6ZQG Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6ZQG_001 | 1/D3/8:16 | No text annotation Not in a motif group | geometric HL_3DIL_002 HL_76501.1 | |
| HL_6ZQG_002 | 1/D3/70:81 | No text annotation Not in a motif group | homologous HL_4V88_187 HL_40069.1 | |
| HL_6ZQG_003 | 1/D3/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6ZQG_004 | 1/D3/190:195 | No text annotation Not in a motif group | ||
| HL_6ZQG_005 | 1/D3/230:235 | No text annotation Not in a motif group | homologous HL_8C3A_196 HL_81440.1 | |
| HL_6ZQG_006 | 1/D3/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6ZQG_007 | 1/D3/276:279 | No text annotation Not in a motif group | homologous HL_4V88_192 HL_53837.1 | |
| HL_6ZQG_008 | 1/D3/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6ZQG_009 | 1/D3/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6ZQG_010 | 1/D3/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6ZQG_011 | 1/D3/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6ZQG_012 | 1/D3/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6ZQG_013 | 1/D3/489:498 | No text annotation Not in a motif group | ||
| HL_6ZQG_014 | 1/D3/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_6ZQG_015 | 1/D3/561:566 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6ZQG_016 | 1/D3/717:722 | No text annotation Not in a motif group | ||
| HL_6ZQG_017 | 1/D3/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6ZQG_018 | 1/D3/777:783 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6ZQG_019 | 1/D3/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_6ZQG_020 | 1/D3/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6ZQG_021 | 1/D3/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6ZQG_022 | 1/D3/997:1007 | No text annotation Not in a motif group | geometric HL_7A0S_011 HL_75407.1 | |
| HL_6ZQG_023 | 1/D3/1055:1064 | No text annotation Not in a motif group | ||
| HL_6ZQG_024 | 1/D3/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6ZQG_026 | 1/D3/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6ZQG_027 | 1/D3/1550:1561 | No text annotation Not in a motif group | ||
| HL_6ZQG_028 | 1/D3/1594:1602 | No text annotation Not in a motif group | geometric HL_4OOG_001 HL_65572.2 | |
| HL_6ZQG_029 | 1/D3/1629:1637 | No text annotation Not in a motif group | ||
| HL_6ZQG_031 | 1/D3/1778:1783 | No text annotation Not in a motif group | geometric HL_6AAX_001 HL_94803.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6ZQG_025 | No text annotation | ||
| HL_6ZQG_030 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6ZQG_002 | 1/D3/35:37, 1/D3/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_6ZQG_003 | 1/D3/37:41, 1/D3/466:471 | No text annotation Not in a motif group | ||
| IL_6ZQG_004 | 1/D3/50:52, 1/D3/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6ZQG_005 | 1/D3/58:63, 1/D3/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6ZQG_006 | 1/D3/64:69, 1/D3/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6ZQG_007 | 1/D3/109:112, 1/D3/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6ZQG_008 | 1/D3/113:116, 1/D3/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6ZQG_009 | 1/D3/117:122, 1/D3/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6ZQG_010 | 1/D3/144:149, 1/D3/165:171 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4LFB_009 IL_39753.1 | |
| IL_6ZQG_011 | 1/D3/150:152, 1/D3/162:164 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_6ZQG_012 | 1/D3/186:190, 1/D3/195:199 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_6ZQG_013 | 1/D3/204:206, 1/D3/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_6ZQG_014 | 1/D3/206:208, 1/D3/257:259 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_95997.1 | |
| IL_6ZQG_015 | 1/D3/265:267, 1/D3/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6ZQG_016 | 1/D3/270:273, 1/D3/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6ZQG_017 | 1/D3/275:276, 1/D3/279:281 | Single bulged U Not in a motif group | geometric IL_5F9R_003 IL_83039.13 | |
| IL_6ZQG_018 | 1/D3/311:316, 1/D3/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6ZQG_019 | 1/D3/318:323, 1/D3/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6ZQG_020 | 1/D3/363:365, 1/D3/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6ZQG_021 | 1/D3/389:391, 1/D3/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6ZQG_022 | 1/D3/411:413, 1/D3/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6ZQG_023 | 1/D3/439:441, 1/D3/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_6ZQG_024 | 1/D3/443:447, 1/D3/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6ZQG_025 | 1/D3/447:448, 1/D3/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6ZQG_026 | 1/D3/480:483, 1/D3/504:508 | No text annotation Not in a motif group | ||
| IL_6ZQG_027 | 1/D3/514:516, 1/D3/536:543 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_6ZQG_028 | 1/D3/517:518, 1/D3/533:535 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_6ZQG_029 | 1/D3/518:520, 1/D3/532:533 | Minor groove platform Not in a motif group | homologous IL_4V88_412 IL_93353.1 | |
| IL_6ZQG_030 | 1/D3/551:552, 1/D3/584:587 | Multiple bulged bases Not in a motif group | geometric IL_3IGI_013 IL_71530.2 | |
| IL_6ZQG_031 | 1/D3/552:559, 1/D3/568:584 | No text annotation Not in a motif group | ||
| IL_6ZQG_032 | 1/D3/616:622, 1/D3/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6ZQG_033 | 1/D3/624:626, 1/D3/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6ZQG_034 | 1/D3/627:631, 1/D3/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6ZQG_035 | 1/D3/646:648, 1/D3/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_6ZQG_036 | 1/D3/651:658, 1/D3/676:683 | No text annotation Not in a motif group | ||
| IL_6ZQG_037 | 1/D3/703:708, 1/D3/730:735 | No text annotation Not in a motif group | ||
| IL_6ZQG_038 | 1/D3/708:712, 1/D3/726:730 | No text annotation Not in a motif group | ||
| IL_6ZQG_039 | 1/D3/715:717, 1/D3/722:723 | No text annotation Not in a motif group | ||
| IL_6ZQG_040 | 1/D3/746:747, 1/D3/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_6ZQG_041 | 1/D3/748:750, 1/D3/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6ZQG_042 | 1/D3/751:759, 1/D3/791:798 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_6ZQG_043 | 1/D3/817:822, 1/D3/850:854 | No text annotation Not in a motif group | geometric IL_5BTM_001 IL_05145.2 | |
| IL_6ZQG_044 | 1/D3/865:866, 1/D3/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_6ZQG_045 | 1/D3/868:870, 1/D3/957:960 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_6ZQG_046 | 1/D3/871:874, 1/D3/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_6ZQG_047 | 1/D3/874:878, 1/D3/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_6ZQG_048 | 1/D3/885:888, 1/D3/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6ZQG_049 | 1/D3/893:895, 1/D3/917:919 | No text annotation Not in a motif group | geometric IL_2OE5_001 IL_95997.1 | |
| IL_6ZQG_050 | 1/D3/895:899, 1/D3/910:917 | Kink-turn Not in a motif group | homologous IL_4V88_434 IL_45067.2 | |
| IL_6ZQG_051 | 1/D3/985:990, 1/D3/1014:1016 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_6ZQG_052 | 1/D3/990:994, 1/D3/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_6ZQG_053 | 1/D3/1034:1036, 1/D3/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6ZQG_054 | 1/D3/1041:1044, 1/D3/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_6ZQG_055 | 1/D3/1051:1053, 1/D3/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_6ZQG_056 | 1/D3/1117:1119, 1/D4/6:7 | Single bulged G Not in a motif group | geometric IL_5TBW_037 IL_00225.2 | |
| IL_6ZQG_057 | 1/D3/1122:1123, 1/D4/1:3 | Single bulged U Not in a motif group | geometric IL_5TBW_093 IL_83039.13 | |
| IL_6ZQG_058 | 1/D3/1157:1160, 1/D3/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6ZQG_059 | 1/D3/1173:1175, 1/D3/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6ZQG_060 | 1/D3/1178:1179, 1/D3/1459:1461 | No text annotation Not in a motif group | ||
| IL_6ZQG_061 | 1/D3/1480:1487, 1/D3/1519:1527 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_6ZQG_062 | 1/D3/1488:1494, 1/D3/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_6ZQG_063 | 1/D3/1495:1499, 1/D3/1509:1512 | UAA/GAN related Not in a motif group | geometric IL_3IGI_009 IL_77691.1 | |
| IL_6ZQG_064 | 1/D3/1499:1500, 1/D3/1507:1509 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_6ZQG_065 | 1/D3/1540:1545, 1/D3/1566:1571 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_6ZQG_066 | 1/D3/1650:1653, 1/D3/1748:1750 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6ZQG_001 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6ZQG_001 | 1/D3/41:48, 1/D3/431:439, 1/D3/464:466 | No text annotation Not in a motif group | ||
| J3_6ZQG_002 | 1/D3/633:635, 1/D3/861:865, 1/D3/965:966 | No text annotation Not in a motif group | ||
| J3_6ZQG_003 | 1/D3/760:763, 1/D3/773:775, 1/D3/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_6ZQG_004 | 1/D3/881:884, 1/D3/928:936, 1/D3/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6ZQG_005 | 1/D3/1037:1039, 1/D3/1079:1083, 1/D3/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6ZQG_006 | 1/D3/1150:1151, 1/D3/1627:1629, 1/D3/1637:1640 | No text annotation Not in a motif group | ||
| J3_6ZQG_007 | 1/D3/1168:1171, 1/D3/1468:1470, 1/D3/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6ZQG_008 | 1/D3/1470:1474, 1/D3/1533:1540, 1/D3/1571:1574 | No text annotation Not in a motif group | homologous J3_8C3A_044 NA |
Problematic loops
No problematic loops
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