No text annotation
HL_12326.1
HL_4LFB_0181/A/838:848No text annotation
HL_38927.2
HL_4LFB_0191/A/862:867GNRA
HL_42097.1
HL_4LFB_0201/A/897:902GNRA
HL_42097.1
HL_4LFB_0211/A/963:972No text annotation
Not in a motif group
HL_4LFB_0221/A/1012:1017GNRA
HL_42097.1
HL_4LFB_0241/A/1076:1081GNRA
HL_42097.1
HL_4LFB_0251/A/1089:1096No text annotation
HL_71554.2
HL_4LFB_0261/A/1134:1140No text annotation
HL_03562.2
HL_4LFB_0271/A/1165:1171GNRA
HL_42097.1
HL_4LFB_0281/A/1265:1270Other HL
HL_42097.1
HL_4LFB_0291/A/1314:1323No text annotation
HL_89380.2
HL_4LFB_0301/A/1356:1366No text annotation
HL_96366.1
HL_4LFB_0311/A/1449:1454UNCG
HL_03562.2
HL_4LFB_0321/A/1515:1520No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_4LFB_023No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4LFB_0011/A/30:32,
1/A/552:553		Single bulged G
IL_00225.2
IL_4LFB_0021/A/44:45,
1/A/396:398		Single bulged A
IL_37497.2
IL_4LFB_0031/A/47:52,
1/A/359:361		No text annotation
IL_11178.1
IL_4LFB_0041/A/54:56,
1/A/356:357		Minor groove platform
IL_93353.1
IL_4LFB_0051/A/63:66,
1/A/103:104		Multiple bulged bases
IL_76389.1
IL_4LFB_0061/A/67:69,
1/A/99:102		No text annotation
IL_95997.1
IL_4LFB_0071/A/129:131,
1/A/231:232		Multiple bulged bases
IL_16396.2
IL_4LFB_0081/A/132:136,
1/A/227:230		No text annotation
IL_58764.3
IL_4LFB_0091/A/148:153,
1/A/168:174		tWH-tWH-tHW-tHW
IL_39753.1
IL_4LFB_0101/A/186:188,
1/A/190K:191		No text annotation
IL_95997.1
IL_4LFB_0111/A/242:247,
1/A/277:284		Kink-turn with non-sequential stacking
IL_45067.2
IL_4LFB_0121/A/249:252,
1/A/274:275		No text annotation
IL_48100.2
IL_4LFB_0131/A/292:293,
1/A/304:308		C-loop
IL_37712.2
IL_4LFB_0141/A/367:369,
1/A/392:393		Single bulged U
IL_83039.13
IL_4LFB_0151/A/371:375,
1/A/389:390		C-loop
IL_75255.1
IL_4LFB_0161/A/375:376,
1/A/387:389		Single bulged G
IL_00225.2
IL_4LFB_0171/A/409:416,
1/A/427:433		No text annotation
IL_28026.1
IL_4LFB_0181/A/446:450,
1/A/483:488		6x5 Sarcin-Ricin; G-bulge
IL_88269.3
IL_4LFB_0191/A/450:455,
1/A/477:483		No text annotation
IL_11882.1
IL_4LFB_0201/A/504:511,
1/A/540:541		SSU/LSU pseudoknot
IL_15861.7
IL_4LFB_0211/A/515:521,
1/A/528:536		No text annotation
Not in a motif group
IL_4LFB_0221/A/569:575,
1/A/880:881		No text annotation
IL_69996.1
IL_4LFB_0231/A/580:584,
1/A/757:761		tSH-tHW-tHS
IL_17136.1
IL_4LFB_0241/A/594:596,
1/A/644:645		Major groove platform
IL_27635.1
IL_4LFB_0251/A/597:598,
1/A/640:643		Major groove minor groove platform; mini C-loop
IL_09061.6
IL_4LFB_0261/A/605:612,
1/A/628:633		No text annotation
IL_78349.1
IL_4LFB_0271/A/654:655,
1/A/751:754		Major groove platform; stack outside cWW
IL_50694.2
IL_4LFB_0281/A/657:658,
1/A/747:749		Major groove platform
IL_27635.1
IL_4LFB_0291/A/662:666,
1/A/740:743		Tandem non-canonical cWW pairs
IL_71110.1
IL_4LFB_0301/A/673:678,
1/A/712:717		No text annotation
IL_04668.1
IL_4LFB_0311/A/683:688,
1/A/699:707		Kink-turn
IL_37722.1
IL_4LFB_0321/A/774:778,
1/A/804:805		Left turn
IL_29346.1
IL_4LFB_0331/A/779:783,
1/A/799:803		tSH-tHW-tHS
IL_17136.1
IL_4LFB_0341/A/887:894,
1/A/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
IL_24606.2
IL_4LFB_0351/A/922:923,
1/A/1393:1395		Single bulged A
IL_37497.2
IL_4LFB_0361/A/925:927,
1/A/1390:1391		Single bulged G
IL_00225.2
IL_4LFB_0371/A/933:935,
1/A/1380:1384		Minor groove platform
IL_47078.1
IL_4LFB_0381/A/953:954,
1/A/1226:1228		Minor groove platform
IL_42622.2
IL_4LFB_0391/A/993:997,
1/A/1044:1045		Minor groove platform
IL_47078.1
IL_4LFB_0411/A/1002:1003A,
1/A/1038:1039		Single stack bend
IL_76488.2
IL_4LFB_0421/A/1048:1050,
1/A/1208:1209		Single bulged U
IL_83039.13
IL_4LFB_0431/A/1050:1052,
1/A/1206:1208		No text annotation
Not in a motif group
IL_4LFB_0441/A/1052:1056,
1/A/1204:1206		Isolated cWS basepair
IL_76319.2
IL_4LFB_0451/A/1057:1058,
1/A/1199:1203		Minor groove platform
IL_93353.1
IL_4LFB_0461/A/1060:1061,
1/A/1195:1197		Single bulged U
IL_83039.13
IL_4LFB_0471/A/1061:1063,
1/A/1193:1195		No text annotation
IL_95997.1
IL_4LFB_0481/A/1124:1128,
1/A/1143:1149		No text annotation
IL_85222.1
IL_4LFB_0491/A/1128:1132,
1/A/1142:1143		Minor groove platform
IL_15052.1
IL_4LFB_0501/A/1158:1161,
1/A/1175:1181		No text annotation
IL_42032.1
IL_4LFB_0511/A/1247:1253,
1/A/1284:1290		No text annotation
IL_09129.1
IL_4LFB_0521/A/1255:1258,
1/A/1277:1282		No text annotation
IL_84205.1
IL_4LFB_0531/A/1259:1260,
1/A/1274:1276		Not an internal loop
IL_93353.1
IL_4LFB_0541/A/1260:1262,
1/A/1273:1274		Minor groove platform
IL_93353.1
IL_4LFB_0551/A/1303:1308,
1/A/1329:1334		No text annotation
IL_19954.2
IL_4LFB_0561/A/1399:1401,
1/A/1501:1504		No text annotation
Not in a motif group
IL_4LFB_0571/A/1401:1405,
1/A/1496:1501		No text annotation
Not in a motif group
IL_4LFB_0581/A/1405:1409,
1/A/1491:1496		No text annotation
Not in a motif group
IL_4LFB_0591/A/1412:1414,
1/A/1486:1488		No text annotation
IL_95997.1
IL_4LFB_0601/A/1416:1419,
1/A/1481:1484		Double sheared
IL_09705.9
IL_4LFB_0611/A/1424:1426,
1/A/1474:1476		UG cWW
IL_95997.1
IL_4LFB_0621/A/1431:1435,
1/A/1466:1469		UAA/GAN variation
IL_07235.1
IL_4LFB_0631/A/1435:1437,
1/A/1464:1466		No text annotation
IL_95997.1
IL_4LFB_0641/A/1440:1447,
1/A/1459:1461		No text annotation
IL_92788.2

Problematic loops

#loop idProblemSequence
IL_4LFB_040No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4LFB_0011/A/826:829,
1/A/857:861,
1/A/868:874		No text annotation
Not in a motif group
J3_4LFB_0021/A/936:939,
1/A/1344:1350,
1/A/1372:1379		No text annotation
Not in a motif group
J3_4LFB_0031/A/943:946,
1/A/1235:1237,
1/A/1337:1340		No text annotation
Not in a motif group
J3_4LFB_0041/A/955:962,
1/A/973:984,
1/A/1221:1225		No text annotation
Not in a motif group
J3_4LFB_0051/A/990:993,
1/A/1045:1047,
1/A/1210:1215		No text annotation
Not in a motif group
J3_4LFB_0061/A/1003A:1006,
1/A/1023:1028,
1/A/1033:1038		No text annotation
Not in a motif group
J3_4LFB_0071/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193		No text annotation
Not in a motif group
J3_4LFB_0081/A/1116:1118,
1/A/1155:1158,
1/A/1181:1184		No text annotation
Not in a motif group
J3_4LFB_0091/A/1237:1241,
1/A/1296:1303,
1/A/1334:1337		No text annotation
Not in a motif group

Problematic loops

No problematic loops


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