7SYJ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7SYJ_001 | 1/2/7:17 | No text annotation Not in a motif group | geometric HL_4V88_186 HL_89881.2 | |
HL_7SYJ_002 | 1/2/69:80 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.4 | |
HL_7SYJ_003 | 1/2/155:163 | No text annotation Not in a motif group | ||
HL_7SYJ_004 | 1/2/196:203 | No text annotation Not in a motif group | ||
HL_7SYJ_005 | 1/2/288:295 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_56241.2 | |
HL_7SYJ_007 | 1/2/377:387 | No text annotation Not in a motif group | geometric HL_6UFM_001 HL_00206.1 | |
HL_7SYJ_008 | 1/2/415:422 | No text annotation Not in a motif group | geometric HL_7RQB_057 NA | |
HL_7SYJ_009 | 1/2/441:452 | No text annotation Not in a motif group | geometric HL_4V88_195 HL_84288.1 | |
HL_7SYJ_010 | 1/2/462:467 | UNCG Not in a motif group | geometric HL_4LFB_009 HL_29960.1 | |
HL_7SYJ_011 | 1/2/498:504 | No text annotation Not in a motif group | geometric HL_7A0S_011 HL_70546.2 | |
HL_7SYJ_012 | 1/2/537:546 | No text annotation Not in a motif group | ||
HL_7SYJ_013 | 1/2/569:581 | No text annotation Not in a motif group | homologous HL_8C3A_205 HL_06285.3 | |
HL_7SYJ_014 | 1/2/618:623 | Other HL Not in a motif group | geometric HL_4V88_200 HL_53845.3 | |
HL_7SYJ_016 | 1/2/820:828 | No text annotation Not in a motif group | geometric HL_4V88_203 HL_46766.2 | |
HL_7SYJ_018 | 1/2/885:901 | No text annotation Not in a motif group | ||
HL_7SYJ_019 | 1/2/957:966 | No text annotation Not in a motif group | homologous HL_8C3A_211 HL_12326.2 | |
HL_7SYJ_020 | 1/2/994:999 | Other HL Not in a motif group | geometric HL_1G1X_005 HL_87030.3 | |
HL_7SYJ_021 | 1/2/1054:1064 | No text annotation Not in a motif group | geometric HL_4V88_208 HL_12326.2 | |
HL_7SYJ_022 | 1/2/1113:1120 | No text annotation Not in a motif group | ||
HL_7SYJ_023 | 1/2/1141:1146 | Other HL Not in a motif group | geometric HL_4V88_210 HL_85603.1 | |
HL_7SYJ_024 | 1/2/1178:1183 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_70546.2 | |
HL_7SYJ_025 | 1/2/1245:1254 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_70546.2 | |
HL_7SYJ_026 | 1/2/1294:1305 | No text annotation Not in a motif group | ||
HL_7SYJ_027 | 1/2/1351:1360 | No text annotation Not in a motif group | ||
HL_7SYJ_028 | 1/2/1366:1373 | No text annotation Not in a motif group | geometric HL_4V88_215 HL_71554.2 | |
HL_7SYJ_030 | 1/2/1460:1466 | No text annotation Not in a motif group | geometric HL_5J7L_026 HL_90617.4 | |
HL_7SYJ_031 | 1/2/1565:1570 | No text annotation Not in a motif group | geometric HL_7A0S_068 HL_85603.1 | |
HL_7SYJ_032 | 1/2/1614:1625 | No text annotation Not in a motif group | homologous HL_8C3A_224 HL_75768.1 | |
HL_7SYJ_033 | 1/2/1658:1666 | No text annotation Not in a motif group | homologous HL_8C3A_225 HL_75828.1 | |
HL_7SYJ_035 | 1/2/1846:1853 | No text annotation Not in a motif group | ||
HL_7SYJ_036 | 1/z/161:166 | No text annotation Not in a motif group | ||
HL_7SYJ_038 | 1/z/232:235 | No text annotation Not in a motif group | ||
HL_7SYJ_039 | 1/z/261:272 | No text annotation Not in a motif group | ||
HL_7SYJ_040 | 1/z/280:283 | No text annotation Not in a motif group | ||
HL_7SYJ_041 | 1/z/304:313 | No text annotation Not in a motif group |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7SYJ_006 | No text annotation | ||
HL_7SYJ_015 | No text annotation | ||
HL_7SYJ_017 | No text annotation | ||
HL_7SYJ_029 | No text annotation | ||
HL_7SYJ_034 | No text annotation | ||
HL_7SYJ_037 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7SYJ_001 | 1/2/23:25, 1/2/649:651 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_86319.3 | |
IL_7SYJ_002 | 1/2/34:36, 1/2/519:521 | Isolated cWH basepair Not in a motif group | geometric IL_4KQ0_003 IL_70707.3 | |
IL_7SYJ_003 | 1/2/37:40, 1/2/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.11 | |
IL_7SYJ_004 | 1/2/41:47, 1/2/479:481 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
IL_7SYJ_005 | 1/2/49:51, 1/2/476:477 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_80097.2 | |
IL_7SYJ_006 | 1/2/63:68, 1/2/81:85 | No text annotation Not in a motif group | geometric IL_4V88_390 IL_77691.2 | |
IL_7SYJ_007 | 1/2/108:110, 1/2/351:353 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_86319.3 | |
IL_7SYJ_008 | 1/2/110:115, 1/2/348:351 | No text annotation Not in a motif group | ||
IL_7SYJ_009 | 1/2/116:121, 1/2/343:347 | No text annotation Not in a motif group | geometric IL_4V88_393 IL_64181.2 | |
IL_7SYJ_010 | 1/2/123:125, 1/2/338:341 | No text annotation Not in a motif group | ||
IL_7SYJ_012 | 1/2/145:151, 1/2/167:174 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4V88_394 IL_80604.2 | |
IL_7SYJ_013 | 1/2/152:155, 1/2/163:166 | No text annotation Not in a motif group | homologous IL_8C3A_403 IL_67743.1 | |
IL_7SYJ_014 | 1/2/188:192, 1/2/207:211 | Triple sheared Not in a motif group | geometric IL_7A0S_056 IL_41507.1 | |
IL_7SYJ_016 | 1/2/312:314, 1/2/336:337 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.7 | |
IL_7SYJ_017 | 1/2/315:319, 1/2/332:335 | No text annotation Not in a motif group | ||
IL_7SYJ_018 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_5J7L_014 IL_45067.3 | |
IL_7SYJ_019 | 1/2/366:371, 1/2/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
IL_7SYJ_020 | 1/2/411:413, 1/2/424:429 | No text annotation Not in a motif group | geometric IL_4V88_404 IL_11347.1 | |
IL_7SYJ_021 | 1/2/437:439, 1/2/454:457 | No text annotation Not in a motif group | ||
IL_7SYJ_022 | 1/2/487:489, 1/2/511:512 | Single bulged U Not in a motif group | geometric IL_3D2V_001 IL_83039.17 | |
IL_7SYJ_023 | 1/2/491:495, 1/2/508:509 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
IL_7SYJ_024 | 1/2/495:496, 1/2/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.4 | |
IL_7SYJ_025 | 1/2/529:531, 1/2/553:556 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_009 IL_43275.2 | |
IL_7SYJ_026 | 1/2/535:537, 1/2/546:549 | No text annotation Not in a motif group | ||
IL_7SYJ_027 | 1/2/563:569, 1/2/581:592 | No text annotation Not in a motif group | ||
IL_7SYJ_028 | 1/2/598:608, 1/2/635:638 | No text annotation Not in a motif group | ||
IL_7SYJ_029 | 1/2/611:617, 1/2/624:632 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
IL_7SYJ_030 | 1/2/663:665, 1/2/1162:1164 | No text annotation Not in a motif group | geometric IL_6IA2_005 IL_86319.3 | |
IL_7SYJ_031 | 1/2/665:671, 1/2/1161:1162 | No text annotation Not in a motif group | geometric IL_6CZR_134 IL_38186.1 | |
IL_7SYJ_032 | 1/2/673:675, 1/2/1030:1032 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_70707.3 | |
IL_7SYJ_033 | 1/2/676:680, 1/2/1025:1029 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_418 IL_17136.2 | |
IL_7SYJ_034 | 1/2/692:696, 1/2/730:734 | No text annotation Not in a motif group | ||
IL_7SYJ_036 | 1/2/750:754, 1/2/790:793 | No text annotation Not in a motif group | ||
IL_7SYJ_037 | 1/2/802:805, 1/2/858:863 | No text annotation Not in a motif group | ||
IL_7SYJ_038 | 1/2/805:807, 1/2/856:858 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_86319.3 | |
IL_7SYJ_039 | 1/2/807:815, 1/2/849:856 | No text annotation Not in a motif group | geometric IL_4V88_425 IL_69091.1 | |
IL_7SYJ_040 | 1/2/874:876, 1/2/910:912 | No text annotation Not in a motif group | geometric IL_7A0S_014 IL_86319.3 | |
IL_7SYJ_041 | 1/2/876:879, 1/2/907:910 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.4 | |
IL_7SYJ_042 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_6N5P_003 IL_50694.3 | |
IL_7SYJ_043 | 1/2/924:927, 1/2/1014:1018 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.4 | |
IL_7SYJ_044 | 1/2/927:929, 1/2/1013:1014 | Single stack bend Not in a motif group | geometric IL_5J7L_269 IL_76488.5 | |
IL_7SYJ_045 | 1/2/929:931, 1/2/1010:1013 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.2 | |
IL_7SYJ_046 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.4 | |
IL_7SYJ_047 | 1/2/942:945, 1/2/981:984 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_432 IL_30621.4 | |
IL_7SYJ_048 | 1/2/951:956, 1/2/967:975 | Kink-turn Not in a motif group | geometric IL_4LFB_031 IL_37722.1 | |
IL_7SYJ_049 | 1/2/1041:1047, 1/2/1071:1074 | No text annotation Not in a motif group | ||
IL_7SYJ_050 | 1/2/1047:1051, 1/2/1067:1071 | tSH-tHW-tHS Not in a motif group | geometric IL_6CZR_145 IL_17136.2 | |
IL_7SYJ_051 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation Not in a motif group | geometric IL_4V88_437 IL_19557.3 | |
IL_7SYJ_052 | 1/2/1098:1103, 1/2/1129:1134 | No text annotation Not in a motif group | ||
IL_7SYJ_053 | 1/2/1108:1111, 1/2/1122:1124 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.2 | |
IL_7SYJ_054 | 1/2/1168:1175, 1/2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_4LFB_034 IL_24606.2 | |
IL_7SYJ_055 | 1/2/1202:1208, 1/2/1691:1697 | No text annotation Not in a motif group | ||
IL_7SYJ_056 | 1/2/1214:1217, 1/2/1681:1685 | C-loop Not in a motif group | geometric IL_4V88_443 IL_63596.7 | |
IL_7SYJ_057 | 1/2/1230:1232, 1/2/1526:1528 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_86319.3 | |
IL_7SYJ_058 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform Not in a motif group | geometric IL_7A0S_028 IL_42622.5 | |
IL_7SYJ_059 | 1/2/1268:1273, 1/2/1510:1514 | No text annotation Not in a motif group | ||
IL_7SYJ_060 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U Not in a motif group | geometric IL_4V9F_107 IL_83039.17 | |
IL_7SYJ_061 | 1/2/1329:1336, 1/2/1491:1500 | No text annotation Not in a motif group | ||
IL_7SYJ_062 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A Not in a motif group | geometric IL_4WF9_006 IL_37497.7 | |
IL_7SYJ_063 | 1/2/1338:1340, 1/2/1487:1488 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.5 | |
IL_7SYJ_064 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair Not in a motif group | geometric IL_6RA4_002 IL_70707.3 | |
IL_7SYJ_065 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_42622.5 | |
IL_7SYJ_066 | 1/2/1395:1399, 1/2/1447:1450 | No text annotation Not in a motif group | homologous IL_8C3A_461 IL_67743.1 | |
IL_7SYJ_067 | 1/2/1402:1406, 1/2/1440:1444 | No text annotation Not in a motif group | ||
IL_7SYJ_068 | 1/2/1412:1413, 1/2/1427:1429 | Single bulged G Not in a motif group | geometric IL_2IZN_001 IL_00225.4 | |
IL_7SYJ_069 | 1/2/1537:1539, 1/2/1594:1596 | No text annotation Not in a motif group | geometric IL_2O3Y_001 IL_86319.3 | |
IL_7SYJ_070 | 1/2/1550:1558, 1/2/1577:1582 | No text annotation Not in a motif group | geometric IL_4LFB_052 IL_84205.1 | |
IL_7SYJ_071 | 1/2/1560:1563, 1/2/1572:1575 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.4 | |
IL_7SYJ_072 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation Not in a motif group | ||
IL_7SYJ_073 | 1/2/1702:1708, 1/2/1826:1833 | No text annotation Not in a motif group | ||
IL_7SYJ_074 | 1/2/1708:1712, 1/2/1821:1826 | No text annotation Not in a motif group | ||
IL_7SYJ_075 | 1/2/1713:1717, 1/2/1816:1820 | No text annotation Not in a motif group | ||
IL_7SYJ_076 | 1/2/1717:1720, 1/2/1813:1816 | Double sheared Not in a motif group | geometric IL_5AOX_003 IL_09705.11 | |
IL_7SYJ_077 | 1/2/1720:1723, 1/2/1811:1813 | No text annotation Not in a motif group | geometric IL_7A0S_031 IL_86319.3 | |
IL_7SYJ_078 | 1/2/1729:1731, 1/2/1803:1805 | No text annotation Not in a motif group | geometric IL_6E7L_003 IL_86319.3 | |
IL_7SYJ_079 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.11 | |
IL_7SYJ_080 | 1/2/1739:1741, 1/2/1793:1795 | UU cWW water inserted Not in a motif group | geometric IL_4E48_002 IL_86319.3 | |
IL_7SYJ_081 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared Not in a motif group | geometric IL_7RQB_075 NA | |
IL_7SYJ_082 | 1/2/1750:1751, 1/2/1782:1784 | No text annotation Not in a motif group | ||
IL_7SYJ_083 | 1/2/1751:1753, 1/2/1780:1782 | No text annotation Not in a motif group | ||
IL_7SYJ_084 | 1/2/1753:1754, 1/2/1778:1780 | No text annotation Not in a motif group | ||
IL_7SYJ_085 | 1/z/135:138, 1/z/286:289 | No text annotation Not in a motif group | ||
IL_7SYJ_086 | 1/z/149:150, 1/z/242:244 | No text annotation Not in a motif group | ||
IL_7SYJ_087 | 1/z/255:261, 1/z/272:277 | No text annotation Not in a motif group |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7SYJ_011 | No text annotation | ||
IL_7SYJ_015 | No text annotation | ||
IL_7SYJ_035 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7SYJ_001 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation Not in a motif group | ||
J3_7SYJ_002 | 1/2/682:684, 1/2/918:922, 1/2/1022:1023 | No text annotation Not in a motif group | ||
J3_7SYJ_003 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation Not in a motif group | ||
J3_7SYJ_004 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation Not in a motif group | ||
J3_7SYJ_005 | 1/2/1094:1097, 1/2/1135:1140, 1/2/1147:1151 | No text annotation Not in a motif group | ||
J3_7SYJ_006 | 1/2/1218:1222, 1/2/1644:1651, 1/2/1673:1680 | No text annotation Not in a motif group | ||
J3_7SYJ_007 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
J3_7SYJ_008 | 1/2/1237:1245, 1/2/1254:1266, 1/2/1516:1520 | No text annotation Not in a motif group | ||
J3_7SYJ_009 | 1/2/1273:1277, 1/2/1320:1324, 1/2/1504:1510 | No text annotation Not in a motif group | ||
J3_7SYJ_010 | 1/2/1340:1347, 1/2/1382:1389, 1/2/1481:1487 | No text annotation Not in a motif group | ||
J3_7SYJ_011 | 1/2/1350:1351, 1/2/1360:1363, 1/2/1375:1379 | No text annotation Not in a motif group | ||
J3_7SYJ_012 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation Not in a motif group | homologous J3_8C3A_044 NA | |
J3_7SYJ_013 | 1/z/133:135, 1/z/289:303, 1/z/314:315 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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