6KE6 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6KE6_005 | 1/5A/120:125 | Other HL Not in a motif group | geometric HL_4C7O_001 HL_87030.2 | |
| HL_6KE6_006 | 1/5A/196:201 | GNRA Not in a motif group | geometric HL_2OIU_001 HL_42097.1 | |
| HL_6KE6_009 | 1/5A/360:365 | No text annotation Not in a motif group | geometric HL_3IGI_004 HL_30784.2 | |
| HL_6KE6_011 | 1/5A/514:521 | No text annotation Not in a motif group | geometric HL_7RQB_022 HL_84085.2 | |
| HL_6KE6_012 | 1/SA/70:81 | No text annotation Not in a motif group | ||
| HL_6KE6_013 | 1/SA/154:160 | Other HL Not in a motif group | geometric HL_4QK9_001 HL_42097.1 | |
| HL_6KE6_014 | 1/SA/186:199 | No text annotation Not in a motif group | ||
| HL_6KE6_015 | 1/SA/228:237 | No text annotation Not in a motif group | ||
| HL_6KE6_016 | 1/SA/276:279 | No text annotation Not in a motif group | homologous HL_4V88_192 HL_53837.1 | |
| HL_6KE6_017 | 1/SA/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6KE6_018 | 1/SA/364:381 | No text annotation Not in a motif group | ||
| HL_6KE6_019 | 1/SA/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6KE6_020 | 1/SA/450:456 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_6KE6_021 | 1/SA/491:496 | Other HL Not in a motif group | geometric HL_2CZJ_007 HL_53845.1 | |
| HL_6KE6_022 | 1/SA/520:532 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_6KE6_023 | 1/SA/561:566 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6KE6_025 | 1/SA/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6KE6_026 | 1/SA/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6KE6_027 | 1/SA/1055:1064 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_6KE6_028 | 1/SA/1129:1139 | No text annotation Not in a motif group | ||
| HL_6KE6_031 | 1/SA/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6KE6_032 | 1/SA/1594:1602 | No text annotation Not in a motif group | ||
| HL_6KE6_033 | 1/SA/1629:1636 | No text annotation Not in a motif group | ||
| HL_6KE6_034 | 1/SA/1699:1703 | No text annotation Not in a motif group | ||
| HL_6KE6_035 | 1/SA/1778:1783 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6KE6_001 | No text annotation | ||
| HL_6KE6_002 | No text annotation | ||
| HL_6KE6_003 | No text annotation | ||
| HL_6KE6_004 | No text annotation | ||
| HL_6KE6_007 | No text annotation | ||
| HL_6KE6_008 | No text annotation | ||
| HL_6KE6_010 | No text annotation | ||
| HL_6KE6_024 | No text annotation | ||
| HL_6KE6_029 | No text annotation | ||
| HL_6KE6_030 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6KE6_001 | 1/3A/6:7, 1/SA/1117:1119 | Single bulged G Not in a motif group | geometric IL_3IGI_004 IL_00225.2 | |
| IL_6KE6_002 | 1/3A/48:50, 1/5A/466:470 | No text annotation Not in a motif group | geometric IL_4V9F_053 IL_46796.1 | |
| IL_6KE6_003 | 1/3A/78:85, 1/3A/325:329 | No text annotation Not in a motif group | ||
| IL_6KE6_004 | 1/3A/97:98, 1/3A/317:319 | No text annotation Not in a motif group | ||
| IL_6KE6_007 | 1/5A/17:18, 1/5A/62:64 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.2 | |
| IL_6KE6_008 | 1/5A/93:95, 1/5A/149:157 | No text annotation Not in a motif group | ||
| IL_6KE6_009 | 1/5A/97:99, 1/5A/145:147 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_51629.2 | |
| IL_6KE6_010 | 1/5A/100:104, 1/5A/140:144 | No text annotation Not in a motif group | ||
| IL_6KE6_011 | 1/5A/107:110, 1/5A/136:137 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_6KE6_012 | 1/5A/116:117, 1/5A/128:130 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.13 | |
| IL_6KE6_013 | 1/5A/167:173, 1/5A/223:228 | No text annotation Not in a motif group | ||
| IL_6KE6_014 | 1/5A/175:179, 1/5A/218:221 | No text annotation Not in a motif group | ||
| IL_6KE6_015 | 1/5A/187:190, 1/5A/207:210 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_6KE6_016 | 1/5A/238:240, 1/5A/273:274 | Single bulged U Not in a motif group | geometric IL_6JDV_003 IL_83039.13 | |
| IL_6KE6_017 | 1/5A/245:246, 1/5A/266:268 | Single bulged U Not in a motif group | geometric IL_7KVT_002 IL_83039.13 | |
| IL_6KE6_018 | 1/5A/250:251, 1/5A/257:262 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_002 IL_59677.2 | |
| IL_6KE6_019 | 1/5A/337:340, 1/5A/386:387 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4V9F_068 IL_95601.3 | |
| IL_6KE6_020 | 1/5A/340:341, 1/5A/384:386 | Single bulged A Not in a motif group | geometric IL_1JZV_002 IL_37497.2 | |
| IL_6KE6_021 | 1/5A/342:343, 1/5A/381:383 | Single bulged U Not in a motif group | geometric IL_4FRG_002 IL_83039.13 | |
| IL_6KE6_022 | 1/5A/346:349, 1/5A/375:378 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_280D_001 IL_30621.2 | |
| IL_6KE6_023 | 1/5A/351:355, 1/5A/371:373 | No text annotation Not in a motif group | ||
| IL_6KE6_024 | 1/5A/355:356, 1/5A/369:371 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_001 IL_16396.2 | |
| IL_6KE6_025 | 1/5A/402:407, 1/5A/449:455 | No text annotation Not in a motif group | ||
| IL_6KE6_026 | 1/5A/413:414, 1/5A/441:443 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_6KE6_027 | 1/5A/414:415, 1/5A/439:441 | Single bulged U Not in a motif group | geometric IL_3WBM_001 IL_83039.13 | |
| IL_6KE6_029 | 1/5A/497:499, 1/5A/539:542 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_6KE6_030 | 1/5A/501:503, 1/5A/533:537 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
| IL_6KE6_031 | 1/5A/505:507, 1/5A/529:531 | No text annotation Not in a motif group | geometric IL_3D0U_006 IL_95997.1 | |
| IL_6KE6_032 | 1/5A/510:511, 1/5A/524:526 | Single bulged U Not in a motif group | geometric IL_3WBM_001 IL_83039.13 | |
| IL_6KE6_033 | 1/5A/550:552, 1/5A/585:587 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_95997.1 | |
| IL_6KE6_034 | 1/SA/24:26, 1/SA/600:601 | Single bulged C Not in a motif group | geometric IL_7KGA_001 IL_61258.12 | |
| IL_6KE6_035 | 1/SA/35:37, 1/SA/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6KE6_036 | 1/SA/50:53, 1/SA/427:429 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_6KE6_037 | 1/SA/58:63, 1/SA/87:89 | No text annotation Not in a motif group | ||
| IL_6KE6_038 | 1/SA/64:70, 1/SA/81:86 | No text annotation Not in a motif group | ||
| IL_6KE6_039 | 1/SA/109:112, 1/SA/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6KE6_040 | 1/SA/113:117, 1/SA/299:301 | No text annotation Not in a motif group | geometric IL_1XJR_003 IL_10023.1 | |
| IL_6KE6_041 | 1/SA/117:122, 1/SA/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6KE6_042 | 1/SA/143:149, 1/SA/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6KE6_043 | 1/SA/150:152, 1/SA/162:164 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_6KE6_044 | 1/SA/204:206, 1/SA/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_6KE6_045 | 1/SA/206:208, 1/SA/257:259 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_95997.1 | |
| IL_6KE6_046 | 1/SA/225:228, 1/SA/237:242 | No text annotation Not in a motif group | ||
| IL_6KE6_047 | 1/SA/265:267, 1/SA/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6KE6_048 | 1/SA/270:274, 1/SA/282:285 | No text annotation Not in a motif group | ||
| IL_6KE6_049 | 1/SA/275:276, 1/SA/279:281 | No text annotation Not in a motif group | ||
| IL_6KE6_050 | 1/SA/311:316, 1/SA/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6KE6_051 | 1/SA/318:323, 1/SA/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6KE6_052 | 1/SA/389:391, 1/SA/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6KE6_053 | 1/SA/443:447, 1/SA/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6KE6_054 | 1/SA/447:448, 1/SA/458:460 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.2 | |
| IL_6KE6_055 | 1/SA/482:483, 1/SA/504:506 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_6KE6_056 | 1/SA/514:516, 1/SA/536:543 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_6KE6_057 | 1/SA/517:520, 1/SA/532:535 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_001 IL_30621.2 | |
| IL_6KE6_058 | 1/SA/551:552, 1/SA/584:587 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_6KE6_059 | 1/SA/552:559, 1/SA/568:584 | No text annotation Not in a motif group | ||
| IL_6KE6_060 | 1/SA/624:626, 1/SA/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6KE6_061 | 1/SA/627:631, 1/SA/969:972 | No text annotation Not in a motif group | ||
| IL_6KE6_062 | 1/SA/631:632, 1/SA/967:969 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6KE6_064 | 1/SA/646:649, 1/SA/685:688 | No text annotation Not in a motif group | ||
| IL_6KE6_065 | 1/SA/652:659, 1/SA/677:682 | No text annotation Not in a motif group | ||
| IL_6KE6_066 | 1/SA/865:866, 1/SA/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_6KE6_067 | 1/SA/868:870, 1/SA/957:960 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_6KE6_068 | 1/SA/871:873, 1/SA/954:956 | No text annotation Not in a motif group | geometric IL_5TBW_068 IL_95997.1 | |
| IL_6KE6_069 | 1/SA/874:878, 1/SA/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_6KE6_070 | 1/SA/885:888, 1/SA/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6KE6_071 | 1/SA/893:899, 1/SA/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_6KE6_072 | 1/SA/1033:1034, 1/SA/1083:1085 | Single bulged A Not in a motif group | geometric IL_5CNR_002 IL_37497.2 | |
| IL_6KE6_073 | 1/SA/1035:1039, 1/SA/1079:1082 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_6KE6_074 | 1/SA/1041:1044, 1/SA/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_6KE6_075 | 1/SA/1051:1053, 1/SA/1066:1067 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_6KE6_076 | 1/SA/1157:1160, 1/SA/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6KE6_077 | 1/SA/1173:1174, 1/SA/1464:1466 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_76488.2 | |
| IL_6KE6_078 | 1/SA/1174:1176, 1/SA/1463:1464 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_42622.2 | |
| IL_6KE6_079 | 1/SA/1213:1216, 1/SA/1448:1451 | No text annotation Not in a motif group | ||
| IL_6KE6_080 | 1/SA/1268:1270, 1/SA/1440:1441 | No text annotation Not in a motif group | ||
| IL_6KE6_081 | 1/SA/1470:1474, 1/SA/1533:1574 | No text annotation Not in a motif group | ||
| IL_6KE6_082 | 1/SA/1495:1498, 1/SA/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_6KE6_083 | 1/SA/1650:1652, 1/SA/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6KE6_084 | 1/SA/1653:1659, 1/SA/1742:1747 | No text annotation Not in a motif group | ||
| IL_6KE6_085 | 1/SA/1664:1667, 1/SA/1734:1737 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_001 IL_30621.2 | |
| IL_6KE6_086 | 1/SA/1669:1672, 1/SA/1729:1732 | Double sheared Not in a motif group | geometric IL_5BTP_004 IL_09705.9 | |
| IL_6KE6_087 | 1/SA/1672:1674, 1/SA/1727:1729 | No text annotation Not in a motif group | homologous IL_4V88_472 IL_95997.1 | |
| IL_6KE6_088 | 1/SA/1688:1690, 1/SA/1711:1713 | No text annotation Not in a motif group | ||
| IL_6KE6_089 | 1/SA/1693:1695, 1/SA/1706:1708 | Isolated near basepair Not in a motif group | geometric IL_3NJ7_003 IL_52767.2 | |
| IL_6KE6_090 | 1/SA/1697:1699, 1/SA/1703:1704 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6KE6_005 | No text annotation | ||
| IL_6KE6_006 | No text annotation | ||
| IL_6KE6_028 | Single bulged A | ||
| IL_6KE6_063 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6KE6_002 | 1/SA/633:635, 1/SA/861:865, 1/SA/965:966 | No text annotation Not in a motif group | ||
| J3_6KE6_003 | 1/SA/881:884, 1/SA/928:936, 1/SA/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6KE6_004 | 1/SA/1150:1151, 1/SA/1627:1629, 1/SA/1636:1640 | No text annotation Not in a motif group | ||
| J3_6KE6_005 | 1/SA/1168:1171, 1/SA/1468:1470, 1/SA/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6KE6_006 | 1/SA/1216:1220, 1/SA/1263:1268, 1/SA/1441:1448 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6KE6_001 | No text annotation |
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