Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7SYJ_0011/2/7:17No text annotation
Not in a motif group
geometric
HL_4V88_186
HL_89881.2
HL_7SYJ_0021/2/69:80No text annotation
Not in a motif group
geometric
HL_361D_002
HL_90617.3
HL_7SYJ_0031/2/155:163No text annotation
Not in a motif group
HL_7SYJ_0041/2/196:203No text annotation
Not in a motif group
HL_7SYJ_0051/2/288:295T-loop with 1 bulged base
Not in a motif group
geometric
HL_4V88_191
HL_56241.1
HL_7SYJ_0071/2/377:387No text annotation
Not in a motif group
geometric
HL_6UFM_001
HL_00206.1
HL_7SYJ_0081/2/415:422No text annotation
Not in a motif group
geometric
HL_7RQB_057
HL_53619.1
HL_7SYJ_0091/2/441:452No text annotation
Not in a motif group
geometric
HL_4V88_195
HL_84288.1
HL_7SYJ_0101/2/462:467UNCG
Not in a motif group
geometric
HL_4LFB_009
HL_03562.2
HL_7SYJ_0111/2/498:504No text annotation
Not in a motif group
geometric
HL_7A0S_011
HL_70546.1
HL_7SYJ_0121/2/537:546No text annotation
Not in a motif group
HL_7SYJ_0131/2/569:581No text annotation
Not in a motif group
homologous
HL_8C3A_205
HL_06285.3
HL_7SYJ_0141/2/618:623Other HL
Not in a motif group
geometric
HL_4V88_200
HL_53845.3
HL_7SYJ_0161/2/820:828No text annotation
Not in a motif group
geometric
HL_4V88_203
HL_46766.2
HL_7SYJ_0181/2/885:901No text annotation
Not in a motif group
HL_7SYJ_0191/2/957:966No text annotation
Not in a motif group
homologous
HL_8C3A_211
HL_12326.1
HL_7SYJ_0201/2/994:999Other HL
Not in a motif group
geometric
HL_1G1X_005
HL_87030.2
HL_7SYJ_0211/2/1054:1064No text annotation
Not in a motif group
geometric
HL_4V88_208
HL_12326.1
HL_7SYJ_0221/2/1113:1120No text annotation
Not in a motif group
HL_7SYJ_0231/2/1141:1146Other HL
Not in a motif group
geometric
HL_4V88_210
HL_35490.2
HL_7SYJ_0241/2/1178:1183No text annotation
Not in a motif group
geometric
HL_4WF9_011
HL_70546.1
HL_7SYJ_0251/2/1245:1254No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_70546.1
HL_7SYJ_0261/2/1294:1305No text annotation
Not in a motif group
HL_7SYJ_0271/2/1351:1360No text annotation
Not in a motif group
HL_7SYJ_0281/2/1366:1373No text annotation
Not in a motif group
geometric
HL_4V88_215
HL_71554.2
HL_7SYJ_0301/2/1460:1466No text annotation
Not in a motif group
geometric
HL_5J7L_026
HL_90617.3
HL_7SYJ_0311/2/1565:1570No text annotation
Not in a motif group
geometric
HL_7A0S_068
HL_35490.2
HL_7SYJ_0321/2/1614:1625No text annotation
Not in a motif group
homologous
HL_8C3A_224
HL_22554.1
HL_7SYJ_0331/2/1658:1666No text annotation
Not in a motif group
homologous
HL_8C3A_225
HL_75828.1
HL_7SYJ_0351/2/1846:1853No text annotation
Not in a motif group
HL_7SYJ_0361/z/161:166No text annotation
Not in a motif group
HL_7SYJ_0381/z/232:235No text annotation
Not in a motif group
HL_7SYJ_0391/z/261:272No text annotation
Not in a motif group
HL_7SYJ_0401/z/280:283No text annotation
Not in a motif group
HL_7SYJ_0411/z/304:313No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_7SYJ_006No text annotation
HL_7SYJ_015No text annotation
HL_7SYJ_017No text annotation
HL_7SYJ_029No text annotation
HL_7SYJ_034No text annotation
HL_7SYJ_037No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7SYJ_0011/2/23:25,
1/2/649:651
No text annotation
Not in a motif group
geometric
IL_5TBW_103
IL_86319.2
IL_7SYJ_0021/2/34:36,
1/2/519:521
Isolated cWH basepair
Not in a motif group
geometric
IL_4KQ0_003
IL_70707.2
IL_7SYJ_0031/2/37:40,
1/2/514:518
Double sheared
Not in a motif group
geometric
IL_4WF9_016
IL_09705.10
IL_7SYJ_0041/2/41:47,
1/2/479:481
No text annotation
Not in a motif group
geometric
IL_4V88_387
IL_33912.1
IL_7SYJ_0051/2/49:51,
1/2/476:477
Minor groove platform
Not in a motif group
geometric
IL_4V88_388
IL_80097.1
IL_7SYJ_0061/2/63:68,
1/2/81:85
No text annotation
Not in a motif group
geometric
IL_4V88_390
IL_77691.2
IL_7SYJ_0071/2/108:110,
1/2/351:353
CC cWW
Not in a motif group
geometric
IL_4E59_001
IL_86319.2
IL_7SYJ_0081/2/110:115,
1/2/348:351
No text annotation
Not in a motif group
IL_7SYJ_0091/2/116:121,
1/2/343:347
No text annotation
Not in a motif group
geometric
IL_4V88_393
IL_64181.2
IL_7SYJ_0101/2/123:125,
1/2/338:341
No text annotation
Not in a motif group
IL_7SYJ_0121/2/145:151,
1/2/167:174
tWH-tWH-tHW-tHW
Not in a motif group
geometric
IL_4V88_394
IL_80604.2
IL_7SYJ_0131/2/152:155,
1/2/163:166
No text annotation
Not in a motif group
homologous
IL_8C3A_403
IL_67743.1
IL_7SYJ_0141/2/188:192,
1/2/207:211
Triple sheared
Not in a motif group
geometric
IL_7A0S_056
IL_41507.1
IL_7SYJ_0161/2/312:314,
1/2/336:337
Single bulged A
Not in a motif group
geometric
IL_4V88_399
IL_37497.6
IL_7SYJ_0171/2/315:319,
1/2/332:335
No text annotation
Not in a motif group
IL_7SYJ_0181/2/359:364,
1/2/396:403
Kink-turn with non-sequential stacking
Not in a motif group
geometric
IL_5J7L_014
IL_45067.2
IL_7SYJ_0191/2/366:371,
1/2/393:394
No text annotation
Not in a motif group
geometric
IL_5Y58_001
IL_48100.2
IL_7SYJ_0201/2/411:413,
1/2/424:429
No text annotation
Not in a motif group
geometric
IL_4V88_404
IL_11347.1
IL_7SYJ_0211/2/437:439,
1/2/454:457
No text annotation
Not in a motif group
IL_7SYJ_0221/2/487:489,
1/2/511:512
Single bulged U
Not in a motif group
geometric
IL_3D2V_001
IL_83039.16
IL_7SYJ_0231/2/491:495,
1/2/508:509
C-loop
Not in a motif group
geometric
IL_4LFB_015
IL_75255.1
IL_7SYJ_0241/2/495:496,
1/2/506:508
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.3
IL_7SYJ_0251/2/529:531,
1/2/553:556
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_009
IL_43275.1
IL_7SYJ_0261/2/535:537,
1/2/546:549
No text annotation
Not in a motif group
IL_7SYJ_0271/2/563:569,
1/2/581:592
No text annotation
Not in a motif group
IL_7SYJ_0281/2/598:608,
1/2/635:638
No text annotation
Not in a motif group
IL_7SYJ_0291/2/611:617,
1/2/624:632
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_7SYJ_0301/2/663:665,
1/2/1162:1164
No text annotation
Not in a motif group
geometric
IL_6IA2_005
IL_86319.2
IL_7SYJ_0311/2/665:671,
1/2/1161:1162
No text annotation
Not in a motif group
geometric
IL_6CZR_134
IL_69996.1
IL_7SYJ_0321/2/673:675,
1/2/1030:1032
No text annotation
Not in a motif group
geometric
IL_4YHW_001
IL_70707.2
IL_7SYJ_0331/2/676:680,
1/2/1025:1029
tSH-tHW-tHS
Not in a motif group
geometric
IL_4V88_418
IL_17136.1
IL_7SYJ_0341/2/692:696,
1/2/730:734
No text annotation
Not in a motif group
IL_7SYJ_0361/2/750:754,
1/2/790:793
No text annotation
Not in a motif group
IL_7SYJ_0371/2/802:805,
1/2/858:863
No text annotation
Not in a motif group
IL_7SYJ_0381/2/805:807,
1/2/856:858
UU cWW
Not in a motif group
geometric
IL_3SZX_003
IL_86319.2
IL_7SYJ_0391/2/807:815,
1/2/849:856
No text annotation
Not in a motif group
geometric
IL_4V88_425
IL_69091.1
IL_7SYJ_0401/2/874:876,
1/2/910:912
No text annotation
Not in a motif group
geometric
IL_7A0S_014
IL_86319.2
IL_7SYJ_0411/2/876:879,
1/2/907:910
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_438
IL_30621.4
IL_7SYJ_0421/2/922:923,
1/2/1019:1022
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_6N5P_003
IL_50694.2
IL_7SYJ_0431/2/924:927,
1/2/1014:1018
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_429
IL_30621.4
IL_7SYJ_0441/2/927:929,
1/2/1013:1014
Single stack bend
Not in a motif group
geometric
IL_5J7L_269
IL_76488.4
IL_7SYJ_0451/2/929:931,
1/2/1010:1013
No text annotation
Not in a motif group
geometric
IL_4P3T_002
IL_46796.1
IL_7SYJ_0461/2/931:935,
1/2/1007:1010
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_431
IL_30621.4
IL_7SYJ_0471/2/942:945,
1/2/981:984
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_432
IL_30621.4
IL_7SYJ_0481/2/951:956,
1/2/967:975
Kink-turn
Not in a motif group
geometric
IL_4LFB_031
IL_37722.1
IL_7SYJ_0491/2/1041:1047,
1/2/1071:1074
No text annotation
Not in a motif group
IL_7SYJ_0501/2/1047:1051,
1/2/1067:1071
tSH-tHW-tHS
Not in a motif group
geometric
IL_6CZR_145
IL_17136.1
IL_7SYJ_0511/2/1091:1093,
1/2/1152:1158
No text annotation
Not in a motif group
geometric
IL_4V88_437
IL_19557.3
IL_7SYJ_0521/2/1098:1103,
1/2/1129:1134
No text annotation
Not in a motif group
IL_7SYJ_0531/2/1108:1111,
1/2/1122:1124
No text annotation
Not in a motif group
geometric
IL_4P3T_002
IL_46796.1
IL_7SYJ_0541/2/1168:1175,
1/2/1186:1191
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
geometric
IL_4LFB_034
IL_24606.2
IL_7SYJ_0551/2/1202:1208,
1/2/1691:1697
No text annotation
Not in a motif group
IL_7SYJ_0561/2/1214:1217,
1/2/1681:1685
C-loop
Not in a motif group
geometric
IL_4V88_443
IL_63596.6
IL_7SYJ_0571/2/1230:1232,
1/2/1526:1528
No text annotation
Not in a motif group
geometric
IL_5TBW_027
IL_86319.2
IL_7SYJ_0581/2/1235:1236,
1/2/1521:1523
Minor groove platform
Not in a motif group
geometric
IL_7A0S_028
IL_42622.4
IL_7SYJ_0591/2/1268:1273,
1/2/1510:1514
No text annotation
Not in a motif group
IL_7SYJ_0601/2/1325:1327,
1/2/1502:1503
Single bulged U
Not in a motif group
geometric
IL_4V9F_107
IL_83039.16
IL_7SYJ_0611/2/1329:1336,
1/2/1491:1500
No text annotation
Not in a motif group
IL_7SYJ_0621/2/1337:1338,
1/2/1488:1490
Single bulged A
Not in a motif group
geometric
IL_4WF9_006
IL_37497.6
IL_7SYJ_0631/2/1338:1340,
1/2/1487:1488
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_76488.4
IL_7SYJ_0641/2/1347:1349,
1/2/1380:1382
Isolated cWH basepair
Not in a motif group
geometric
IL_6RA4_002
IL_70707.2
IL_7SYJ_0651/2/1363:1365,
1/2/1374:1375
Minor groove platform
Not in a motif group
geometric
IL_6DLR_003
IL_42622.4
IL_7SYJ_0661/2/1395:1399,
1/2/1447:1450
No text annotation
Not in a motif group
homologous
IL_8C3A_461
IL_67743.1
IL_7SYJ_0671/2/1402:1406,
1/2/1440:1444
No text annotation
Not in a motif group
IL_7SYJ_0681/2/1412:1413,
1/2/1427:1429
Single bulged G
Not in a motif group
geometric
IL_2IZN_001
IL_00225.3
IL_7SYJ_0691/2/1537:1539,
1/2/1594:1596
No text annotation
Not in a motif group
geometric
IL_2O3Y_001
IL_86319.2
IL_7SYJ_0701/2/1550:1558,
1/2/1577:1582
No text annotation
Not in a motif group
geometric
IL_4LFB_052
IL_84205.1
IL_7SYJ_0711/2/1560:1563,
1/2/1572:1575
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1D4R_001
IL_30621.4
IL_7SYJ_0721/2/1604:1610,
1/2/1629:1635
No text annotation
Not in a motif group
IL_7SYJ_0731/2/1702:1708,
1/2/1826:1833
No text annotation
Not in a motif group
IL_7SYJ_0741/2/1708:1712,
1/2/1821:1826
No text annotation
Not in a motif group
IL_7SYJ_0751/2/1713:1717,
1/2/1816:1820
No text annotation
Not in a motif group
IL_7SYJ_0761/2/1717:1720,
1/2/1813:1816
Double sheared
Not in a motif group
geometric
IL_5AOX_003
IL_09705.10
IL_7SYJ_0771/2/1720:1723,
1/2/1811:1813
No text annotation
Not in a motif group
geometric
IL_7A0S_031
IL_86319.2
IL_7SYJ_0781/2/1729:1731,
1/2/1803:1805
No text annotation
Not in a motif group
geometric
IL_6E7L_003
IL_86319.2
IL_7SYJ_0791/2/1733:1736,
1/2/1798:1801
Double sheared
Not in a motif group
geometric
IL_4V88_471
IL_09705.10
IL_7SYJ_0801/2/1739:1741,
1/2/1793:1795
UU cWW water inserted
Not in a motif group
geometric
IL_4E48_002
IL_86319.2
IL_7SYJ_0811/2/1742:1746,
1/2/1788:1792
Triple sheared
Not in a motif group
geometric
IL_7RQB_075
IL_56467.8
IL_7SYJ_0821/2/1750:1751,
1/2/1782:1784
No text annotation
Not in a motif group
IL_7SYJ_0831/2/1751:1753,
1/2/1780:1782
No text annotation
Not in a motif group
IL_7SYJ_0841/2/1753:1754,
1/2/1778:1780
No text annotation
Not in a motif group
IL_7SYJ_0851/z/135:138,
1/z/286:289
No text annotation
Not in a motif group
IL_7SYJ_0861/z/149:150,
1/z/242:244
No text annotation
Not in a motif group
IL_7SYJ_0871/z/255:261,
1/z/272:277
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_7SYJ_011No text annotation
IL_7SYJ_015No text annotation
IL_7SYJ_035No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7SYJ_0011/2/40:41,
1/2/481:487,
1/2/512:514
No text annotation
Not in a motif group
J3_7SYJ_0021/2/682:684,
1/2/918:922,
1/2/1022:1023
No text annotation
Not in a motif group
J3_7SYJ_0031/2/816:819,
1/2/829:831,
1/2/843:848
No text annotation
Not in a motif group
J3_7SYJ_0041/2/938:941,
1/2/985:993,
1/2/1000:1004
No text annotation
Not in a motif group
J3_7SYJ_0051/2/1094:1097,
1/2/1135:1140,
1/2/1147:1151
No text annotation
Not in a motif group
J3_7SYJ_0061/2/1218:1222,
1/2/1644:1651,
1/2/1673:1680
No text annotation
Not in a motif group
J3_7SYJ_0071/2/1225:1228,
1/2/1530:1532,
1/2/1638:1641
No text annotation
Not in a motif group
homologous
J3_8C3A_039
NA
J3_7SYJ_0081/2/1237:1245,
1/2/1254:1266,
1/2/1516:1520
No text annotation
Not in a motif group
J3_7SYJ_0091/2/1273:1277,
1/2/1320:1324,
1/2/1504:1510
No text annotation
Not in a motif group
J3_7SYJ_0101/2/1340:1347,
1/2/1382:1389,
1/2/1481:1487
No text annotation
Not in a motif group
J3_7SYJ_0111/2/1350:1351,
1/2/1360:1363,
1/2/1375:1379
No text annotation
Not in a motif group
J3_7SYJ_0121/2/1532:1536,
1/2/1597:1604,
1/2/1635:1638
No text annotation
Not in a motif group
homologous
J3_8C3A_044
NA
J3_7SYJ_0131/z/133:135,
1/z/289:303,
1/z/314:315
No text annotation
Not in a motif group

Problematic loops

No problematic loops


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