Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6KE6_0051/5A/120:125Other HL
Not in a motif group
geometric
HL_4C7O_001
HL_87030.2
HL_6KE6_0061/5A/196:201GNRA
Not in a motif group
geometric
HL_2OIU_001
HL_42097.2
HL_6KE6_0091/5A/360:365No text annotation
Not in a motif group
geometric
HL_3IGI_004
HL_30784.2
HL_6KE6_0111/5A/514:521No text annotation
Not in a motif group
geometric
HL_7RQB_022
HL_84085.2
HL_6KE6_0121/SA/70:81No text annotation
Not in a motif group
HL_6KE6_0131/SA/154:160Other HL
Not in a motif group
geometric
HL_4QK9_001
HL_42097.2
HL_6KE6_0141/SA/186:199No text annotation
Not in a motif group
HL_6KE6_0151/SA/228:237No text annotation
Not in a motif group
HL_6KE6_0161/SA/276:279No text annotation
Not in a motif group
homologous
HL_4V88_192
HL_53837.1
HL_6KE6_0171/SA/330:338No text annotation
Not in a motif group
homologous
HL_4V88_193
HL_69023.2
HL_6KE6_0181/SA/364:381No text annotation
Not in a motif group
HL_6KE6_0191/SA/393:404No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_6KE6_0201/SA/450:456No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_6KE6_0211/SA/491:496Other HL
Not in a motif group
geometric
HL_2CZJ_007
HL_53845.1
HL_6KE6_0221/SA/520:532No text annotation
Not in a motif group
homologous
HL_4V88_199
HL_06285.2
HL_6KE6_0231/SA/561:566No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_6KE6_0251/SA/900:909No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_6KE6_0261/SA/937:942Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_6KE6_0271/SA/1055:1064No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_91104.1
HL_6KE6_0281/SA/1129:1139No text annotation
Not in a motif group
HL_6KE6_0311/SA/1501:1506GNRA
Not in a motif group
homologous
HL_4V88_218
HL_42097.2
HL_6KE6_0321/SA/1594:1602No text annotation
Not in a motif group
HL_6KE6_0331/SA/1629:1636No text annotation
Not in a motif group
HL_6KE6_0341/SA/1699:1703No text annotation
Not in a motif group
HL_6KE6_0351/SA/1778:1783No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_6KE6_001No text annotation
HL_6KE6_002No text annotation
HL_6KE6_003No text annotation
HL_6KE6_004No text annotation
HL_6KE6_007No text annotation
HL_6KE6_008No text annotation
HL_6KE6_010No text annotation
HL_6KE6_024No text annotation
HL_6KE6_029No text annotation
HL_6KE6_030No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6KE6_0011/3A/6:7,
1/SA/1117:1119
Single bulged G
Not in a motif group
geometric
IL_3IGI_004
IL_00225.3
IL_6KE6_0021/3A/48:50,
1/5A/466:470
No text annotation
Not in a motif group
geometric
IL_4V9F_053
IL_46796.1
IL_6KE6_0031/3A/78:85,
1/3A/325:329
No text annotation
Not in a motif group
IL_6KE6_0041/3A/97:98,
1/3A/317:319
No text annotation
Not in a motif group
IL_6KE6_0071/5A/17:18,
1/5A/62:64
Single bulged G
Not in a motif group
geometric
IL_3NDB_004
IL_00225.3
IL_6KE6_0081/5A/93:95,
1/5A/149:157
No text annotation
Not in a motif group
IL_6KE6_0091/5A/97:99,
1/5A/145:147
Isolated cWH basepair
Not in a motif group
geometric
IL_3R1C_012
IL_51629.2
IL_6KE6_0101/5A/100:104,
1/5A/140:144
No text annotation
Not in a motif group
IL_6KE6_0111/5A/107:110,
1/5A/136:137
Single stack bend
Not in a motif group
geometric
IL_4V83_236
IL_76488.2
IL_6KE6_0121/5A/116:117,
1/5A/128:130
Single bulged U
Not in a motif group
geometric
IL_4V88_469
IL_83039.14
IL_6KE6_0131/5A/167:173,
1/5A/223:228
No text annotation
Not in a motif group
IL_6KE6_0141/5A/175:179,
1/5A/218:221
No text annotation
Not in a motif group
IL_6KE6_0151/5A/187:190,
1/5A/207:210
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6CZR_168
IL_67743.1
IL_6KE6_0161/5A/238:240,
1/5A/273:274
Single bulged U
Not in a motif group
geometric
IL_6JDV_003
IL_83039.14
IL_6KE6_0171/5A/245:246,
1/5A/266:268
Single bulged U
Not in a motif group
geometric
IL_7KVT_002
IL_83039.14
IL_6KE6_0181/5A/250:251,
1/5A/257:262
Multiple bulged bases
Not in a motif group
geometric
IL_1R3E_002
IL_59677.2
IL_6KE6_0191/5A/337:340,
1/5A/386:387
Major groove minor groove platform; mini C-loop
Not in a motif group
geometric
IL_4V9F_068
IL_95601.3
IL_6KE6_0201/5A/340:341,
1/5A/384:386
Single bulged A
Not in a motif group
geometric
IL_1JZV_002
IL_37497.3
IL_6KE6_0211/5A/342:343,
1/5A/381:383
Single bulged U
Not in a motif group
geometric
IL_4FRG_002
IL_83039.14
IL_6KE6_0221/5A/346:349,
1/5A/375:378
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_280D_001
IL_30621.3
IL_6KE6_0231/5A/351:355,
1/5A/371:373
No text annotation
Not in a motif group
IL_6KE6_0241/5A/355:356,
1/5A/369:371
Multiple bulged bases
Not in a motif group
geometric
IL_1R3E_001
IL_16396.2
IL_6KE6_0251/5A/402:407,
1/5A/449:455
No text annotation
Not in a motif group
IL_6KE6_0261/5A/413:414,
1/5A/441:443
Single stack bend
Not in a motif group
geometric
IL_4C7O_002
IL_76488.2
IL_6KE6_0271/5A/414:415,
1/5A/439:441
Single bulged U
Not in a motif group
geometric
IL_3WBM_001
IL_83039.14
IL_6KE6_0291/5A/497:499,
1/5A/539:542
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_3TD0_005
IL_82068.2
IL_6KE6_0301/5A/501:503,
1/5A/533:537
No text annotation
Not in a motif group
geometric
IL_6DME_003
IL_63450.2
IL_6KE6_0311/5A/505:507,
1/5A/529:531
No text annotation
Not in a motif group
geometric
IL_3D0U_006
IL_95997.1
IL_6KE6_0321/5A/510:511,
1/5A/524:526
Single bulged U
Not in a motif group
geometric
IL_3WBM_001
IL_83039.14
IL_6KE6_0331/5A/550:552,
1/5A/585:587
No text annotation
Not in a motif group
geometric
IL_4WF9_020
IL_95997.1
IL_6KE6_0341/SA/24:26,
1/SA/600:601
Single bulged C
Not in a motif group
geometric
IL_7KGA_001
IL_61258.12
IL_6KE6_0351/SA/35:37,
1/SA/471:473
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_51629.2
IL_6KE6_0361/SA/50:53,
1/SA/427:429
No text annotation
Not in a motif group
geometric
IL_4N0T_004
IL_46796.1
IL_6KE6_0371/SA/58:63,
1/SA/87:89
No text annotation
Not in a motif group
IL_6KE6_0381/SA/64:70,
1/SA/81:86
No text annotation
Not in a motif group
IL_6KE6_0391/SA/109:112,
1/SA/302:305
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_391
IL_30621.3
IL_6KE6_0401/SA/113:117,
1/SA/299:301
No text annotation
Not in a motif group
geometric
IL_1XJR_003
IL_10023.1
IL_6KE6_0411/SA/117:122,
1/SA/295:299
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_64181.2
IL_6KE6_0421/SA/143:149,
1/SA/165:172
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4V88_394
IL_80604.2
IL_6KE6_0431/SA/150:152,
1/SA/162:164
No text annotation
Not in a motif group
homologous
IL_4V88_395
IL_53251.2
IL_6KE6_0441/SA/204:206,
1/SA/259:263
Major groove platform with extra cWW
Not in a motif group
homologous
IL_4V88_397
IL_05564.2
IL_6KE6_0451/SA/206:208,
1/SA/257:259
No text annotation
Not in a motif group
homologous
IL_4V88_398
IL_95997.1
IL_6KE6_0461/SA/225:228,
1/SA/237:242
No text annotation
Not in a motif group
IL_6KE6_0471/SA/265:267,
1/SA/288:289
Single bulged A
Not in a motif group
homologous
IL_4V88_399
IL_37497.3
IL_6KE6_0481/SA/270:274,
1/SA/282:285
No text annotation
Not in a motif group
IL_6KE6_0491/SA/275:276,
1/SA/279:281
No text annotation
Not in a motif group
IL_6KE6_0501/SA/311:316,
1/SA/348:355
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_45067.2
IL_6KE6_0511/SA/318:323,
1/SA/345:346
No text annotation
Not in a motif group
geometric
IL_5Y58_001
IL_48100.2
IL_6KE6_0521/SA/389:391,
1/SA/406:408
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_51629.2
IL_6KE6_0531/SA/443:447,
1/SA/460:461
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_6KE6_0541/SA/447:448,
1/SA/458:460
Single bulged G
Not in a motif group
geometric
IL_4LFB_016
IL_00225.3
IL_6KE6_0551/SA/482:483,
1/SA/504:506
Single bulged A
Not in a motif group
homologous
IL_4V88_409
IL_37497.3
IL_6KE6_0561/SA/514:516,
1/SA/536:543
No text annotation
Not in a motif group
homologous
IL_8C3A_420
IL_55023.1
IL_6KE6_0571/SA/517:520,
1/SA/532:535
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6JDV_001
IL_30621.3
IL_6KE6_0581/SA/551:552,
1/SA/584:587
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_6KE6_0591/SA/552:559,
1/SA/568:584
No text annotation
Not in a motif group
IL_6KE6_0601/SA/624:626,
1/SA/973:975
No text annotation
Not in a motif group
homologous
IL_4V88_417
IL_95997.1
IL_6KE6_0611/SA/627:631,
1/SA/969:972
No text annotation
Not in a motif group
IL_6KE6_0621/SA/631:632,
1/SA/967:969
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_76488.2
IL_6KE6_0641/SA/646:649,
1/SA/685:688
No text annotation
Not in a motif group
IL_6KE6_0651/SA/652:659,
1/SA/677:682
No text annotation
Not in a motif group
IL_6KE6_0661/SA/865:866,
1/SA/962:965
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4V88_428
IL_50694.2
IL_6KE6_0671/SA/868:870,
1/SA/957:960
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_3TD0_005
IL_82068.2
IL_6KE6_0681/SA/871:873,
1/SA/954:956
No text annotation
Not in a motif group
geometric
IL_5TBW_068
IL_95997.1
IL_6KE6_0691/SA/874:878,
1/SA/950:953
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_431
IL_30621.3
IL_6KE6_0701/SA/885:888,
1/SA/924:927
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_432
IL_30621.3
IL_6KE6_0711/SA/893:899,
1/SA/910:919
No text annotation
Not in a motif group
homologous
IL_8C3A_440
IL_22252.1
IL_6KE6_0721/SA/1033:1034,
1/SA/1083:1085
Single bulged A
Not in a motif group
geometric
IL_5CNR_002
IL_37497.3
IL_6KE6_0731/SA/1035:1039,
1/SA/1079:1082
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_041
IL_30621.3
IL_6KE6_0741/SA/1041:1044,
1/SA/1074:1077
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_438
IL_30621.3
IL_6KE6_0751/SA/1051:1053,
1/SA/1066:1067
Single stack bend
Not in a motif group
geometric
IL_4C7O_002
IL_76488.2
IL_6KE6_0761/SA/1157:1160,
1/SA/1617:1621
C-loop
Not in a motif group
homologous
IL_4V88_443
IL_63596.6
IL_6KE6_0771/SA/1173:1174,
1/SA/1464:1466
Not an internal loop
Not in a motif group
geometric
IL_4UYK_002
IL_76488.2
IL_6KE6_0781/SA/1174:1176,
1/SA/1463:1464
Minor groove platform
Not in a motif group
geometric
IL_6DLR_003
IL_42622.2
IL_6KE6_0791/SA/1213:1216,
1/SA/1448:1451
No text annotation
Not in a motif group
IL_6KE6_0801/SA/1268:1270,
1/SA/1440:1441
No text annotation
Not in a motif group
IL_6KE6_0811/SA/1470:1474,
1/SA/1533:1574
No text annotation
Not in a motif group
IL_6KE6_0821/SA/1495:1498,
1/SA/1509:1512
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_461
IL_30621.3
IL_6KE6_0831/SA/1650:1652,
1/SA/1748:1750
AA cWW
Not in a motif group
homologous
IL_4V88_467
IL_95997.1
IL_6KE6_0841/SA/1653:1659,
1/SA/1742:1747
No text annotation
Not in a motif group
IL_6KE6_0851/SA/1664:1667,
1/SA/1734:1737
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6JDV_001
IL_30621.3
IL_6KE6_0861/SA/1669:1672,
1/SA/1729:1732
Double sheared
Not in a motif group
geometric
IL_5BTP_004
IL_09705.9
IL_6KE6_0871/SA/1672:1674,
1/SA/1727:1729
No text annotation
Not in a motif group
homologous
IL_4V88_472
IL_95997.1
IL_6KE6_0881/SA/1688:1690,
1/SA/1711:1713
No text annotation
Not in a motif group
IL_6KE6_0891/SA/1693:1695,
1/SA/1706:1708
Isolated near basepair
Not in a motif group
geometric
IL_3NJ7_003
IL_52767.2
IL_6KE6_0901/SA/1697:1699,
1/SA/1703:1704
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_76488.2

Problematic loops

#loop idProblemSequence
IL_6KE6_005No text annotation
IL_6KE6_006No text annotation
IL_6KE6_028Single bulged A
IL_6KE6_063No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6KE6_0021/SA/633:635,
1/SA/861:865,
1/SA/965:966
No text annotation
Not in a motif group
J3_6KE6_0031/SA/881:884,
1/SA/928:936,
1/SA/943:947
No text annotation
Not in a motif group
homologous
J3_4V88_033
NA
J3_6KE6_0041/SA/1150:1151,
1/SA/1627:1629,
1/SA/1636:1640
No text annotation
Not in a motif group
J3_6KE6_0051/SA/1168:1171,
1/SA/1468:1470,
1/SA/1574:1577
No text annotation
Not in a motif group
homologous
J3_4V88_036
NA
J3_6KE6_0061/SA/1216:1220,
1/SA/1263:1268,
1/SA/1441:1448
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
J3_6KE6_001No text annotation

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