6KE6 | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_6KE6_005 ➜	1/5A/120:125	NA	NA
2	HL_6KE6_006 ➜	1/5A/196:201	NA	NA
3	HL_6KE6_009 ➜	1/5A/360:365	NA	NA
4	HL_6KE6_011 ➜	1/5A/514:521	NA	NA
5	HL_6KE6_012 ➜	1/SA/70:81	NA	NA
6	HL_6KE6_013 ➜	1/SA/154:160	NA	NA
7	HL_6KE6_014 ➜	1/SA/186:199	NA	NA
8	HL_6KE6_015 ➜	1/SA/228:237	NA	NA
9	HL_6KE6_016 ➜	1/SA/276:279	NA	NA
10	HL_6KE6_017 ➜	1/SA/330:338	NA	NA
11	HL_6KE6_018 ➜	1/SA/364:381	NA	NA
12	HL_6KE6_019 ➜	1/SA/393:404	NA	NA
13	HL_6KE6_020 ➜	1/SA/450:456	NA	NA
14	HL_6KE6_021 ➜	1/SA/491:496	NA	NA
15	HL_6KE6_022 ➜	1/SA/520:532	NA	NA
16	HL_6KE6_023 ➜	1/SA/561:566	NA	NA
17	HL_6KE6_025 ➜	1/SA/900:909	NA	NA
18	HL_6KE6_026 ➜	1/SA/937:942	NA	NA
19	HL_6KE6_027 ➜	1/SA/1055:1064	NA	NA
20	HL_6KE6_028 ➜	1/SA/1129:1139	NA	NA
21	HL_6KE6_031 ➜	1/SA/1501:1506	NA	NA
22	HL_6KE6_032 ➜	1/SA/1594:1602	NA	NA
23	HL_6KE6_033 ➜	1/SA/1629:1636	NA	NA
24	HL_6KE6_034 ➜	1/SA/1699:1703	NA	NA
25	HL_6KE6_035 ➜	1/SA/1778:1783	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6KE6_001 ➜	missing nts	NA
2	HL_6KE6_002 ➜	missing nts	NA
3	HL_6KE6_003 ➜	missing nts	NA
4	HL_6KE6_004 ➜	missing nts	NA
5	HL_6KE6_007 ➜	missing nts	NA
6	HL_6KE6_008 ➜	missing nts	NA
7	HL_6KE6_010 ➜	missing nts	NA
8	HL_6KE6_024 ➜	missing nts	NA
9	HL_6KE6_029 ➜	missing nts	NA
10	HL_6KE6_030 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_6KE6_001 ➜	1/3A/6:7,1/SA/1117:1119	NA	NA
2	IL_6KE6_002 ➜	1/3A/48:50,1/5A/466:470	NA	NA
3	IL_6KE6_003 ➜	1/3A/78:85,1/3A/325:329	NA	NA
4	IL_6KE6_004 ➜	1/3A/97:98,1/3A/317:319	NA	NA
5	IL_6KE6_007 ➜	1/5A/17:18,1/5A/62:64	NA	NA
6	IL_6KE6_008 ➜	1/5A/93:95,1/5A/149:157	NA	NA
7	IL_6KE6_009 ➜	1/5A/97:99,1/5A/145:147	NA	NA
8	IL_6KE6_010 ➜	1/5A/100:104,1/5A/140:144	NA	NA
9	IL_6KE6_011 ➜	1/5A/107:110,1/5A/136:137	NA	NA
10	IL_6KE6_012 ➜	1/5A/116:117,1/5A/128:130	NA	NA
11	IL_6KE6_013 ➜	1/5A/167:173,1/5A/223:228	NA	NA
12	IL_6KE6_014 ➜	1/5A/175:179,1/5A/218:221	NA	NA
13	IL_6KE6_015 ➜	1/5A/187:190,1/5A/207:210	NA	NA
14	IL_6KE6_016 ➜	1/5A/238:240,1/5A/273:274	NA	NA
15	IL_6KE6_017 ➜	1/5A/245:246,1/5A/266:268	NA	NA
16	IL_6KE6_018 ➜	1/5A/250:251,1/5A/257:262	NA	NA
17	IL_6KE6_019 ➜	1/5A/337:340,1/5A/386:387	NA	NA
18	IL_6KE6_020 ➜	1/5A/340:341,1/5A/384:386	NA	NA
19	IL_6KE6_021 ➜	1/5A/342:343,1/5A/381:383	NA	NA
20	IL_6KE6_022 ➜	1/5A/346:349,1/5A/375:378	NA	NA
21	IL_6KE6_023 ➜	1/5A/351:355,1/5A/371:373	NA	NA
22	IL_6KE6_024 ➜	1/5A/355:356,1/5A/369:371	NA	NA
23	IL_6KE6_025 ➜	1/5A/402:407,1/5A/449:455	NA	NA
24	IL_6KE6_026 ➜	1/5A/413:414,1/5A/441:443	NA	NA
25	IL_6KE6_027 ➜	1/5A/414:415,1/5A/439:441	NA	NA
26	IL_6KE6_029 ➜	1/5A/497:499,1/5A/539:542	NA	NA
27	IL_6KE6_030 ➜	1/5A/501:503,1/5A/533:537	NA	NA
28	IL_6KE6_031 ➜	1/5A/505:507,1/5A/529:531	NA	NA
29	IL_6KE6_032 ➜	1/5A/510:511,1/5A/524:526	NA	NA
30	IL_6KE6_033 ➜	1/5A/550:552,1/5A/585:587	NA	NA
31	IL_6KE6_034 ➜	1/SA/24:26,1/SA/600:601	NA	NA
32	IL_6KE6_035 ➜	1/SA/35:37,1/SA/471:473	NA	NA
33	IL_6KE6_036 ➜	1/SA/50:53,1/SA/427:429	NA	NA
34	IL_6KE6_037 ➜	1/SA/58:63,1/SA/87:89	NA	NA
35	IL_6KE6_038 ➜	1/SA/64:70,1/SA/81:86	NA	NA
36	IL_6KE6_039 ➜	1/SA/109:112,1/SA/302:305	NA	NA
37	IL_6KE6_040 ➜	1/SA/113:117,1/SA/299:301	NA	NA
38	IL_6KE6_041 ➜	1/SA/117:122,1/SA/295:299	NA	NA
39	IL_6KE6_042 ➜	1/SA/143:149,1/SA/165:172	NA	NA
40	IL_6KE6_043 ➜	1/SA/150:152,1/SA/162:164	NA	NA
41	IL_6KE6_044 ➜	1/SA/204:206,1/SA/259:263	NA	NA
42	IL_6KE6_045 ➜	1/SA/206:208,1/SA/257:259	NA	NA
43	IL_6KE6_046 ➜	1/SA/225:228,1/SA/237:242	NA	NA
44	IL_6KE6_047 ➜	1/SA/265:267,1/SA/288:289	NA	NA
45	IL_6KE6_048 ➜	1/SA/270:274,1/SA/282:285	NA	NA
46	IL_6KE6_049 ➜	1/SA/275:276,1/SA/279:281	NA	NA
47	IL_6KE6_050 ➜	1/SA/311:316,1/SA/348:355	NA	NA
48	IL_6KE6_051 ➜	1/SA/318:323,1/SA/345:346	NA	NA
49	IL_6KE6_052 ➜	1/SA/389:391,1/SA/406:408	NA	NA
50	IL_6KE6_053 ➜	1/SA/443:447,1/SA/460:461	NA	NA
51	IL_6KE6_054 ➜	1/SA/447:448,1/SA/458:460	NA	NA
52	IL_6KE6_055 ➜	1/SA/482:483,1/SA/504:506	NA	NA
53	IL_6KE6_056 ➜	1/SA/514:516,1/SA/536:543	NA	NA
54	IL_6KE6_057 ➜	1/SA/517:520,1/SA/532:535	NA	NA
55	IL_6KE6_058 ➜	1/SA/551:552,1/SA/584:587	NA	NA
56	IL_6KE6_059 ➜	1/SA/552:559,1/SA/568:584	NA	NA
57	IL_6KE6_060 ➜	1/SA/624:626,1/SA/973:975	NA	NA
58	IL_6KE6_061 ➜	1/SA/627:631,1/SA/969:972	NA	NA
59	IL_6KE6_062 ➜	1/SA/631:632,1/SA/967:969	NA	NA
60	IL_6KE6_064 ➜	1/SA/646:649,1/SA/685:688	NA	NA
61	IL_6KE6_065 ➜	1/SA/652:659,1/SA/677:682	NA	NA
62	IL_6KE6_066 ➜	1/SA/865:866,1/SA/962:965	NA	NA
63	IL_6KE6_067 ➜	1/SA/868:870,1/SA/957:960	NA	NA
64	IL_6KE6_068 ➜	1/SA/871:873,1/SA/954:956	NA	NA
65	IL_6KE6_069 ➜	1/SA/874:878,1/SA/950:953	NA	NA
66	IL_6KE6_070 ➜	1/SA/885:888,1/SA/924:927	NA	NA
67	IL_6KE6_071 ➜	1/SA/893:899,1/SA/910:919	NA	NA
68	IL_6KE6_072 ➜	1/SA/1033:1034,1/SA/1083:1085	NA	NA
69	IL_6KE6_073 ➜	1/SA/1035:1039,1/SA/1079:1082	NA	NA
70	IL_6KE6_074 ➜	1/SA/1041:1044,1/SA/1074:1077	NA	NA
71	IL_6KE6_075 ➜	1/SA/1051:1053,1/SA/1066:1067	NA	NA
72	IL_6KE6_076 ➜	1/SA/1157:1160,1/SA/1617:1621	NA	NA
73	IL_6KE6_077 ➜	1/SA/1173:1174,1/SA/1464:1466	NA	NA
74	IL_6KE6_078 ➜	1/SA/1174:1176,1/SA/1463:1464	NA	NA
75	IL_6KE6_079 ➜	1/SA/1213:1216,1/SA/1448:1451	NA	NA
76	IL_6KE6_080 ➜	1/SA/1268:1270,1/SA/1440:1441	NA	NA
77	IL_6KE6_081 ➜	1/SA/1470:1474,1/SA/1533:1574	NA	NA
78	IL_6KE6_082 ➜	1/SA/1495:1498,1/SA/1509:1512	NA	NA
79	IL_6KE6_083 ➜	1/SA/1650:1652,1/SA/1748:1750	NA	NA
80	IL_6KE6_084 ➜	1/SA/1653:1659,1/SA/1742:1747	NA	NA
81	IL_6KE6_085 ➜	1/SA/1664:1667,1/SA/1734:1737	NA	NA
82	IL_6KE6_086 ➜	1/SA/1669:1672,1/SA/1729:1732	NA	NA
83	IL_6KE6_087 ➜	1/SA/1672:1674,1/SA/1727:1729	NA	NA
84	IL_6KE6_088 ➜	1/SA/1688:1690,1/SA/1711:1713	NA	NA
85	IL_6KE6_089 ➜	1/SA/1693:1695,1/SA/1706:1708	NA	NA
86	IL_6KE6_090 ➜	1/SA/1697:1699,1/SA/1703:1704	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_6KE6_005 ➜	missing nts	NA
2	IL_6KE6_006 ➜	missing nts	NA
3	IL_6KE6_028 ➜	missing nts	NA
4	IL_6KE6_063 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_6KE6_002 ➜	1/SA/633:635,1/SA/861:865,1/SA/965:966	NA	NA
2	J3_6KE6_003 ➜	1/SA/881:884,1/SA/928:936,1/SA/943:947	NA	NA
3	J3_6KE6_004 ➜	1/SA/1150:1151,1/SA/1627:1629,1/SA/1636:1640	NA	NA
4	J3_6KE6_005 ➜	1/SA/1168:1171,1/SA/1468:1470,1/SA/1574:1577	NA	NA
5	J3_6KE6_006 ➜	1/SA/1216:1220,1/SA/1263:1268,1/SA/1441:1448	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_6KE6_001 ➜	missing nts	NA

6KE6 Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops