JAR3D Query RF00011-CCF-3.98 completed
Run on Motif Atlas Version 3.98 using the CaCoFold secondary structure. Run with the Rfam secondary structure.

RF00011 Bacterial RNase P class B

Input Summary

      0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222233333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333334444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555566666
0000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000
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.......................((((((((............................................)).....))))))...................((((.((........))))))...........((((((............)))))).((..((((..............))))..))..(((..((((......((.((...(((............)))..)))).....))))........)...........((...((((((.((...................................................))).)))))......)).........)).............(((.............)))...(.(.(((((..(.((...........))..).)))))))(.(((((.........................)))..)))...................(((((..(.((((....................................)))))))))).(....((.......))..)...........................
>U64877.1_1-316
---------------------------------------------------------------------------------------GAGGAAAGUCCGGG-CUAGCACAC-ACCUUAUGG-GUGUGUAGUGUUUGU-GCUAAGG--GAAAUCAUAACCUUAGGUA--UGUUG----UAUA-----AACA--UAACGGCAAACUA-GUUA-UA-GCUAAGGUG-UUUC------ACUACGUUAUAACUUAAA-UUAAA--GUGCCACAGAGACGAA-UCUAUU-UA-----------------------GAAA------------------------UAA-AUAGAGUGAAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAAUU---AGGUAGGGGCAC-A-UGAUG--UGUAG-------CAAUACAA-CAUCAUGC-AAGAU----------------UUGA-----AUC--UUGAGAUUAAUAGUCACAA---AAGAA----------------------GAAA-----------------------UUCUU---UACAGAACGCGGCUUA----------------------------
>M19023.1_1-411
AUGCAGGAAAUGC-GGGUAGCCGCUGCCGCAAUCGUCUC----------------------------------GGCGAUUGGCGGUAGAGGAAAGUCCAGG-CUCGCCCAA-GC-UGAGAU-GCUUGGAGUGUUCGU-ACCUGGC--GCAA------GCCAGGGCAA-GUGAGGC--GCAA--GCCUCGC--UGACGGC---GUG-GAAA-GG-GCU--CUC--UCU-------GAG--GCCCGAGUACGC--UGAAA--GUGCCACAGAAACGUAGCUUUUC-UG-----------------------GCGA------------------------CAG-AAAAGAUGGAACG-CGGUAAACCCUGCGAGCGAGAAACCCAAAUU---UGGUAGGGGAAC-C-GUCCU--GAAGGAAUC---AAACGGAA-GGGACGGA-UGGUAUCUU------------CGGA-----UGC--CAUAGAUAGAUGGCUACCG---CUCUU--GGUGCGAGG-----------GAUA------CGUCCCGCUUGCAGCACGGGAG--AGACAGAACCUGGCUUAUAGCA----------UUUCCUGCUGGAU
>BA000004.3_1843310-1843721
AUCAUAACCGUUC-AGGUAACCGCUGCAUCGCA----------------------------------------UGCG-----AUGUAGAGGAAAGUCCAUG-CUCGCACAG-GC-UGAGAU-GCUUGUAGUGUUCGU-GCCUAGC--GAAGUCAUAAGCUAGGGUA--GUCUGGUU-CUUAGAACUGGGC--UAACGGC--AAGG-UAAG-CA-CCUACGUUCAUCAU-----GAAUAUGGUGUGAUGCCUU-UGAAA--GUGCCACAGUGACGUAGUCCGUU-UG-----------------------GAAA------------------------CAG-ACGGAGUGGAACG-AGGUAAACCCCUCGAGCGAGAAACCCAAAAAU--UGGUAGGGGAAC-C-UUCUU--GAAGGAAAU---GAACGGA--GAGAAGGA-CGGAAGU--------------UUUA----CUUC--UGUAGACAGAUGGUUACCA---CCGGA--G-UACGAGG-----------UUCA-------UCACCGUUUGUAGUACGAAGG---AACAGAACAUGGCUUAUCGAA------------CGGGAAUGAGA
>M19022.1_1-408
UGAAAUAACGUUC-AGGUAAUCGCUGCAUCA------------------------------------------UUUG-----AUGUAGAGGAAAGUCCAUG-CUCGCACGGUGC-UGAGAU-GCCCGUAGUGUUCGU-GCCUAGU--GAAAAAAUAAGCUAGGGCA--GCUUGGC--UUAU-AGCUUAGC--UGACGGC--GGGA-AAAACCA-CCUAAGUC--UUUG------GAUAUGGUCGAGUAUCCU--GAAA--GUGCCACAGUGACGAAGCUUUGC-UG-----------------------GAAA------------------------CAG-CAAAGGUGGAACG-CGGUAAACCCCACGAGCGAGAAACCCAAACAA--UGGUAGGGGAAC-U-GUCUC--AAAGGAAUC---UAACGGA--GAGACGGA-CGGUUACAU------------GCGU-----AAU--CGUAGAUAGAUGAUUACCG---CCUGA--G-UACGAGAU----------UAAA---------AUCGUUUGCAGUACAAAGG---UACAAAACAUGGCUUUACGAA----------CGUUGUUGAAACA
>M19021.1_1-417
GUUAAUCAUGCUC-GGGUAAUCGCUGCGGCCGGUU--------------------------------------UCGG-----CCGUAGAGGAAAGUCCAUG-CUCGCACGGUGC-UGAGAU-GCCCGUAGUGUUCGU-GCCUAGC--GAAUCCAUAAGCUAGGGCA--GCCUGGC--UUCG--GCUGGGC--UGACGGC--GGGG-AAAG-AA-CCUACGUCCGGCUG-----GGAUAUGGUUCGAUUACCC-UGAAA--GUGCCACAGUGACGGAGCUCUAA-GG-----------------------GAAA------------------------CCU-UAGAGGUGGAACG-CGGUAAACCCCACGAGCGAGAAACCCAAAUGA--UGGUAGGGGCAC-C-UUCCC--GAAGGAAAU---GAACGGA--GGGAAGGA-CAGGCGGCGCA----------UGCA-----GCC--UGUAGAUAGAUGAUUACCG---CCGGA--G-UACGAGGCG---------CAAA---------GCCGCUUGCAGUACGAAGG---UACAGAACAUGGCUUAUAGAG----------CAUGAUUAACGUG
>M13175.1_1-401
GUUCUUAACGUUC-GGGUAAUCGCUGCAGAU------------------------------------------CUUG--AAUCUGUAGAGGAAAGUCCAUG-CUCGCACGGUGC-UGAGAU-GCCCGUAGUGUUCGU-GCCUAGC--GAAGUCAUAAGCUAGGGCA--GUCU-----UUAG-----AGGC--UGACGGC--AGGA-AAAA-AG-CCUACGUC--UUCG------GAUAUGGCUGAGUAUCCU-UGAAA--GUGCCACAGUGACGAAGUCUCAC-UA-----------------------GAAA------------------------UGG-UGAGAGUGGAACG-CGGUAAACCCCUCGAGCGAGAAACCCAAAUUU--UGGUAGGGGAAC-C-UUCUU--AACGGAAUU---CAACGGA--GAGAAGGA-CAGAA----------------UGCU-----UUC--UGUAGAUAGAUGAUUGCCG---CCUGA--G-UACGAGGUG---------AUGA---------GCCGUUUGCAGUACGAUGG---AACAAAACAUGGCUUACAGAA----------CGUUAGACCACUU
>U64878.1_1-308
---------------------------------------------------------------------------------------GAGGAAAGUCCGGG-CUCGCACAU-UC-UGUGAU-GAAUGUAGUGUUUGU-GCUGGAU--GAAACGAUAAAUCCAGGCA--GC-------GUAA-------GC--UGACGGC---UGG-AGAA-GG-CCUGUGGU--GAAA------GCUAUGGCGGACUCCUU--UAAAA--GUGCCACAGAAACGAG-CUUUUC-GG-----------------------GAAA------------------------CCG-GAAAGAUGGAACG--GGUAAACCCCGCAAGCGAGAAACCCAAAUU---UGGUAGGGGAAU-C-UAAUCA-CGGCAAAAC---GAAGCCAGUGAUCGGAA-CGUG-----------------GAAA------CA--CGUAGAUAAAUGACUGCCA---CUUUC----------------------GCAA-----------------------GAGAG---UACAAAACACGGCUUA----------------------------
>U64887.1_1-331
---------------------------------------------------------------------------------------GAGGAAAGUCCGGG-CUCGCACAA-GC-UGAGAU-GCUUGUAGUGUUCGU-GCUUAGC--GAAAUCAUAAGCUAAGGUA--CUCU------UUU-----AGAG--UAACGGC--AGGA-AAAA-UG-ACUAAGGU--UUCG------ACUAUGUCAAAGUAUCCU-UGAAA--GUGCCACAGUGACGAAGCGAUGU-GG-----------------------GAAA------------------------CUC-CAUCGGUGGAACG-CGGUAAACCCCUCGAGCGAGCAACCCAAACAA--UGGUAGGGGCGC-U-CUUCU--AAAGGAAAU---GAACGAGU-AGAAGAGG-CAGAG----------------UUUA-----CUC--UGCAGAUAGAUGAUGACCG---UCACC--A-AUUUUUCCU---------GAAG-------------------AAUUGGUGA---UACAGAACGCGGCUUAU---------------------------
>AF056391.1_4-345
---------------------------------------------------------------------------------------GAGGAAAGUCCGGG-CUCGCACAU-CC-UGCGAU-GGAUGUAGUGUUCGU-GCCCGUU----CGUAAU--GGCGGGGCA--GUCAGCUU-UUUA---GCAGAU--UGACGGC--GGGG-AAAG-CAUCCUACAGCCAACUU-----GGCCAUGGUGCAAGUACCC-UGAAA--GUGG-AUAGAGACGAG-UCGUCG-GG-----------------------GAAA------------------------CUC-GACGAGUGGAACG-A-CUAAACCCCACGAGCGAGCAACUCAGUGU-----GUAGAGGCAC-C-UGGCU--GAGAGAAAU---GAAUCAA--UGCCGGGA-CGAUCGA--------------CAUA----UGAU--CGUAGAAAAAUGAUUGCCC---CUUCU--G-UGGGAGGCUGGGAAG---CCUA----------------GAACCACAUUGG---AACAGAAUCCGGCUUA----------------------------
>U64882.1_1-342
---------------------------------------------------------------------------------------GAGGAAAGUCCGGG-CUCGCACAU-CC-UGCGAU-GGAUGUAGUGUUCGU-GCCCGUU----CGUAAU--GGCGGGGCA--GUCAGCUU-UUUA---GCAGAC--UGACGGC--GGGG-AAAG-CAUCCUACAGCCAUCUU-----GGCCAUGGUGCAAAUACCC-UGAAA--GUGG-AUAGAGACGAG-UCGUCG-GG-----------------------GAAA------------------------CUC-GACGAGUGGAACG-A-CUAAACCCCACGAGCGAGCAACUCAGUGU-----GUAGAGGCAC-C-UGGCU--GAGAGAAAU---GAAUCGA--CGCUGGGA-CGAUCGC--------------CAUA----UGAU--CGUAGAAAAAUGAUUGCCC---CUUCU--G-UGGGAGGCUGGGAAG---CCAA----------------GAACCACAUUGG---GACAGAACCCGGCUUA----------------------------
>U64883.1_1-328
---------------------------------------------------------------------------------------GAGGAAAGUCCGGG-CCCGCGCAA-GC-UGAGAU-GCUUGUAGUGUUCGU-GCUAAGC-----CCAAUAAGCUUAGGGG--CCGU-----GUAA-----ACGG--CUACGGC--GGCC-AAAC-GC-GCUAAGGC--GUCA------GCUAUGCGCUAGUAGGUC-UGAAAA-GUGCCACAGUGACGAAACGAUCA-GG-----------------------GAAA------------------------CCU-GAGCGGUGGAACG--GGUAAACCCCGCGAGCGAGUAACCCAAACUUU-UGGUAGGGGCGU-U-UUGCC--AAGCAAAUU---GAAGCGAC-GGCAAUAC-AGCG-----------------GUAA------CG--CUGAGAUAGAUGAUGACUGAA-GGAGC--U-UGUGC-------------CUGA-------------------ACAAGUUCU-GGAACAACACACGGCUUAU---------------------------
>D13066.1_58-413
GAGAU--UUUAUU-GGUCAAUCGCUGUAUUU------------------------------------------GAAA-AAGAAUAUAGAGGAAACUCCACG-CUUACACAA-UC-UGUGAU-GAUUGUAGUGUUUAU-GCUAAAU--GAAAAAAUAAAUUUAGGCA--GUAA-----UUAA-----UUAC--UGACGGC--AUAA-CUA---A-CCUAAGGC--UUU-------GCUAUGGU--GAUGUUAU---AAA--GUGCCACAGAGACGAAU---AAA-GA-----------------------GAAA------------------------UCU-U-GAAAUGGAACG-CGGUAAACCCCAUAAGUAAGAAACUCAAAUUU--UGGUAGAGGAAU-C-UGAUU--AAGAAAAUA---AGAAUCAA-AAUCAGAA-GUUA-----------------UUAU------UA--ACUAGAUAGAUGAUUGACG---CU-------------------------GAAA--------------------------AG---UACAAAACGUGGGUUAUAAAU-----------AAAAUCUCAUCA
>U41756.1_1-291
-------AGCAUU-GGCUAACAGCUGCUU--------------------------------------------GAAA-----GAGUAGAGGAAAGUCCACG-CUAGCACAA-CC-UGCGAU-GGUUGUAGUGAUCAU-GCUAGGC-----CCAAUAAGCCUAGGC-------------UUA------------GACGAC---------------------------------------------------------UA--GUGCCACAGAGACGAGA---------------------------------AUU---------------------------------GUGAAACG-CGGUAAACUCCAUGAGUUAGAAACCCAAAUAU--UGGUAGGGGAAC-U-UUUCA--ACGGAAAUU---GAACCAA--AGAAAAGA-GUUGA----------------UUAA-----UCA--ACUAGAUAAAUUGUUAGCA---CCU------------------------GAGA-------------------------GGG---UACAAAACGUGGCUUAUAAAU-----GCUAAAACACUUGCGCGA
>X69983.1_47-447
--------GCACA-AGUCAAUCGCAGGUAUAAUCAAAAUAUUAUUUUAUAAAUAUAAAUUAUAUUUUGA----UUAA-----UAUUUGAGGAAAGUCCGCG-CUAGCACUA-CC-UGUGAU-GGUAGUAGUGUUCAU-GUUGGGU-----CUAAUAAACCCAAGC-------------UUA------------GACGAC---------------------------------------------------------AA--GUGCCACAGAGACGAG-CUUAUU-UAUUAAAUUCUUCUUUUUCUAUAUUGAGA-----AUUACAAUUUUUUUCUUAAUAA-AUAAGGUGAAACG-CGGUAAACUCCAUGAGCUAGAAACCUAAAUUU--UGGUAAGGGAGC-C-CAAUU--UGAAGAAAA---AAAACUUC-GAUUGGGA-AGUUUUUUGAUAAGGUUAUUAUUAAAAGAAAAA--CUUAGAUAAAUGAUUGACU--------------------------------GA-------------------------------UACAGAACGCGGCUUAUUAGU------GCAAAAACAGCGUAAAA
>X69982.1_45-449
-------UGCACA-AGUCAAUUGCAGAUAUAAUUAAAUAUAAUAAUUUUUUUAUAAUUGUUAUAUUUAACAAAUUUA-----UAUUUGAGGAAAGUCCGCG-CUAGCACUA-CC-UGAGAU-GGUAGUAGUGUUCAU-GUUGGAU-----CUAAUAAAUCCAAGC------------UUUA------------GACGAC---------------------------------------------------------CA--GUGCCACAGAGACGAG-UUUAUU-UAUUAAUUUGUUUAUAUU-------AAAAAAUAGUUUAGAAUUUUUAAAUUAAUAA-AUAAGGUGAAACG-CGGUAAACUCCAUGAGCUAGAAACCUAAAUUU--UGGUAAGGGAGC-C-CAAUU--UCGGGAAAC---AAACUUU--AAUUGGGA-AGUUCUAUUAUAAUAUU----UUUA-UAAAGAA--CUUAGAUAAAUGAUUGAUU--------------------------------AA-------------------------------UACAGAACGCGGCUUAUUAGUGCAAAAAAAACAGCGAAUCUGAA
>AF151218.1_1-397
UGA----UAUUUC-GGGUAAUCGCUAUAU--------------------------------------------U--------AUAUAGAGGAAAGUCCAUG-CUCACACAG-UC-UGAGAU-GAUUGUAGUGUUCGU-GCUUGAU--GAAACAAUAAAUCAAGGCA-----------UUAA---UU------UGACGGC--AAUG-AAAU-AU-CCUAAGUC--UUUC------GAUAUGGAUAGAGUAAUU-UGAAA--GUGCCACAGUGACGUAGCUUUUA-UA-----------------------GAAA------------------------UAU-AAAAGGUGGAACG-CGGUAAACCCCUCGAGUGAGCAAUCCAAAUU---UGGUAGGAGCAC-U-UGUUU--AACGGAAUU---CAACGUAU-AAACGAGA-CACACUUCGC-----------GAAA-UGAAGUG-GUGUAGACAGAUGGUUAUCA---CCUGA--G-UACCAGUGUG--------ACUA------GUGCACGUGAUGAGUACGAUGG---AACAGAACAUGGCUUAUAGAA---------AUAUCACUACUAGU
>U64885.1_1-349
---------------------------------------------------------------------------------------GAGGAAAGUCCGGG-CUCACACAG-UC-UGAGAU-GAUUGUAGUGUUCGU-GCUUGAU--GAAACAAUAAAUCAAGGCA-----------UUAA---UU------UGACGGC--AAUG-AAAU-AU-CCUAAGUC--UUUC------GAUAUGGAUAGAGUAAUU-UGAAA--GUGCCACAGUGACGUAGCUUUUA-UA-----------------------GAAA------------------------UAU-AAAAGGUGGAACG-CGGUAAACCCCUCGAGUGAGCAAUCCAAAUU---UGGUAGGAGCAC-U-UGUUU--AACGGAAUU---CAACGUAU-AAACGAGA-CACACUUCGC-----------GAAA-UGAAGUG-GUGUAGACAGAUGGUUAUCA---CCUGA--G-UACCAGUGUG--------ACUA------GUGCACGUGAUGAGUACGAUGG---AACAGAACGCGGCUUAU---------------------------
>U64886.1_1-331
---------------------------------------------------------------------------------------GAGGAAAGUCCGGG-CUCGCACAG-GC-UGUGAU-GCCUGUAGUGUUCGU-GCUUAGC--GAAACAAUAAGCUAAGGUG--CUCU------AUU-----AGAG--UAACGGC--AGGA-AAAC-AA-GCUAAGGUU-UUUA------ACUAUGCUUAAGUAUCCU-UGAAA--GUGCCACAGUGACGAAGCGGAUA-GG-----------------------GAAA------------------------CUU-AUUCGGUGGAACG-CGGUAAACCCCUCGAGCGAGCAACCCAAACAA--UGGUAGGGGCGC-U-UUUUG--UUGGGAAUUAA-GAACGAGA-CAAAAAGG-CAG-G----------------UUAA-------C--UGCAGAUAGAUGGUUACCA---CAUUG--C-UUUU--------------UCUC--------------CCUGGAAAGUAGUG---UACAGAACACGGCUUAU---------------------------
>AF295988.1_1-331
---------------------------------------------------------------------------------------GAGGAAAGUCCGGG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGU--GAAUCAAUAAGCCUAGGGA--CAUCU----UUUU-----GAUG--UUACGGC--GGGC-AAAA-AG-GCUAAGUCU-UUAC-----GGAUAUGUCUGAAUAGCCC-UGAAA--GUGCCACAGUGACGUAGUUCUUG-GG-----------------------GAAA------------------------CCU-AAGAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUA--GUUGGAAUC---CGAACAAUCUAUCCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAGA--U-AAGA--------------CCUA-------------------GUUAUCUCU-GGAACAAAACACGGCUUAU---------------------------
>AF295989.1_1-302
---------------------------------------------------------------------------------------GAGGAAAGUCCGGGACUCGCACCA-CC-UGAGAU-GGUGGUAGUGUUUGU-GCUCAGU--GAAUCAAUAAGCUGAGGUA--UAGA-----GGCA-----UCUA--UAACGGC--AGAC-CAAA-AU-CCUAAGGG--AA--------ACUAUGGAU--GGAGGCUAUAAAA--GUGCCACAGUGACGAAGUUCCUA-GG-----------------------GAAA------------------------CCU-AGGAAGUGGAACG-AGGUAAACCCCAUAAGCGAGAAACCCAAAAU---UGGUAGGGGAAC-U-CACAC--UACUGAAAU---GAAGGUA--ACGUGAGA-CGUUU----------------UUA------AAA--CGUAGAUAAAUGAUUAUC-------------------------------GCAA-------------------------------GUCANAACACGGCUUAU---------------------------
>AJ511701.1_1-371
GUGCA--AUUUUU-GGAUAAUCGCAUGAAAA------------------------------------------GUUA--UUUUUUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGC--GAAACAAUAAGCCUAGGGA--CGGA-----UUAU-----UCCG--UUACGGC--GGAU-GAAA-CA-GCUAAGUC--UCUU------GAUAUGCUGGAGUAGGCC-UGAAA--GUGCCACAGUGACGUAGUUUUUG-UG-----------------------GAAA------------------------CAC-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAU-G-GAAUG--CGUGGAAAC---GAACAUUG-CAUUCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAAA--U-GGUA--------------CCUA-------------------GUCAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AF295987.1_1-332
---------------------------------------------------------------------------------------GAGGAAAGUCCGGG-CUAGCACCG-GC-UGUGAU-GCUGGUAGUGUUUGU-GCUAGGC--GAACAAAUAAGCCUAGGGA--UGUGU----UUGA-----CACA--UUACGGC--GAGU-GAAA-AG-GCUAAGUC--CUUG------GAUAUGCCAGAGUAGCUC-UGAAA--GUGCCACAGUGACGAAGUUUUUA-UG-----------------------GAAA------------------------CGU-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUA--GUUGGAAAC---GAACAAGC-UAUCCUGA-CUGUU----------------GACA-----AAC--AGUAGACAGAUGAUUAUCGAA-GGAGA--U-AAUA--------------CCUA-------------------GUUAUUUCU-GGAACAAAACACGGCUUAU---------------------------
>AJ511695.1_1-374
GUGCA--AUUUUU-GGAUAAUCGCGUAGUAUU-----------------------------------------GCAA----UACUAUGAGGAAAGUCCAUG-CUAGCACCG-GC-UGUGAU-GCUGGUAGUGUUUGU-GCUAGGC--GAACAAAUAAGCCUAGGGA--UGUGU----UUGA-----CACA--UUACGGC--GAGU-GAAA-AG-GCUAAGUC--CUU-------GAUAUGCCAGAGUAGCUC-UGAAA--GUGCCACAGUGACGAAGUUUUUA-UG-----------------------GAAA------------------------CGU-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUA--GUUGGAAAC---GAACAAGC-UAUCCUGA-CUGUU----------------GACA-----AAC--AGUAGACAGAUGAUUAUCGAA-GGAGA--U-AAUA--------------CCUA-------------------GUUAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511705.1_6-366
-------AUUUUU-GGAUAAUCGCAUGGG--------------------------------------------AUAA------CCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGAC--GAAAAAAUAAGUCUAGGGA--CAUG-----GUGA-----CAUG--UUACGGC--GGAU-AAAA-UG-ACUAAGUC--UUCU------GAUAGGUCAGAGUUAUCC-UGAAA--GUGCCACAGUGACGUAGUUUUUA-UG-----------------------GAAA------------------------CGU-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAU-G-GGAAA--GCUGGAAAC---GAACAGUC-UUUCCUGA-CUGC-----------------AUAA------GC--AGUAGACAGAUGAUUAUCG---AAGGC--G-GCAGAGC-----------CUAG-------------------UGUCGCUGG---AACAAAACAUGGCUUAUAGAA-----------------------
>AM263198.1_1937764-1937383
-------ACGUUC-GGAUAAUCGCUGUUUUCUU----------------------------------------UUGA-----AAACAGAGGAAAGUCCAUG-CUCGCACGGUGC-UGUGAU-GCCCGUAGUGAUCGU-GCCUGGU--CAAACAAUAAGCCAGGGCAUUCCGG-----AUUU-----CCGGUUUGACGGC--AGGU-GAAU-GA-CCUAAGUC--UUCG------GAUAUGGUCUUAUAACCU-UGAAG--GUGCCACAGUGACGAAGUUCCGG-CA-----------------------GAAA------------------------UGCUCGGAAGUGGAACG-AGGUAAACCCCACGAGCGAGAAACUCAAACUUA-UGGUAGGGGCAC-U-UUUCC--CGAGGAAUCA--AGAACGAG-GGACGAGG-UACGAAUGA------------AUUU-----UCG--UGCAGAUAGAUGGUUAUCU---CUUUG--C-UAUU--------------ACCC--------------UGUAUAUAGUAAAG---AACAGAACAUGGCUUACAGAG-----------------------
>AJ511677.1_6-374
-------AUUUUU-GGAUAAUCGCGUGGUAUUU----------------------------------------UAAU-----ACCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGU--GAAUCAAUAAGCCUAGGGA--CAUCU----UUUU-----GAUG--UUACGGC--GGGC-AAAA-AG-GCUAAGUCU-UUAC-----GGAUAUGUCUGAAUAGCCC-UGAAA--GUGCCACAGUGACGUAGUUCUUG-GG-----------------------GAAA------------------------CCU-AAGAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUA--GUUGGAAUCC--GAACAAUC-UAUCCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAGA--U-AAGA--------------CCUA-------------------GUUAUCUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511678.1_6-380
-------AUUUUU-GGAUAAUCGCGUGGUAAAUAUUGCAA---------------------------------UUUU-----AUCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGAC--AAAAAAAUAAGUCUAGGGA--UGUGC----UUUG-----CGCA--UUACGGC--GGAU-AAAA-UG-GCUAAGUC--UUU-------GAUAGGCCGGAGUAAUUC-UGAAA--GUGCCACAGUGACGUAGCUUUUA-UG-----------------------GAAA------------------------CAU-AAAAGGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GAAAA--GCUGGAAAAA--GAACGGUC-UUUUCUGA-CUGC-----------------AUAA------GC--AGUAGACAGAUGAUUAUCAAA-AAAGG--U-GGUA--------------CCUA-------------------GUCACCUUU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511688.1_6-371
-------AUUUUU-GGAUAAUCGCGUGGUAUUC----------------------------------------UAAU-----ACCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGU--GAAUUAAUAAGCCUAGGGA--CAUC-----UUGU-----GAUG--UUACGGC--GAGU-GAAA-AG-GCUAAGUC--UUU-------GAUAUGCCUAAAUAGCUC-UGAAAA-GUGCCACAGUGACGUAGUUCUUG-AG-----------------------GAAA------------------------CUC-GAGAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAC-G-GGAUA--GUAGGAAUCC--GAACGAUC-UAUCCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAGA--U-AAGA--------------CCUA-------------------GUUAUCUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511718.1_6-377
-------AUUUUU-GGAUAAUCGCAUGGUUGCAAGUAA-----------------------------------GUCU-----UCCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGC--GAAUCAAUAAGCCUAGGGA--CUUGA----UUUU-----CAAG--UUACGGC--GAGC-GAAC-UG-GCUAAGUC--UUCG------GAUAGGUUUUAGUAGCUC-UGAAA--GUGCCACAGUGACGGAGUUUUUA-GG-----------------------GAAA------------------------CCU-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUG--GCCGGAAAC---GAACGGAC-CAUUCUGA-CUGC------------------UAU------GC--AGUAGACAGAUGAUUAUCGAA-GGAAG--U-GGUA--------------CCUA-------------------GUCACUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>BA000028.3_1789668-1789281
-------UUGCUC-AUGUAAUCGCUGCAUCCUU----------------------------------------UAGG-----AUGUAGAGGAAAGUCCAUG-CUCACACGA-GC-UGCGAU-GCUCGUAGUGUUCGU-GCUUGAC--GAAGUCAUAAGUCAAGGUA--GCUU-------UA-----AUGC--UAACGGC--AGAUAUGAU-AU-CCUAAGUUA-UCUUAAAGAUAAUAUGGAUUCAUU--CU-UGAAA--GUGCCACAGUGACGUAGCUAGAU-CG-----------------------GAAA------------------------CUU-UCUAGGUGGAACG-CGGUAAACCCCACGAGUGAGCAACCCAAAUUAA-UGGUAGGGGCAU-C-CUUUUAGUAGGGAAUU---AGAACCGA-AUAAGGGA-CAGAUU---------------AAUG-----AUC--UGUAGAUAGAUGAUUACGA---CCGGC--G-UACAAGG-----------UUGA-------CCACCGUUUGCAGUACAAUGG---UACAGAACAUGGCUUAUCGAG-----------------------
>AAXV01000008.1_62968-62589
-------AAAUUC-UGGUAAUCGCUGCGGCGCUA---------------------------------------GACG-----UCGUAGAGGAAAGUCCAUG-CUCACACGGUAC-UGAGAU-GUCCGUAGUGUUCGU-GCUUACU--GAAAAAAUAAGGUAAGGCA--GCUG-----UUCA------GGC--UGACGGC--GGAA-GGAA-AA-CCUAAGUC--CUUG------GAUAUGGUUGACACUUCC-UGAAA--GUGCCACAGUGACGAAGCUUGCU-UG-----------------------GAAA------------------------CAU-GCAAGGUGGAACG-AGGUAAACCCCACGAGUGAGAAACCCAAAUUA--UGGUAGGGGCAC-U-CUCUU--GAAGGAAUU---GAACGGA--UAGAGGGA-CGGAG----------------CUUG-----CUC--UGUAGAUAGAUGAUUACUA---CCUGGUCG-UACGAGGCGCAAGCUGU-UUGA-------------------GUACUCAGG---AACAAAACAUGGCUUAUGGAA-----------------------
>AJ511729.1_6-371
-------AUUUUU-GGAUAAUCGCGUGAGAAUAUUU-------------------------------------UAUU-----UUCAUGAGGAAAGUCCAUG-CUAGCACGG-GC-UGUGAU-GCCCGUAGUGUUUGU-GCUAGGU--GAAACAAUAAGCCUAGGGA--CGAG-------AA-----AUCG--UUACGGC--GGAC-GAAA-CA-GCUACGUC--UCUG------GAUAUGCUGGAAUAGUCC-UGAAA--GUGCCACAGUGACGUAGUUUUUG-CA-----------------------GAAA------------------------CGC-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAC-G-GAAUG--CGUGGAAAC---GAACAUAG-CAUUCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAAA--U-GAUA--------------CCUA-------------------GUUAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AP008934.1_1342447-1342821
-------UGUUUC-GGGUAAUCGCUAUAG--------------------------------------------CG-------AUAUAGAGGAAAGUCCAUG-CUCACACAA-UC-UGAGAU-GAUUGUAGUGUUCGU-GCUUGAU--GAAACAAUAAGUCAAGGCA-----------UUAA---GU------UGACGGC--AACG-AAAU-AA-CCUAAGUC--CUUA------GAUAAGGUUAGAUUAGUU-UGAAA--GUGCCACAGUGACGGAGCUUUUG-CA-----------------------GAAA------------------------UGC-AAAAGGUGGAACG-CGGUAAACCCCUCGAGUGAGCAAUCCAAAUU---AGGUAGGAGCAC-U-UAUUU--AACGGAAUU---CAACGUAU-AUAUAAGA-CAUACUUU-------------UAAA----AGUA--UGUAGACAGAUGGUUACCA---CCUGC--G-UACG--------------AGUGUUUCUAGUACACGUUAGCAGUACAAUGG---UACAAAACAUGGCUUACAGAA-----------------------
>AJ511700.1_6-373
-------AUUUUU-GGAUAAUCGCGUGAAGAUUUGA-------------------------------------UAUU-----UUCAUGAGGAAAGUCCAUG-CUAGCACCG-GC-UGUGAU-GCUGGUAGUGUUUGU-GCUAGGC--GAAACAAUAAGCCUAGGGA--CGGA-----GCAA-----UCCG--UUACGGC--GACU-GAAA-AG-GCUAAGUC--UUUA------GAUAGGUCUGAAUAGGUC-UGAAA--GUGCCACAGUGACGUAGUUCUUC-UG-----------------------GAAA------------------------CAG-AAGAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAC-G-GAAUG--CGUGGAAAC---GAACAUAG-CAUUCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAGA--U-GGUA--------------CCUA-------------------GUCAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>CP000029.1_1061551-1061168
-------UAUUUC-GGGUAAUCGCUAUAG--------------------------------------------CA-------AUAUAGAGGAAAGUCCAUG-CUCACACAA-UC-UGAGAU-GAUUGUAGUGUUCGU-GCUUGAU--GAAACAAUAAAUCAAGGCA-----------UUAA---UU------UGACGGC--AAUG-AAAU-AA-CCUAAGUC--AUUG------GAUAUGGUUAGAAUAGUU-UGAAA--GUGCCACAGUGACGUAGCUUUUA-UA-----------------------GAAA------------------------UAU-AAAAGGUGGAACG-CGGUAAACCCCUCGAGUGAGCAAUCCAAAUU---GGGUAGGAGCAC-U-UGUUU--AGCGGAAUU---CAACGUAU-AGACGAGA-CGAUUUUUACGCGAAA-----GUAA----AAAU-AUGUAGACAGAUGGUUACCA---CCGAC--G-UACCAGU-----------GUAA---CUAGUACACAUUAUGAGUACAACGG---AACAGAACAUGGCUUACAGAA-----------------------
>ABCF01000047.1_221-605
-------ACAUUC-AGGUAAUCGCUGCAACG------------------------------------------UUUG-----UUGUAGAGGAAAGUCCAUG-CUCGCACGGUGC-UGAGAU-GCCCGUAGUGUUCGU-GCCUAGC--CAAUUCAUAAGCUAGGGCA--GUCUGC---UUCU---GCAGAU--UGACGGC--AGGG-AAAA-CA-CCUAAGUCC-UAUG------GAUAUGGUGUGAAUACCU-UGAAA--GUGCCACAGUGACGGAGUCUUGC-AA-----------------------GAAA------------------------UUG-CAAGAGUGGAACG-AGGUAAACCCCACGAGCGAGAAACCCAAAAUA--AGGUAGGGGCAC-C-UUCUU--UGAGGAACU---CAACGAG--AAGAAGGA-CGAAACA--------------GUUG-----UUU--CGUAGAUAGAUGAUUGCCG---CCGGA--G-UACG--------------AGAU----GACCCAUCGCUUGCAGUACGAAGG---AACAAAACAUGGCUUACAGAA-----------------------
>BA000026.2_520178-520527
-------UAAUGAUAGUUGGUUGCUAUAAG-------------------------------------------UUUC-----UUAUAGAGGAAAGUCCAUG-CUAGCACUA-UC-UGAGAU-GAUAGUAGUGUUUGUUGCAGGUAUAUAAAAAAUAAAACCUGGAA--GA-------UUUA----C--UC--UUACGAC--ACAA-CAA--AA-CCUAAAAUG-GUUG-----CAUUAUGGUUGAG--UUGU-AUAAA--GUGCCACAGAGACGAGC--AAAG-AA-----------------------GAAA------------------------UUC-UUGAUAUGAAACG-CGGUAAACUCCACAAGCUAGAAACCUAAAUU---UGGUAAGGGAAC-U-GGUUAU-AAAAGAAUU---CAAUUUUA-UAAACGGA-AGAAU----------------GUAU-----GUU--CUUAGAUAAAUAACCAACG----------U-CUAG--------------AUAA-------------------UAGA--------UACAGAACAUGGCUUAUUUCA-----------------------
>AJ511703.1_6-386
-------AUUUUU-GGAUAAUCGCGUGAGGAGAAUU-------------------------------------GCUU-----CUCAUGAGGAAAGUCCAUG-CUAGCACAG-GC-UGUGAU-GCCUGUAGUGUUUGU-GCUAGGC--GAAACCAUAAGCCUAGGGA--CGAG-------AA-----AUCG--UUACGGC--AGUU-GAAA-UG-GCUAAGUC--CUUG------GAUAGGCCAGAGUAGGCU-UGAAA--GUGCCACAGUGACGGAGUCUUUC-UG-----------------------GAAA------------------------CAG-AGAGAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAAUUU--UGGUCGGGGCAU-G-GAGUA--CGCGGAAAC---GAACGUAG-UAUUCUGA-CUGCUAUCAGCUAGAGC----UGUU-----AGU--GGUAGACAGAUGAUUAUCGA--AGGAA--G-UGGU--------------CCUA------------------GUCACUUCUG--GAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511697.1_6-375
-------AUUUUU-GGAUAAUCGCGUAGUAUUU----------------------------------------UGAU-----ACUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGC--GAAAAAAUAAGCCUAGGGA--CGUAUG---AUGA-----UACG--UUACGGC--AGGU-AAAA-UG-GCUAAGUC--CUU-------GAUAUGCCAUAGUAACCU-UGAAA--GUGCCACAGUGACGAAGUUUCUA-GG-----------------------GAAA------------------------CCU-AGAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAU-G-AGAUAG-CUGGAAGAC---GAACAGAACUAUCUUGA-CUGC-----------------AACA------GC--AGUAGACAGAUGAUUAUCG---AGGAA--G-UUGG--------------UUCC---------------UAGUCAACUUCUG---AACAAAACAUGGCUUAUAGAA-----------------------
>AJ511673.1_6-374
-------AUUUUU-GGAUAAUCGCGUAGUAUU-----------------------------------------GAUA----UACUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGC--GAAAAAAUAAGCCUAGGGA--GAUAG----CUAG----CUAUC--UUACGGC--AAGC-AAAA-GG-GCUAAGUC--UUUG------GAUAUGCCUGAAUAGCUU-UGAAA--GUGCCACAGUGACGUAGUUUCUA-GG-----------------------GAAA------------------------UCU-AGAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUA--GUUGGAAUGA--GAACAAUC-UAUCCUGA-CUGC------------------UUU------GC--AGUAGACAGAUGAUUAUCGAA-AGAAA--C-AAUU--------------CCUA-------------------GUUGUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AE017198.1_1120310-1119944
-------AAUUUC-GAGCGAUCGCGGUUAGCUU----------------------------------------AUGC-----UAGCUGAGGAAAGUCCACG-CACGCACAA-GC-UGAGAU-GCUUGUAGUUUUUGU-ACUCAGC-----CCAAUAAGCUGGGGAA--CUUGUU---UUUA-----CAAG--UUACGGC---GGA-AAAA-GC-ACUAAAUCA-UUUU-----UGACAUGUGUGACUAUCCU-GAAAA--GUGCCACAGUGACGAAGCAGUGA-AG-----------------------GAAA------------------------CUU-UGCUGGUGGAACG-AGGUAAACCCUGCAAGCGGGCAACCCAAAUU---UGGUAGGGGCGCUU-UCGUC--UAAGUAAAU---GAACUAAA-GACGAGGU-CAUU------------------UUU------AA--UGAAGAUAGAUGGUCGCUG---AAAAU--A-GGAA--------------UUAA--------------CCAAAUCCUAUUGG---AACAGAACGUGGCUUAUAGAG-----------------------
>AM406671.1_759051-759433
-------GUUUUC-GGAUAAUCGCGCGAUUCUUU---------------------------------------GUGA-----AUCGUGAGGAAAGUCCAUG-CUCGCGCGUUGC-UGAGAU-GCACGCAGUGAUUGU-GCUAGGU--CAAACAAUAAACCUAGGUA--GGAGC----GUCA-----UGCC--UAACGGC--UGGC-CAAA-AC-GCUAAGUC--UUUU------GAUAUGCGUGAGUAGCCUGUAAAA--GUGCCAUAGAGACGAG-UCUUAG-UG-----------------------GAAA------------------------CGC-UAAGAAUGGAACG-UGGUAAACCCCUCAAGCGAGCAACCCAAACUUA-UGGUCGGGGCAC-U-UGACU--AGCCCAAAU---GAAGGCGU-GGUCGAGG-CUGAAAUUA------------AGAA----UUUU--GGCAGACAGAUGAUUAUCGAA-GGGGA--G-AUUCAUUGA---------UAUG-------------------GAUUGAACU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>CP000002.3_2302344-2301958
-------ACGUUC-GGGUAAUCGCUGCAGAUUUU---------------------------------------ACAU-----CUGUAGAGGAAAGUCCAUG-CUCGCACGGUGC-UGAGAU-GCCCGUAGUGUUCGU-GCCUAGC--GAAGUCAUAAGCUAGGGCA--GCCUUG---CAGA-----AGGC--UGACGGC--AGGA-AAAA-AG-CCUACGUCC-UUUA----UGGAUAUGGCUGAGUAUCCU-UGAAA--GUGCCACAGUGACGAAGUCUCAC-UA-----------------------GAAA------------------------UGG-UGAGAGUGGAACG-CGGUAAACCCCUCGAGCGAGAAACCCAAAUUU--UGGUAGGGGAAC-C-UUCUG--GACGGAAAU---GAACGGA--AGGAAGGA-CAGAG----------------UUGA-----CUC--UGUAGAUAGAUGAUUACCA---CCCGA--G-UACGAGG-----------CUUA------GCAGCCGACGGCAGUACGACGG---AACAAAACAUGGCUUACAGAA-----------------------
>AM285310.1_28714-28347
-------UAACAG-AACUAGUUGCUAUUAACUUC---------------------------------------UUGU-----UAAUAGAGGAAACUCCACG-CUCGCACAA-UC-UGUGAU-GAUUGUAGUGUUUGU-GCUAAUU--UAAUUCAUAAAAUUAGGCA--UAAG-----GUUA-----CUUA--UGACGGC--UGAA-AAAA-AU-CCUACGUUA-UUAU-UAAAUAAUAUGGAGUUUUUUCUA-UAAAA--GUGCCACAGAAACGAG-UUUUUA-AA-----------------------GAAA------------------------UUU-AAAAAAUGGAACG--GGUAAACCCCACAAGCGAGAAACCUAAAUUU--UGGUAAGGGAAC-U-UCUUG--UUUUGAAGC---AGAAAAAA-CAAGGGGA-UCAAUUU--------------AAUA-----AUU--GAUAGAUAAAUAACUAGUA---UUUUA--U-UUU-----------------AA-------------------GAAAUAAAA----ACAGAACGUGGGUUAUGAUG-----------------------
>AAQK01006327.1_2314-1971
-------UUAAAU-CGACAGUCGCUGGCUACUU----------------------------------------AGAU-----AGUUAGAGGAAAGUCCAUG-CUCGCACAA-UC-UGUGAU-GAUUGUAGUGUUUGU-GCUAGAU--GAAUAAAUAAGUCUAGGCA--AGUU-------AU-----UGCU--UGACGGC--UGUU-UUGU-UU-GCUAAGGG--AA--------ACUAUGUAA-ACAAACUU-UAAAA--GUGCCACAGAGACGAA-UCUAUA-UG-----------------------GAAA------------------------CGU-AUAGGGUGGAACG--GGUAAACCCCACAAGCGAGAAACCCAAAUU---UGGUAGGGGAAC-C-GGCUG--GAAUGAAAC---GAAAGGA--AGGCUGGA-UAGCU----------------UUA------UGC--UAUAGAUAAAUGACUGUCA---CCAC-----------------------GCAA------------------------GUGG---AACAGAACAUGGCUUAUGAUU-----------------------
>AJ511676.1_6-374
-------AUUUUU-GGAUAAUCGCGUAGUAUUU----------------------------------------CAAU-----ACUAUGAGGAAAGUCCAUG-CUAGCACCG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGC--GAAAAAAUAAGCCUAGGGA--UGCA-----GAAA-----UGCA--UUACGGC--GAAA-GAAC-GA-GCUAAGUC--UUCG------GAUAUGUUUUAGUAUUUC-UGAAA--GUGCCACAGUGACGCAGUUUCUA-UG-----------------------GAAA------------------------CGU-AGGAAAUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAU-G-GAAUA--GAUUGGAAACAAGAACGAGC-UAUUCUGA-CUGU------------------UAU------AC--GGUAGACAGAUGAUUAUCGAA-GGAGA--U-GAUA--------------CCUA-------------------GUCAUCUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AACY023573249.1_971-644
-------AAUGGA-AGAUGAUCGAGCGGU-----------------------------------------------------AACGUUAGGAAAGUCCAUA-CUAACACAG-AC-UUUUAUAGUUUGUAGUGUUUGU-GUCUAAG--GAAAAAAUAACUUAGAGUA--UC-------GAAA-------GA--UAACGGC--GAAU-UCAG-UG-UCUAAGGG--AA--------ACUAUGAUA--CUAAUUU-GUAAA--GUGCCACAGUGACGAAU--CAUU-UA-----------------------GAAA------------------------UAA-AUGG-GUGAAACG-AGGUAAACCCCACAAGUUAGAAACCCAAAUUU--UGGUAGGGGAAC-A-UUGAU--UUUUGAGAA---AAA------AUUGAUGC-UACAA----------------UU-------UUG--UAGAGAUAAAUGAUCAU-A---CCUAU------------------------UU-----------------------AUAGG---AACAGAAUAUGGCUUAUGCAC-----------------------
>AAOX01000023.1_29612-29224
-------ACGUUC-GGGUAAUCGCUGCGGCAGCUU--------------------------------------GCUG-----CUGCAGAGGAAAGUCCAUG-CUCGCACGG-AC-UGAGAU-GUCCGUAGUGUUCGU-GCCUGGC--GAAGUCAUAAGCCAGGGCA--GCCGGGCG-AUUG---CGCGGC--UGACGGC--AGGG-AAAA-UG-CCUAAGUCC-UUCG-----GGAUAUGGCAUGAAUACCU-UGAAA--GUGCCACAGUGACGGAGCCUUUC-CA-----------------------GAAA------------------------UGG-GAAGGGUGGAACG-AGGUAAACCCCGCGAGCGAGAAACCCAAAUAA--UGGUAGGGGCAC-U-UUCUC--UGAGGAAAU---GAACAAG--GAGAAGGA-CAGAUU---------------UUAU-----AUC--UGUAGAUAGAUGAUUGCCG---CCUUA--G-UACG--------------AGAC-----UCAGGUCGAUUGCAGUACAAAGG---AACAAAACAUGGCUUACAGAA-----------------------
>CR936503.1_911803-912163
-------AAUCUU-GAGUAAUCGCGGUCUACAU----------------------------------------CAGU-----AGGCUGAGGAAGGUCCAUG-CCCGCACAG-GC-UGAGAU-GCUUGUAGUGUUCGU-GCCUGGC-----CCAAUAAGCCAGGGUA--CCUU--------A-----AUGG--UAACGGC---GGA-AAAA-GC-GCUAAAAC--UUCG------GUCAUGCGUUAAUAUCC--UUAAAUAGUGCCACAGUGACGGAGCGUUUG-GG-----------------------GAAA------------------------CCC-AAACGAUGGAACG-AGGUAAACCCCGCGAGCGAGUAACCCAAACUU--UGGUAGGGGCGU-C-UCAUU--UAUGGAAAU---GAACUAAA-AAUGAGAG-UUC------------------GAAA-------G--AACAGAUAGAUGAUUACUGAA-GGAGC--U-UUCU--------------UCCU-----------------GGGGAAGUUCU-GGAACAAAACAUGGCCUAUAGAG-----------------------
>AJ511707.1_6-373
-------AUUUUU-GGAUAAUCGCAUGUCGCUUUCU-------------------------------------UGGC-----GACAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGU--GAAAAAAUAAGCCUAGGGA--UGUCU----AUUU-----GACA--UUACGGC--GGAC-GAAA-GA-GCUAAGUC--UUUG------GAUAAGUUU--CUAGUCC-UGAAA--GUGCCACAGUGACGGAGUUCUUG-GG-----------------------GAAA------------------------CUC-AGGGAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAC-A-AGAUG--GCUGGAAUUC--GAACGGAC-CAUCUUGA-CUGC-----------------GCAA------GC--AGUAGACAGAUGAUUAUCGA--AGGGG--A-CAGG--------------CCUA-------------------GUGUCUCUG--GAACAAAACAUGGCUUAUAGAA-----------------------
>L43967.2_406519-406179
-------GCUGUC-GGUUAGUUGCUGCUUUAAAGAUAUA----------------------------------UUUA-----AAGUAGAGGAAAGUCCAUG-CUUGCACUU-GC-UGGAAU-GCAAGUAGUGUUUGU-GUAAAUC--AAAGCGAUAAGAUUUAGGA--UGUG-----AUAG-----C-CA--UAACGAC-----A-UAAC-UAGUCUAAGGU--UAAU------ACUAUGAUGAUGUUU----UGAAA--GUGCCACAGAGACGAGC---UUG-GU-----------------------GAAA------------------------ACC-A-GGUAUGAAACG-CGGUAAACUCCACAAGCAAGAAACCUAAAUUU--UGGUAAGGGAAU-G-UUGCU--UUAAGAACA---AAUAAUUAAAGUAAUGA-CAGCA----------------AU-------UGC--UGUAGAUAAAUAACUGACU------------------------------UUAA-------------------------------AACAGAACAUGGCUUAUUGAC-----------------------
>AJ511732.1_6-372
-------AUUUUU-GGAUAAUCGCGUGAAGAGUUCG-------------------------------------UCUU-----UUCAUGAGGAAAGUCCAUG-CUAGCACGG-GC-UGUGAU-GCCCGUAGUGUUUGU-GCUAGGU--GAAACAAUAAGCCUAGGGA--CGGA-----AGUA-----UCCG--UUACGGC--GACU-GAAA-UG-GCUAAGUC--UUU-------GAUAAGUCAAAAUAGGUC-UGAAA--GUGCCACAGUGACGUAGUUUUUG-CG-----------------------GAAA------------------------CGC-AGGAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAC-G-GAAUG--CGUGGAAAC---GAACGCAG-CAUUCUGA-CUG------------------GUAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAAA--U-GAUA--------------CCUA-------------------GUUAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511689.1_6-374
-------AUUUUU-GGAUAAUCGCAUGUCACUUUUU-------------------------------------AGUU-----GAUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGU--GAAACAAUAAGCCUAGGCA--UGUCU----AUUU-----GACA--UGACGGC--GGAC-GACG-GA-GCUAAGUU--CUUG------GAUAUGUUC--CCAGUCC-UGAAA--GUGCCACAGUGACGGAGUCCUUG-AG-----------------------GAAA------------------------CUU-AAGGAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAAUUU--UGGUCGGGGCAC-G-AGAUG--GCUGGAAUCC--GAACGGAC-CAUCUUGA-CUGC-----------------GUAA------GC--AGUAGACAGAUGAUUAUCGAA-GGAGA--C-AGCA--------------CCUA-------------------G-UGUCUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>CP000387.1_1852793-1852426
-------AUUUUU-GGAUAAUCGCGUGGAAAUUUUA-------------------------------------GAUU-----UUCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGC--GAAGAAAUAAGCCUAGGGA--CGGA-----UUUU-----UCCG--UUACGGC--GACU-GAAA-GG-GCUAAGUC--UUUG------GAUAUGUCUGAUUAGGUC-UGAAA--GUGCCACAGUGACGUAGUUCUUU-UG-----------------------GAAA------------------------CAG-AAGAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAU-G-GAGUG--CGUGGAAGC---GAACAUAG-CACUCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAAA--U-GGUA--------------CCUA-------------------GUCAUUUCC-GGAACAAAACAUGGCUUACAGAA-----------------------
>CP000414.1_621486-621858
-------AGUAUC-GGGUAAUUGCGCGUUAUAU----------------------------------------UUCU-----AACGUGAGGAAGGUCCAUG-CUCGUACAC-UC-UGAGAU-GGGUGUAGUGUUUGU-GCUGGGA--UAAAAAAUAAACCCAGGAA--CA-------GUGA-------UG--UUACGGC--AGUC-GAAA-GG-GCUAAGGC--UUAG------GCUAUGUCUGAAUAGGCU-CGAAG--GUGCCAUAGAAACGUAUAUGCUA-GU-----------------------GAAA------------------------GCU-AGUAUUUGAGACG-AGGUAAACCCCACAAACGGGCAACCCAAACUUU-UGGUAGGGGCGG-C-UGGCC--UAGUGAAAU---GAAGCGAU-GGUCGGUAUGGUUCGUU-------------UGAA----CGAA--CUUAGAUAGAUGAUUACCGAAGGUGUA--A-UGUU--------------ACCU-------------------GCAUUACACUGGAACAAAACAUGGCCUAUAGAU-----------------------
>AP006627.1_2129636-2129255
-------GUCUUC-AGACAACCGCUGCGCAUU-----------------------------------------UUAU-----GUGUAGAGGAAAGUCCAUG-CUCGCACCG-GC-UGAGAG-GCCGGUAGUGUUCGU-GCCUAGU--UAAUCCAUAAGCUAGGGCA--GCUGC----UGUG-----CAGC--UGACGGC--AGGA-GAGA-UG-CCUACGUCCAAAUG------GAUAAGGCAUGCACUCCU-UGAAA--GUGCCACAGUGACGUAGUCUGCU-UG-----------------------GAAA------------------------CGG-GCAGAGUGGAACG-CGGUAAACCCCUCGAGCGAGAAACCCAAACAA--UGGUAGGGGCAU-U-UUUCAG-UCUGAAAAU---GAACGGAACUGAAAAAA-CGAA-----------------GCAA------UU--CGUAGAUAGAUGGUUGUCG---CCGGA--G-UACG--------------AGGC----UCAUCACCGUUUGUAGUACAAAGG---UACAGAACAUGGCUUAUCGAU-----------------------
>AE016830.1_1121959-1122327
-------AUUUUC-GGGUGAUCGCGGUUUGCUU----------------------------------------UUGC-----AAGCUGAGGAAAGUCCAUG-CUCGCACAA-GC-UGAGAU-GCUUGUAGUGUUCGU-GCUUAGC--GAAAUCAUAAGCUAAGGUA--CUCU------UUU-----AGAG--UAACGGC--AGGA-AAAA-UG-ACUAAGGU--UUCG------ACUAUGUCAAAGUAUCCU-UGAAA--GUGCCACAGUGACGAAGCGAUGU-GG-----------------------GAAA------------------------CUC-CAUCGGUGGAACG-CGGUAAACCCCUCGAGCGAGCAACCCAAACAA--UGGUAGGGGCGC-U-CUUCU--AAAGGAAAU---GAACGAGU-AGAAGAGG-CAGAG----------------UUUA-----CUC--UGCAGAUAGAUGAUGACCG---UCACC--A-AUUU--------------UUCC--------------UGAAGAAUUGGUGA---UACAGAACAUGGCUUAUAGAA-----------------------
>AJ511704.1_6-373
-------AUUUUU-GGAUAAUCGCGUGAGAGAUUC--------------------------------------UUCC-----CUCAUGAGGAAAGUCCAUG-CUAGCACAG-GC-UGUGAU-GCCUGUAGUGUUUGU-GCUAGGU--GAAUUCAUAAGCCUAGGGA--CUUGA----UGUU-----CAAG--UUACGGC--GGGU-GAAA-GA-GCUAAGUC--UUUG------GAUAGGUUCUAGUAACUC-UGAAA--GUGCCACAGUGACGUAGUUUUUA-GG-----------------------GAAA------------------------CCU-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAU-G-GAAUA--CGUGGAAAC---GAACAUAG-UAUUCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAAA--U-GGUA--------------CCUA-------------------GUCAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511671.1_6-373
-------AUUUUU-GGAUAAUCGCGUGAUAAUA----------------------------------------UUUU-----AUCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCCAGGC--GAACAAAUAAGCCUGGGGA--UGUGU----UUUG-----CACA--UUACGGC--GGAU-AAAA-UU-GCUAAGUC--UUCG------GAUAGGUGAGAGUCAUCC-UGAAA--GUGCCACAGUGACGUAGCUUUUA-UG-----------------------GAAA------------------------CAU-AAAAGGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GAAGA--GCCGGAAACA--GAACGGUC-UUUUCUGA-CUGC------------------AUA------GC--AGUAGACAGAUGAUUAUCGAA-GAAGG--U-GAGA--------------CCUA-------------------GUCAUCUUU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511675.1_6-369
-------AUUUUU-GGAUAAUCGCGUAGCUUU-----------------------------------------UUAG-----GUUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGC--GAAAAAAUAAGCCUAGGAA--UGUC------UUU-----GACA--UUACGGC--GGAA-AAAA-AG-GCUAAGUC--GAAU------GAUAUGCCUGAGUAUUUC-UGAAA--GUGCCACAGUGACGCAGUUUCUA-UG-----------------------GAAA------------------------CGU-AGAAAAUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAU-G-GGAUAG-ACGGGAAAC---GAACCUUC-UAUCCUGA-CUG------------------UUUA-------C--AGUAGACAGAUGAUUAUCGAA-AGAAG--U-AAUA--------------CCUA-------------------GUUAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>CP000416.1_875033-874654
-------GAUCCU-GAGUAAUCGCGGUCGGCUU----------------------------------------AUGU-----CGGCUGAGGAAAGUCCAUG-CUCGCACAG-GC-UGCGAU-GCCUGUAGUGUUCGU-GCUCGGU--GAAAAAAUAAGCCGGGGGA--CGUUA----GCAA----UAGCG--UUACGGC--GGGA-AAAAACG-GCUAAGGC--UUCG------GCUAUGCUUGAGUAUCCC-UGAAAA-GUGCCACAGUGACGAUACGCCUA-GG-----------------------GAAA------------------------CCU-AGGCGGUGGAACG-CGGUAAACCCCUCGAGCGGGCAACCCAAACUUU-UGGUAGGGGCGC-U-UCACA--UAUGGAAUU---GAACGAAA-UGUGGGGG-GAGAG----------------GAAA-----CUC--UCGAGAUAGAUGAUUACUG---CCAGC--U-GAUC--------------GUUU---------GCCUGAAACGGUUGGGUGG---UACAAAACAUGGCUUACAGGG-----------------------
>AJ511708.1_6-378
-------AUUUUU-GGAUAAUCGCGUAGUAUUU----------------------------------------UAAU-----ACUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGC--GAAAAAAUAAGCCUAGGAA--UGUAC----UUUA----GUACA--UUACGGC--GAGU-GAAA-UG-GCUAAGUC--CUUU------GAUAUGCCAAAGUAAGUC-UGAAA--GUGCCACAGUGACGCAGUUUUUA-UG-----------------------GAAA------------------------CGU-AAAAAAUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAU-G-GAAUAG-CAUGGAAAC---GAACAGGC-UAUUCUGA-CUGUAA---------------UACA-----AUC--AGUAGACAGAUGAUUAUCGAA-AGAAG--U-GGUU--------------CCUA-------------------GUCACUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>CP000413.1_1024282-1023914
-------AAUUUC-GAGCGAUCGCGGUUAGCUU----------------------------------------AUAC-----UAGCUGAGGAAAGUCCACG-CACGCACAA-GC-UGAGAU-GCUUGUAGUUUUUGU-ACUCAGC-----CCAAUAAGCUGGGGGA--CUUGUU---UUUA----GCAAG--UUACGGC---GGA-AAAA-GC-ACUAAAUCA-UUUU----UUGACAUGUGUGACUAUCCU-GAAAA--GUGCCACAGUGACGAAGCAGCAA-GG-----------------------GAAA------------------------CUU-UGCUGGUGGAACG-AGGUAAACCCUGCAAGCGGGCAACCCAAAUU---UGGUAGGGGCGC-UUUCGUC--UAAGUAAAU---GAACUAAA-GACGAAGU-CAUU------------------UUU------AA--UGAAGAUAGAUGGUCGCUGAA-GAUAA--G-AUUCA-------------ACCA-------------------AAUCUUAUU-GGAACAGAACGUGGCUUAUAGAG-----------------------
>CP000423.1_1471802-1471437
-------GGUCCU-GAGUGAUCGCGGUCUGCUU----------------------------------------UUGC-----AGGCUGAGGAAAGUCCAUG-CCCGCACAA-GC-UGAGAU-GCUUGUAGUGUUCGU-GCUAAGC-----CCAAUAAGCUUAGGGG--CCGU-----GUAA-----ACGG--CUACGGC--GGCC-AAAC-GC-GCUAAGGC--GUCA------GCUAUGCGCUAGUAGGUC-UGAAAA-GUGCCACAGUGACGAAACGAUCA-GG-----------------------GAAA------------------------CCU-GAGCGGUGGAACG--GGUAAACCCCGCGAGCGAGUAACCCAAACUUU-UGGUAGGGGCGU-U-UUGCC--AAGCAAAUU---GAAGCGAC-GGCAAUAC-AGCG-----------------GUAA------CG--CUGAGAUAGAUGAUGACUGAA-GGAGC--U-UGUGC-------------CUGA-------------------ACAAGUUCU-GGAACAAAACAUGGCUUAUAGGG-----------------------
>AJ511743.1_6-374
-------AUUUUU-GGAUAAUCGCGUGAGAAUAUUU-------------------------------------UAUU-----UUCAUGAGGAAAGUCCAUG-CUAGCACGG-GC-UGUGAC-GCCCGUAGUGUUUGU-GCUAGGU--GAAACAAUAAGCCUAGGGA--CGGA-----AAUA-----UCCG--UUACGGC--GACU-GAAA-UG-GCUAAGUCU-CUCU------GAUAAGUCAAACUAGGUC-UGAAA--GUGCCACAGUGACGUAGUUUUUG-UG-----------------------GAAA------------------------CGC-AAGAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAC-G-GAGUG--CGUGGAAAC---GAACAUAG-CAUUCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAAA--U-GAUA--------------CCUA-------------------GUUAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AACY020292620.1_1543-1207
-------CAUUGC-AGGCAACCG-AGCCA--------------------------------------------GCGA-----UGGUU-AGGAAAGUCCAUG-CUAGCACAG-GC-UGCGAUCGCCUGUAGUGAUUGU-GAUAGAG--GAAACCAUAACUCUAUGCA--CCC------GAGA------GGG--UGACGGC--UGAG-AAAG-AG-GCUUA-------UC---------AAGUCUUGAGUAUCUUUAAAA--GUGCCACAGAGACGAG-CUCUUU-UA-----------------------GCAA------------------------UAA-AAGAGGUGGAACG--GGUAAACCCCGCAAGCUAGAAACCCAAAUUU--UGGUAGGGGCAC-U-UGGCG--UGAGAAACU---GAACUUAA-CGCCGAGG-UACGA----------------UU-------UUG--UACAGAUAAAUGGUUGCCA---CCCUU----------------------UUUA-----------------------AAGGG---UACAGAACAUGGCUUAU-GCA-----------------------
>AJ511669.2_6-373
-------AUUUUU-GGAUAAUCGCGUGGUACCUU---------------------------------------ACGU-----ACCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGU--GAAUUAAUAAGCCUAGGGA--CAUCU----UUUU-----GAUG--UUACGGC--GAGU-GAAA-AA-GCUAAGUC--UUUU------GAUAUGCUUGAAUAGCUC-UGAAAA-GUGCCACAGUGACGUAGUUCUUG-GG-----------------------AAAA------------------------CCC-GAGAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAC-G-GGAUA--GUAGGAAAC---GAACGAUU-UAUCCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAGA--U-AAGG--------------CCUA-------------------GUUAUCUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>CP000411.1_1021545-1021185
-------CAAAUC-GGAUGAUCGCGCGAUGA------------------------------------------AAGA-----CUCGUGAGGAAGGUCCAUG-CCCGCCCAA-UC-UGAGAU-GAUUGGAGUGUUUGU-ACUGAGC-----CCAAUAAGCGAAGGCA--GU-A-----UUUA-------AC--UGACGGC--UAGC-GAAA-GG-ACUAAAGC--UUA-------GCCAUGUCUGAUUAACUUAUAAAA--GUGCUAUAGCGACGAAU--AACC-GG-----------------------GAAA------------------------CCG-GGGAAGUGAGACG-ACGUAAACCCUGCAAGCGGGCAACCCAAACUUUUUGGUAGGGGCGG-U-CAAUU--UGGCUAAAU---GAAGUAAA-AAUUGACA-CCGGU----------------UUUA-----UCC--GGUAGAUAGAUGAUCGUCGAA-GAACG--U-GAUC--------------GCCA-------------------AUCUCGUUU-GGAACAUAACAUGGCCUAUAGAU-----------------------
>AJ511698.1_6-387
-------AUUUUU-GGAUAAUCGCGUGAAGAGGAUC-------------------------------------UCUU-----UUCAUGAGGAAAGUCCAUG-CUAGCACAG-GC-UGUGAU-GCCUGUAGUGUUUGU-GCUAGGC--GAAUCCAUAAGCCUAGGGA--CGAG-------AA-----AUCG--UUACGGC--AGUC-GAAA-UG-GCUAAGUC--UUCG------GAUAGGUCAAAAUAGGCU-UGAAA--GUGCCACAGUGACGGAGUCUUUC-UG-----------------------GAAA------------------------CAG-AGAGAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAAUUU--UGGUCGGGGCAU-G-GAGUG--CACGGAAAC---GAACGUAG-UACUCUGA-CUGCUAGCAGAUUUAUGC---UGUU-----AGC--GGUAGACAGAUGAUUAUCGA--AGGAA--G-UGGU--------------CCUA------------------GUCACUUCUG--GAACAAAACAUGGCUUAUAGAA-----------------------
>CP000233.1_856590-856964
-------AAUUUC-UGGUAAUCGCGGUCUAUGU----------------------------------------AUAU-----AGGCUGAGGAAAGUCCAAG-CUUGCACAG-GC-UGAGAU-GCCUGUAGUGAUCGU-ACUUGCU--GAAAAAAUAAGGCAAGGCA--CUGCU----UUUA-----GUAG--UGACGGC--AGAC-AAAA-GA-GCUAAGGU--UUCG------GCUAUGCUUGAGUAGUCU-UGAAAA-GUGCCACAGUGACGAAGUAAUAU-AG-----------------------GAAA------------------------CUG-UAUUAGUGGAACG-CGGUAAACCCUGCGAGCAGGUAACCCAAACUU--UGGUAGGGGCGC-U-UCAUG---AUGGAAAU---GAACUAAU-CAUGGGGG-CGAGUUU--------------UUUA-----ACU--CGGAGAUAGAUGAUUACCA---CCGAU--U-CUAA--------------UUUU------------CCUGAAUUAGAUGACG---UACAGAACGUGGCUUAUAGAG-----------------------
>U00089.2_571800-571471
-------GCUGUC-GGUCAGUUGCUGCUC--------------------------------------------AAU------GAGUAGAGGAAAGUCCAUG-CUUGCACUU-GC-UGGAAC-GCAAGUAGUGUUUGU-GUAAAUU--GAACAAAUAAGAUUUAGGA--CGCU-----AAUA-----GACG--UCACGAC--UGGA-CUAG----UCUAAGGUC-UUUG------ACUAUGA--UGAUGUCCG--UAAA--GUACCACAGAGACGA---GCUUA-GU-----------------------GAAA------------------------ACU-AAGU-AUGAAACG-CGGUAAACUCCACAAGCAAGAAACCUAAAUUU--UGGUAAGGGAAU-G-UUACU--UUAAGAAAA---AUAAUUAA-AGUAAUGA-CAG-G----------------AUUA-------C--UGUAGAUAAAUAACUGACU------------------------------UUAA-------------------------------AACAGAACAUGGCUUAUUGGC-----------------------
>AJ512493.1_6-377
-------AUUUUU-GGAUAAUCGCGUAGUAUUU----------------------------------------GUAU-----ACUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGC--GAAAAAAUAAGCCUAGGGA--CGUAUCU--UUGA-----UGCG--UUACGGC--AGGU-AAAA-UG-GCUAAGUC--UUUG------GAUAUGCCUGAGUAACCU-UGAAA--GUGCCACAGUGACGAAGUUUUCA-GG-----------------------GAAA------------------------CCU-GAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAU-G-AGAUAG-CUGGAAGUC---GAACAGAACUAUCUUGA-CUGC------------------UUU------GC--AGUAGACAGAUGAUUAUCG---AGGAA--G-UUGU--------------GUGC--------------CUAGUCAACUUCUG---AACAAAACAUGGCUUAUAGAA-----------------------
>AJ511668.1_6-374
-------AUUUUU-GGAUAAUCGCGUAGUAUUC----------------------------------------CAAU-----ACUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGAUUGU-GCUAGGC--GAACAAAUAAGCCUAGGGA--UGUG-----CUUA-----UACA--UUACGGC--GAAG-AAAA-UG-GCUAAGUC--CUUG------GAUAUGCCAAAGUACUUC-UGAAA--GUGCCACAGUGACGAAGUUUUUA-UG-----------------------GAAA------------------------CGU-AAAAAAUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUA--GUUGGAAAC---GAACAAGC-UAUCCUGA-CUGUU----------------AUUA-----GAC--AGUAGACAGAUGAUUAUCGAA-AGAGA--U-GAGA--------------CCUA-------------------GUCAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AE017263.1_229614-229950
-------UUUUAU-GGUCAAUCGCUGCAUUUUU----------------------------------------AUUA-----AUGUAGAGGAAACUCCACG-CUUGCACAA-UC-UGAGAU-GGUUGUAGUGAUUAU-GCUAGAC--GAAAAAAUAAGUCUAGGCA--AUAC-----GCAA-----GUAU--UGACGGC--AUAA-CUAA----CCUAAGGCU-UUUG------GCUAUGG--AGAUGUUAU---GAA--GUGCCACAGAGACGAGU---AUA-GG-----------------------GAAA------------------------CCU-U-GAAAUGGAACG-CGGUAAACCCCAUAAGUAAGAAACUUAAAUUU--UGGUAAAGGAAC-U-UGGCG--AACAGAAAU---GAAUGUA--AACCAGGA-GGAU------------------UAU------AU--CCUAGAUAGAUGAUUGACA---CC-------------------------GAAA--------------------------GG---UACAAAACGUGGGUUAUAGUA-----------------------
>AJ511692.1_6-374
-------AUUUUU-GGAUAAUCGCGUAGUAUUC----------------------------------------AAAU-----ACUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGCGAU-GCCGGUAGUGUUUGU-GCUAGGC--GAAAAAAUAAGCCUAGGGG--GGUAGUC--UUUU----CUGCC--CUACGGC--GAGU-AAAA-UG-GCUAAGUC--GUAA------GAUAUGUCAGAAUAACUC-UGAAA--GUGCCACAGUGACGUAGUUUUUA-UG-----------------------GAAA------------------------CGU-AAAAAAUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUA--GCUGGAAGU---GAACGGUC-UAUCCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAGA--U-GGUA--------------CCUA-------------------GUCAUCUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511696.1_6-372
-------AUUUUU-GGAUAAUCGCGUGGUGUUU----------------------------------------AGAU-----ACCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGC--GAAAAAAUAAGCCUAGGGA--GGUA-----GCGA-----UACC--UUACGGC--GAUC-AAAA-GA-GCUAAGUC--UUU-------GAUAUGCUCAAGUAGAUC-UGAAAA-GUGCCACAGUGACGUAGUUUUUA-GG-----------------------GAAA------------------------CCU-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUA--GUUGGAAAC---GAACGAUC-UAUCCUGA-CUGC-----------------UUUU------GC--AGUAGACAGAUGAUUAUCGAA-GGUGG--C-AAGA--------------CCUA-------------------GUUGCCGCC-GGAACAAAACAUGGCUUAUAGAA-----------------------
>CP000412.1_862723-863083
-------AAUUUC-GAGCAGUCGCGGCCGGCCUU---------------------------------------GAGC-----CGGCUGAGGAAAGUCCACG-CACGCACGG-GC-UGCGAU-GCCCGUAGUGAUCGU-AUUCAGC-----CCAAUAAGCUGGAGGA--GGCC------CCA-----GGCC--UCACGGC---AGA-GAAA-GC-GCUAAAGC--CUA-------GCCAUGCGUGAAUAUCU--UGAAA--GUGCCACAGUGACGGAGCAAGCC-GG-----------------------GAAA------------------------CCG-GUUUGGUGGAACG-AGGUAAACCCUGCGAGCGUGUAACCCAAAAUU--UGGUAGGGGCGU-CUCAACU--UAGGUAAAU---GAACCAAA-AGUUGGAC-UACAU----------------C--------AUG--UAGAGAUAGAUGGCUGCUGAA-ACCAG--C-CGCG--------------GCCG-------------------GCGGUUGGU-GGAACAGAACGUGGCUUAUAGAA-----------------------
>AJ511693.1_6-372
-------AUUUUU-GGAUAAUCGCGUAGUAUU-----------------------------------------GUAA----UACUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGC--GAAACAAUAAGCCUAGGGA--UGUA------AAA-----UACA--UUACGGC--AGGU-AAAA-UA-GCUAAGUC--UUUU------GAUAUGCUAAAGUAACCU-UGAAA--GUGCCACAGUGACGAAGUUUUUA-UG-----------------------GAAA------------------------CGU-AAAAAAUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAU-G-GGAUAG-UUUGGAAAC---GAACGAAC-UAUCCUGA-CUGU-----------------UUAA------UC--AGUAGACAGAUGAUUAUCGAA-GGAAA--U-AAUC--------------CCUA-------------------GUUAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511681.1_6-373
-------AUUUUU-GGAUAAUCGCAUGGUAGGA----------------------------------------AUCU-----ACCAUGAGGAAAGUCCAUG-CUAGCACCG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGC--GAACCAAUAAGCCUAGGGA--CGUA-----GCAA-----UGCG--UUACGGC--GAUU-GAAA-GA-GCUAAGUC--GCAA------GAUAUGUUCGAGUAGGUC-UGAAAA-GUGCCACAGUGACGGAGUUUUUA-UG-----------------------GAAA------------------------CAU-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAAUUU--UGGUCGGGGCAU-G-GGAAA--GUCGGAAACA--GAACGAAC-UUUCCUGA-CUGC-----------------AUAA------GC--AGUAGACAGAUGAUUAUCG---AAGGU--G-GUAGUGC-----------CUAG-------------------UACCACUGG---AACAAAACAUGGCUUAUAGAA-----------------------
>AJ511680.1_6-373
-------AUUUUU-GGAUAAUCGCGUAGUAUUC----------------------------------------AAAU-----ACUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GCUAGGC--GAACAAAUAAGCCUAGGGA--CAUAUA---AAUA-----UAUG--UUACGGC--GAGU-AAAA-UA-GCUAAGUC--UUUU------GAUAUGCUUGAGUAGCUC-UGAAA--GUGCCACAGUAACGAAGUUUUUA-UG-----------------------GAAA------------------------CGU-AAAAAAUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUA--GUUGGAAAC---GAACAAGC-UAUCCUGA-CUGUU----------------U--------GAC--AGUAGACAGAUGAUUAUCGAA-GGAAA--U-GAUU--------------CCUA-------------------GUUAUUUCC-GGAACAAAACAUGGCUUAUAGAA-----------------------
>CP000422.1_936616-936988
-------AAUCUC-GGGUAAUUGCGGUUAGCAU----------------------------------------CUGC-----UAACUGAGGAAAGUCCAUG-CUCGCACAA-GC-UGCGAU-GCUUGUAGUGUUCGU-GCCUGGU--GAAAAAAUAAGCUGGGGCA--UUUGC----UUUG-----CAAA--UGACGGC--AAGU-GAAC-AA-GCUAAAGCC-UUCG------GUCAUGCUUAAGUAGCUU-UGAAAA-GUGCCACAGAGACGAU-CUUAUU-AA-----------------------GAAA------------------------UUA-AUAAGUUGGAACG-CGGUAAACCCCUCGAGCGGGCAACCCAAACUA--UGGUAGGGGAGC-U-UCACA--UCUGGAAUU---GAACUAAA-UGUGGGGG-CAGAC----------------AUU------GUC--UGGAGAUAGAUGAUUACC----CAAAU--U-UAAA--------------UUUU-----------CCUGAGAAUUUAUUUUG---GACAAAACAUGGCUUAUAGAG-----------------------
>AJ511687.1_6-387
-------AUUUUU-GGAUAAUCGCGUGGAGAGUUUA-------------------------------------UCUU-----UUCAUGAGGAAAGUCCAUG-CUAGCACAG-GC-UGUGAU-GCCUGUAGUGUUUGU-GCUAGGC--GAAACCAUAAGCCUAGGGA--CGAG-------AA-----AUCG--UUACGGC--GAGU-GAAU-AG-ACUAAGUU--UUCG------GAUAUGUUUUAGUAGCUC-UGAAA--GUGCCACAGUGACGAAGUCUCUC-UG-----------------------GAAA------------------------CAG-AGAGAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAAUUU--UGGUCGGGGCAU-G-GAGUG--CGCGGAAAC---GAACGUAG-UACUCUGA-CUGCUAGCAGCUUCUAGC---UGUU-----AGU--GGUAGACAGAUGAUUAUCGA--AAGAA--G-UGGU--------------CCUA------------------GUCACUUCUG--GAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511702.1_6-373
-------AUUUUU-GGAUAAUCGCGUGGUUAUU----------------------------------------GGUG-----ACCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCGGUAGUGUUUGU-GUUAGGC--GAAAAAAUAAGCCUAAGGA--UGUGG----UUAA-----CACA--UUACGGC--GGAU-AAAA-UC-ACUAAGUC--UUAU------GAUAUGUGAGAGUCAUCC-UGAAA--GUGCCACAGUGACGUAGUUUUUA-UG-----------------------GAAA------------------------CAU-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAC-G-GAAAA--GCUGGAAGAA--GAACAGUC-UUUUCUGA-CUGC------------------AAA------GC--AGUAGACAGAUGAUUAUCAAA-GAAGA--U-AAUA--------------CCUA-------------------GUUAUCUUU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AAHK01009266.1_373-66
-------UUGCAC-AGCCAACUGCUGCAGAUUUU---------------------------------------AAUU-----AUGUAGAGGAAAAUCCGCU-CUAACACUU-GC-UGCGAU-GCAAGUAGUGUUCAU-GCUAGGC-----CCAAUAAGCCUAGGCA--GUUAUUUUGUAAA-----UAAU--UGACGAC---------------------------------------------------------CA--GUGCAACAGAGACGAG-CUUAUU-U-----------------------------------------------------AG-UUAAGGUGCAACG-AUGUAAACUCCAUGAGUUAGAAACCCAAAUUU--CGGUAGGGGAAC-C-UAGUU--AAGAUAAAU---GAAUUGA--GACUGGGA-AGUUU----------------UUU------AAA--CUUAGAUAAAUAGUUGGCA---CUGUA-------U--------------UUUU-----------------------UACAG---CACAAAAAGCGGUUUAUCGUG-----------------------
>AJ511699.1_6-376
-------AUUUUU-GGAUAAUCGCAUGUCGCUUUUUUC-----------------------------------UGUC-----GGCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGU--GAAACAAUAAGCCUAGGGA--UGUCU----AUUU-----GACA--UUACGGC--GGAC-GAUG-AG-GCUAAGUC--CUUG------GAUAUGCCU--CUAGUCC-UGAAA--GUGCCACAGUGACGGAGCCUUUG-AG-----------------------GAAA------------------------CUC-AAGGGGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAC-G-AGAUG--GCUGGAAUGC--GAACGGAC-CAUCUUGA-CUGC-----------------GCAA------GC--AGUAGACAGAUGAUUAUCG---AAGGG--G-GUAGGAC-----------CUAG-------------------UACCUCUGG---AACAAAACAUGGCUUAUAGAA-----------------------
>AJ511706.1_6-376
-------AUUUUU-GGAUAAUCGCGUGGUGCAUU---------------------------------------UGGU-----AUCAUGAGGAAAGUCCAUG-CUAGCACCG-GC-UGUGAU-GC-GGUAGUGUUUGU-GCUAGGU--GAAUCAAUAAGCCUAGGGA--CAUCUUUUUGGAA-----GGUG--UUACGGC--GAGC-GAAA-GG-GCUAAGUC--GUUA------GAUAGGUCUGAGUUGCUC-UGAAA--GUGCCACAGUGACGUAGUUUUUA-GG-----------------------GAAA------------------------CCU-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUA--GUUGGAAGAC--GAACAAUC-UAUCCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAGG--U-AAGA--------------CCUA-------------------GUUACCUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AAAK03000070.1_106-473
-------GUUUUC-GGGUAAUCGCGGUCUGACUU---------------------------------------GAUC-----AGGCUGAGGAAAGUCCAUG-CUCGCACAG-GC-UGUGAU-GCCUGUAGUGUUCGU-GCUUAGC--GAAACCAUAAGCUAAGGUA--CUCU-----UU-------GGAG--UAACGGC--AGGA-AAAC-AA-GCUAAGGC--UUCG------GCUAUGCUUAAGUAUCCU-UGAAA--GUGCCACAGUGACGAAGCGGCUG-GG-----------------------GAAA------------------------CCC-AUCCGGUGGAACG-CGGUAAACCCCUCGAGCGAGCAACCCAAACAA--UGGUAGGGGCGC-U-UUUUG--UCUGGAAGAA--GAACAGGA-CAAAAAGG-CAGU------------------AUA------AC--UGCAGAUAGAUGGUUACCG---CUUUG--U-UUUU--------------UCUC-------------CCUGGAAAAGCAAAG---UACAGAACAUGGCUUAUAGAA-----------------------
>AJ511670.1_6-371
-------AUUUUU-GGAUAAUCGCGUAGUAUUU----------------------------------------UGAU-----ACUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGC--GAAAAAAUAAGCCUAGGGA--UGUG-----CUUG-----CACA--UUACGGC--GAAA-GAAC-UG-GCUAAGUC--UUU-------GAUAUGCCACAGUAUUUC-UGAAA--GUGCCACAGUGACGCAGUUUUUA-UG-----------------------GAAA------------------------CGU-GAGAAAUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAC-G-GGAUA--GUUGGAAAC---GAACAAGC-UAUUCUGA-CUGU-----------------UUAA------AC--AGUAGACAGAUGAUUACCGAA-GGAAU--U-AAUA--------------CCUA-------------------GUUAUUUCC-UGAACAAAACAUGGCUUAUAGAA-----------------------
>AP006716.1_1492055-1492438
-------UAUUUU-GGGUAAUCGCUAUA---------------------------------------------GAAA------UAUAGAGGAAAGUCCAUG-CUCACACAG-UC-UGAGAU-GAUUGUAGUGUUCGU-GCUUGAU--GAAACAAUAAAUCAAGGCA-----------UUAA---UU------UGACGGC--AACG-AAAU-AA-CCUAAGUC--UUAU------GAUAUGGUUAAAUUAGUU-UGAAA--GUGCCACAGUGACGUAGCUUUCA-UA-----------------------GAAA------------------------UAU-GAAGGGUGGAACG-CGGUAAACCCCUCGAGUGAGCAAUCCAAAUU---UGGUAGGAGCAC-U-UGUUU--AGCGGAAUU---CAACGUAU-AAACGAGA-CAUCUUUAUUCGAAAU-----AUAA-----AGAUUUGUAGACAGAUGGUUACCA---CCGAC--G-UACC--------------AGUACAACUAGUGUACGUUAUGAGUACAACGG---UACAGAACAUGGCUUACAGAA-----------------------
>AF242853.3_587-938
-------UGUUGC-AGUUGGUUGCUGUUUUAUU----------------------------------------UA-------AAGCAGAGGAAAGUCCAUG-CUCGCACAA-GC-UGUGAUUGCUUGUAGUGUUUGA-GUAAAUAAAUAAAAGAUAAAAUUUAGCA--GAUUAG---AAUU-----AGUC--UGACGGC--GGAA-AAGU-UG-CUAAAUUGC-UAAA-----ACAACAUGCAAAUUAUUCC-AUAAC--GUGCCACAGAGACGA--GUUGAGCUC-----------------------GAAA------------------------GAC-UCAGUAUGAAACG-CGGUAAACCCCUCAAGCGAGAAACCUAAAUU---UGGUAAGGGAAC-U-AAUAA--ACAAGAAAC---AGAAUUGU-UUAGAAGA-AUAAAAAUCA-----------AAUU-----UUU--AUUAGAUAAAUAACCAAUC--------------------------------AA-------------------------------GACAGAACAUGGCUUAUCGCA-----------------------
>AJ511721.1_6-373
-------AUUUUU-GGAUAAUCGCAUGGUUGCUA---------------------------------------GUCU-----UCCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGU--GAAUCAAUAAGCCUAGGGA--CUUGA----UUUU-----CAAG--UUACGGC--GAGC-GAAC-UA-GCUAAGUC--UUAG------GAUAGGUUUUAGUAGCUC-UGAAA--GUGCCACAGUGACGGAGUUUUUA-GG-----------------------GAAA------------------------CCU-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUG--GCUGGAAAC---GAACGGAC-CAUUCUGA-CUGC------------------UAU------GC--AGUAGACAGAUGAUUAUCGAA-GGAAG--U-GGUA--------------CCUA-------------------GUCACUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511728.1_6-370
-------AUUUUU-GGAUAAUCGCGUGAAGAGUCG--------------------------------------UCUU-----UUCAUGAGGAAAGUCCAUG-CUAGCACGG-GC-UGUGAU-GCCCGUAGUGUUUGU-GCUAGGU--GAAACAAUAAGCCUAGGGA--CGAG-------AA-----AUCG--UUACGGC--GGAC-GAAA-CA-GCUACGUC--UCUG------GAUAUGCUGGAAUAGUCC-UGAAA--GUGCCACAGUGACGUAGUUUUUG-CG-----------------------GAAA------------------------CGC-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAC-G-GAAUG--CGUGGAAAC---GAACACAG-CAUUCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAAA--U-GAUA--------------CCUA-------------------GUUAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>CP000419.1_240600-240968
-------AUUUUC-GGAUAAUCGCAUGGUUGCAA---------------------------------------GUCU-----UCCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGU--GAAUCAAUAAGCCUAGGGA--CUUGA----UUUU-----CAAG--UUACGGC--GAGC-GAAC-CG-GCUAAGUC--UUCG------GAUAGGUUUUAGUAGCUC-UGAAA--GUGCCACAGUGACGGAGUUUUUA-GG-----------------------GAAA------------------------CCU-AAAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAC-G-GGAUG--GCCGGAAAC---GAACGGAC-CAUUCUGA-CUGC------------------UAU------GC--AGUAGACAGAUGAUUAUCGAA-GGAAG--U-GGUUA-------------CCUA-------------------GUCACUUCU-GGAACAGAACAUGGCUUAUAGAA-----------------------
>CP000557.1_1480049-1480446
-------AUGUUC-GGGUAAUCGCUGCGGCCGGUU--------------------------------------UCGG-----CCGUAGAGGAAAGUCCAUG-CUCGCACGGUGC-UGAGAU-GCCCGUAGUGUUCGU-GCCUAGC--GAAUCCAUAAGCUAGGGCA--GUCUGGC--UUCG--GCUGGGC--UGACGGC--GGGG-AAAG-AA-CCUACGUCCGAAUG----CGGAUAUGGUUCGAUUACCC-UGAAA--GUGCCACAGUGACGGACCUCUAA-GG-----------------------GAAA------------------------CCU-UAGAGGUGGAACG-CGGUAAACCCCACGAGCGAGAAACCCAAAUGA--UGGUAGGGGCAC-C-UUCCC--GAAGGAAAU---GAACGGA--GGGAAGGA-CAGGCGACGCG----------UGUU-----GCC--UGUAGAUAGAUGAUUACCG---CCGGA--G-UACG--------------AGGC----GAAAAGCCGUUGGCAGUACGAAGG---UACAGAACAUGGCUUACAGAA-----------------------
>AJ511694.1_6-387
-------AUUUUU-GGAUAAUCGCGUGAGGAGAAUU-------------------------------------UCUU-----UUCAUGAGGAAAGUCCAUG-CUAGCACAG-GC-UGUGAU-GCCUGUAGUGUUUGU-GCUAGGC--GAAACCAUAAGCCUAGGGA--CGAG-------AG-----AUCG--UUACGGC--AGUU-GAAA-UG-GCUAAGUC--UUCG------GAUAGGUCAGAGUAGGCU-UGAAA--GUGCCACAGUGACGGAGUCUUUC-UG-----------------------GAAA------------------------CGG-AGAGAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAAUUU--CGGUCGGGGCAU-G-GAGUG--CACGGAAAC---GAACGUAG-UACUCUGA-CUGCUAUCAGCUAUAGGC---UGUU-----AGU--GGUAGACAGAUGAUUAUCAA--AGGAA--G-UGGU--------------CCUA------------------GUCACUUCUG--GAACAAAACAUGGCUUAUAGAA-----------------------
>AJ511684.1_6-374
-------AUUUUU-GGAUAAUCGCGUAGUAUUC----------------------------------------CAAU-----ACUAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGAUUGU-GCUAGGC--GAACAAAUAAGCCUAGGGA--UGUG-----CUUG-----CACA--UUACGGC--GGAG-AAAA-UG-GCUAAGUC--CUUG------GAUAUGCCAAAGUACUUC-UGAAA--GUGCCACAGUGACGUAGUUUUUA-UG-----------------------GAAA------------------------CGU-AAAAAAUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUA--GUUGGAAAC---GAACAAGC-UAUCCUGA-CUGUC----------------AACA-----GAC--GGUAGACAGAUGAUUAUCGAA-GGAGA--U-GAUG--------------CCUA-------------------GUCAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>CP000764.1_1387139-1387530
-------GCGUUU-GGGUAAUCGCUGCAACGUA----------------------------------------AACG-----UUGUAGAGGAAAGUCCAUG-CUCGCACGA-CC-UGAGAU-GGUCGUAGUGUUCGU-GCCUAGC--CAAUUCAUAAGCUAGGGUA--UUCUGGCC-GCGA-GGCUGGUU--UAACGGC--AGGG-AAAA-AA-CCUAAGUCC-UUUU-----GGAUAUGGUUUGACUACCU-UUAAA--GUGCCACAGUGACGAAGUCCUUG-AA-----------------------GAAA------------------------UGA-UAGGAGUGGAACG-AGGUAAACCCCACGAGCGAGAAACCCAAAUAA--UGGUAGGGGAAU-C-UUUUC--CAAGGAAAU---GAACGAUG-GAAAAGGA-CAGGUUUG-------------AGUA-----ACC--UGUAGAUAGAUGAUUACCA---CCGGA--G-UACG--------------AGGC-----GUGGGCCGUUUGUAGUACAAAGG---AACAGAACAUGGCUUACAGAA-----------------------
>AJ511739.1_6-373
-------AUUUUU-GGAUAAUCGCGUGAGAAUAUUU-------------------------------------UAUU-----UUCAUGAGGAAAGUCCAUG-CUAGCACGG-GC-UGUGAU-GCCCGUAGUGUUUGU-GCUAGGU--GAAACAAUAAGCCUAGGGA--CGGA-----AGUA-----UCCG--UUACGGC--GGAC-GAAA-CA-GCUACGUC--UCUG------GAUAUGCUGGAAUAGUCC-UGAAA--GUGCCACAGUGACGUAGUUUUUG-UG-----------------------GAAA------------------------CAC-AAGAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAC-G-GAAUG--CGUGGAAAC---GAACGCAG-CAUUCUGA-CUG------------------GAAA-------C--AGUAGACAGAUGAUUAUCGAA-GGAAA--U-GAUA--------------CCUA-------------------GUUAUUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>BA000043.1_1581285-1581681
-------AUGUUC-GGGUAAUCGCUGCGGCCGGUU--------------------------------------UCGG-----CCGUAGAGGAAAGUCCAUG-CUCGCACGGUGC-UGAGAU-GCCCGUAGUGUUCGU-GCCUAGC--GAAUCCAUAAGCUAGGGCA--GUCUGGC--UUCG--GCUGGGC--UGACGGC--GGGG-AAAG-AA-CCUACGUCCGCAUG----CGGAUAUGGUUCGAUUACCC-UGAAA--GUGCCACAGUGACGCAGCUCUAA-GG-----------------------GAAA------------------------CCU-UAGAGGUGGAACG-CGGUAAACCCCACGAGCGAGAAACCCAAAUGA--UGGUAGGGGCAC-C-UUCCC--GAAGGAAAU---GAACGGA--GGGAAGGA-CAGGCGGCGUA----------CGCU-----GCC--UGUAGAUAGAUGAUUACCG---CCGGA--G-UACG--------------AGGC-----GAAAGCCGCUUGCAGUACGAAGG---UACAGAACAUGGCUUACAGAA-----------------------
>AJ511716.1_6-373
-------AUUUUU-GGAUAAUCGCAUGGUUGCUU---------------------------------------GUCU-----UCCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGUGAU-GCCAGUAGUGUUUGU-GCUAGGU--GAAUUAAUAAGCCUAGGGA--CUUGA----UUUU-----CAAG--UUACGGC--GAGC-GAAC-UG-GCUAAGUC--UUCG------GAUAAGUUUUAGUAGCUC-UGAAA--GUGCCACAGUGACGGAGUUUUUA-GG-----------------------GAAA------------------------CCU-AGAAAGUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUAGGGGCAU-G-GGAUG--GCUGGAAAC---GAACGGAC-CAUCCUGA-CUGCU----------------U--------AGC--AGUAGACAGAUGAUUAUCGAA-GGAAG--U-GGUA--------------CCUA-------------------GUCACUUCU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AE017333.1_2302197-2301811
-------ACGUUC-GGGUAAUCGCUGCAGAUUUU---------------------------------------ACAU-----CUGUAGAGGAAAGUCCAUG-CUCGCACGGUGC-UGAGAU-GCCCGUAGUGUUCGU-GCCUAGC--GAAGUCAUAAGCUAGGGCA--GCCUUG---CAGA-----AGGC--UGACGGC--AGGA-AAAA-AG-CCUACGUCC-UUUA----UGGAUAUGGCUGAGUAUCCU-UGAAA--GUGCCACAGUGACGAAGUCUCAC-UA-----------------------GAAA------------------------UGG-UGAGAGUGGAACG-CGGUAAACCCCUCGAGCGAGAAACCCAAAUUU--UGGUAGGGGAAC-C-UUCUG--GACGGAAAU---GAACGGA--AGGAAGGA-CAGAG----------------UUGA-----CUC--UGUAGAUAGAUGAUUACCA---CCCGA--G-UACG--------------AGGC---UUAGCAGCCGACGGCAGUACGACGG---AACAAAACAUGGCUUACAGAA-----------------------
>CP001176.1_1538131-1538521
-------ACGUUU-GGGUAAUCGCUGCAACGCC----------------------------------------AACG-----UUGUAGAGGAAAGUCCAUG-CUCGCACGG-CC-UGAGAU-GGCUGUAGUGUUCGU-GCCUAGC--CAAUUCAUAAGCUAGGGUA--UUCUGGCU-GUAA-GGCUGGUU--UAACGGC--AGGG-AAAA-AA-CCUAAGUCC-UUUC-----GGAUAUGGUUUGACUACCU-UUAAA--GUGCCACAGUGACGAAGUCCUUG-AA-----------------------GAAA------------------------UGA-UAGGAGUGGAACG-AGGUAAACCCCACGAGCGAGAAACCCAAAUAA--UGGUAGGGGAAU-C-UUUUC--CAAGGAAAU---GAACGACG-GGAAAGGA-CAGGUUU--------------UAUA-----ACC--UGUAGAUAGAUGAUUGCCA---CCGGA--G-UACGAGGCGUGGGCCGUUUGUA-------------------GUACAAAGG---AACAGAACAUGGCUUACAGAA-----------------------
>AL591981.1_209188-208807
-------ACGUUC-GGAUAAUCGCUGUUUUCUU----------------------------------------UUGA-----AAGCAGAGGAAAGUCCAUG-CUCGCACGGUGC-UGUGAU-GCCCGUAGUGAUCGU-GCCUGGU--CAAACAAUAAGCCAGGGCAUUCCGG-----UUUU-----CCGGUUUGACGGC--AGGU-GAAU-GA-CCUAAGUC--UUCG------GAUAUGGUCUUAUAACCU-UGAAG--GUGCCACAGUGACGAAGUUCCGG-CA-----------------------GAAA------------------------UGCUCGGAAGUGGAACG-AGGUAAACCCCACGAGCGAGAAACUCAAACUUA-UGGUAGGGGCAC-U-UUUCC--CGAGGAAUCA--AGAACAAG-GGACGAGG-CGCAAAUGU------------AUUU-----UUG--CGCAGAUAGAUGGUUAUCU---CUUUA--C-UAUU--------------ACCC--------------UGUACGUAGUAAAG---AACAGAACAUGGCUUACAGAG-----------------------
>CP001022.1_1294210-1294583
-------UGGUUC-GGACAAUUGCGGGGCACUU----------------------------------------CGGU-----GCUUUGAGGAAAGUCCAUG-CUCGCACAA-CC-UGCGAU-GGUUGUAGUGAUCGU-GCUACAC--GAAAAGAUAAGUGUAGGCA--GCGU-----C--------GUGC--UGACGGC--AGAA-GGAA-CG-CCUAAGUC--UUCG------GAUAUGGCCGAAACUUCU-UGAAA--GUGCCACAGUGACGGAGCCUUAC-UG-----------------------GAAA------------------------CAG-UAAGGGUGGAACG-AGGUAAACCCCACGAGCGAGAAACCCAAAUU---UGGUAGGGGAAU-U-UCCGG--AGCGGAACU---GAACGCG--AAGGAGAG-CGUAU----------------GUAA-----AUA--CGGAGAUAGAUGAUUGUCG---CCCAC--G-UGUGAGGG----------UCAA---------ACCGUUUGCAACACUAGGG---AACAGAACAUGGCUUACAGGA-----------------------
>AE005176.1_1702167-1701784
-------GUUUUC-GGAUAAUCGCGCGAUUUUUUU--------------------------------------GUAA-----AUCGUGAGGAAAGUCCAUG-CUCGCGCGUUGC-UGAGAU-GCACGCAGUGAUUGU-GCUAGGU--CAAACAAUAAACCUAGGUA--GGAGC----GUCA-----UGCC--UAACGGC--UGGC-CAAA-AC-GCUAAGUC--UUUU------GAUAUGCGUGAGUAGCCUGUAAAA--GUGCCAUAGAGACGAG-UCUUAG-AG-----------------------GAAA------------------------CUC-UAAGAAUGGAACG-UGGUAAACCCCUCAAGCGAGCAACCCAAACUUA-UGGUCGGGGCAC-U-UGACU--AGCCAAAAU---GAAGGCGU-GGUCGAGG-CUGAAAUUAA-----------GAAU-----UUU--GGCAGACAGAUGAUUAUCGAA-GGGGA--G-AUUC--------------ACGA--------------AUGUGAAUUGAACU-GGAACAAAACAUGGCUUAUAGAA-----------------------
>AAPZ02000002.1_258240-258615
-------AGUUUU-GGGUAAUUGAGCACAGCUU----------------------------------------AUGU-----UGUGUUAGGAAGGUCCAUG-CUCGCACAG-GC-UGCGAU-GCCUGUAGUGUUUGU-GCUCGCU--GAAAAAAUAAGGCGGGGCA--CCAU------UUU-----AUGG--UGACGGC--GGAA-AAAC-GG-ACUAAGGU--UUUA------ACUACGUCUUAGUAUUCC-UGAAAA-GUGCCACAGUGACGAUACAAUAU-UG-----------------------GAAA------------------------CGA-UAUUGGUGGAACG-CGGUAAACCCCUCAAGCGGUAAACCCAAACUA--CGGUAGGGGAGC-U-UUGGA--UAACAAAUU---GAAGUGAU-UCCAGGGG-AGAGUAUU-------------UCGA----UACU--CUGAGAUAGAUGAUUACCU---CGAUA--U-AAUUAUGCCU--------GAUA-------------------AUUAUAUUA--CGACAAAACAUGGCCUACAGAU-----------------------
>CP000903.1_1529096-1529487
-------ACGUUU-GGGUAAUCGCUGCAACGCC----------------------------------------AACG-----UUGUAGAGGAAAGUCCAUG-CUCGCACGG-CC-UGAGAU-GGCUGUAGUGUUCGU-GCCUAGC--CAAGUCAUAAGCUAGGGUA--UUCUGGCU-GCAA-GGCUGGUU--UAACGGC--AGGG-AAAA-AA-CCUAAGUCC-UUUC-----GGAUAUGGUUUGACUACCU-UUAAA--GUGCCACAGUGACGAAGUCCUUG-AA-----------------------GAAA------------------------UGA-UAGGAGUGGAACG-AGGUAAACCCCACGAGCGAGAAACCCAAAUAA--UGGUAGGGGAAU-C-UUUUC--CAAGGAAAU---GAACGACG-GAAAAGGA-CAGGUUUU-------------CGUA-----ACC--UGUAGAUAGAUGAUUACCA---CCGGA--G-UACG--------------AGGC-----GUGGGCCGUUUGCAGUACAAAGG---AACAGAACAUGGCUUACAGAA-----------------------
>CP000033.3_1133530-1133164
-------AAUUUC-GAGUAGGCGCGGCUAGCUU----------------------------------------UUGC-----UAGCUGAGGAAAGUCCACG-CACGCACAA-GC-UGCGAU-GCUUGUAGUGAUCGU-AUUCAGC-----UCAAUAAGCUGGAGGA--AAGUUA---UUUA-----ACUU--UUACGGC---GGA-AAAA-GU-GCUAAAUC--UUUG------GACAUGCAUUACUAUCC--UGAAA--GUGCCACAGUGACGUAGCAAAAU-CA-----------------------GAAA------------------------UGA-UUUUGGUGGAACG-AGGUAAACCCUGCGAGCGUGAAACCCAAAUUU--GGUGGGGGAGUU-U-CGAUC--UAAGGAAAU---GAACUAAA-GAUCGGGU-UAUUGCA--------------UUAG-----CAA--UAAAGAUAGAUGACUACUA---AUAGU--G-AUUUUGC-----------CAAG-------------------AAUCACUGG---AACAAAACGUGGCUUAUAGAA-----------------------
>AF222894.1_355530-355892
-------GUAAAA-AGCUAAUUGCUGCAUUUUUUA--------------------------------------AAAA-----AUGUAGAGGAAAGUCCGUG-CUCACACUA-AC-UGUGAU-GUUAGUAGUGUUUGU-GUAUGUA--UAAUUAAUAAGGCAUAGCA--UA-------GGCA-------UA--UGACGGC--AAAU-UUUU-AA-GCUAAGUGA-UUUA---AAUUAUAUGUUU-AAAAAUUUAUAAAA--GUGCCACAGAGACGA--UUAAUC-AA-----------------------GAAA------------------------UUG-AUGAGAUGAAACGUUGGUAAACCCCACAAGUGAGAAACCUAAAUUU--CGGUAAGGGAAU-C-UAAUU--UAGUAAAUU---AAGAAAUUAAAUUAGGA-UAGAAUUG-------------UUUA---CAUUC--UAUAGAUAAAUAAUUAGCG---CUACA----------------------UUUU-----------------------UGUAG---AACAGAACACGGCUUAUUUUU-----------------------
>CP001184.1_353627-353990
-------GUAAAA-AGCUAAUUGCUGCAUUUUUAA--------------------------------------AUAA-----AUGUAGAGGAAAGUCCGUG-CUCACACUA-AC-UGUGAU-GUUAGUAGUGUUUGU-GUAUGUA--UAAUUAAUAAAGCAUAGCA--UAGG--------------CGUA--UGACGGC--GAAU-UUUUUAA-GCUAAGUAA-UUUU--CUAUUAUAUGUUU-AAAAAUUC-ACAAA--GUGCCACAGAGACGA--UUAAUC-AA-----------------------GAAA------------------------UUG-AUGAGAUGAAACGUUGGUAAACCCCACAAGUGAGAAACCUAAAUUU--UGGUAAGGGAAU-C-UAAUU--UAGUAAAUU---AAGAAAUUAAAUUAGGA-UAGAAUAAAC-----------UUUA-----UUC--UAUAGAUAAAUAAUUAGCA---CUACA----------------------UUUU-----------------------UGUAG---AACAGAACACGGCUUAUUUUU-----------------------
>ABAW02000019.1_236603-236264
-------CAUUAC-AGACAGUCGCUGGCU--------------------------------------------AUAA-----AGCUAGAGGAAAGUCCAUG-CUCGCACGA-UC-UGUGAU-GAUCGUAGUGUUUGU-GCAGAAU--GAAUACAUAAGUUCUGGCA--GCUG--------A-----UUGC--UGACGGC--UGAG-GGAA--G-CCUAAGAC--UUCG------GUUAUGGU--GUACCUCUGUAAAA--GUGCCACAGAAACGAG-UCGUAU-CG-----------------------GAAA------------------------CGA-UACGAAUGGAACG--GGUAAACCCCGCAAGCGAGAAACCCAAAUU---UGGUAGGGGAAU-C-CACUA--AAGUGAAAC---GAAACGG--CGGUGGGA-CGUGC----------------AU-------GCA--CGUAGAUAAAUGACUGUCA---CUCAU----------------------AUAU-----------------------AUGAG---CACAGAACAUGGCUUAU-GUA-----------------------
>CP000408.1_396906-397270
-------AUUUUU-GGAUAAUCGCGUGGUAGUU----------------------------------------UUCU-----ACCAUGAGGAAAGUCCAUG-CUAGCACUG-GC-UGAGAU-GCCAGUAGUGUUUGU-GCUAGGC--GAAUCAAUAAGCCUAGGGA--CGCC-----CUUG-----GGCG--UUACGGC--GGUU-AAAA-UG-GCUAAGUC--UUUU------GAUAUGUCAGAGUAGAUC-UGAAA--GUGCCACAGUGACGAAGUUUUUA-UG-----------------------GAAA------------------------CGU-AAAAAAUGGAACG-CGGUAAACCCCUCAAGCUAGCAACCCAAACUU--UGGUCGGGGCAU-G-GGAUG--GAUGGAAAU---GAACAGA--AAUCCUGA-CUGU-----------------UUAG------AC--AGUAGACAGAUGAUUAUCG---AAGGU--G-GUAGAAC-----------CUAG-------------------UACCACUGG---AACAAAACAUGGCUUACAGAA-----------------------
>CP001617.1_1571725-1572099
-------AAUUCU-GGGUAAUCGCGGUCGGCUU----------------------------------------AUGU-----CGGCUGAGGAAGGUCCAUG-CUCGCACAA-GC-UGCGAU-GCUUGUAGUGUUCGU-GCUCGGU--GAAAAAAUAAGCCGGGGUA--CCGA-----UUUA-----UCGG--UAACGGC--GGAA-AAAA-CG-GCUAAGGC--UUCG------GCUAUGCCCGAGUAUUCC-UGAAAA-GUGCCACAGUGACGAUACUCAAU-UG-----------------------GAAA------------------------CGG-UUGAGUUGGAACG-CGGUAAACCCCACGAGCGGGCAACCCAAACUA--CGGUAGGGGCGC-U-UCACA--UAAGGAACU---GAACUAAA-UGUGGGGG-GAGAUU---------------AGUA-----AUC--UCGAGAUAGAUGAUUACCG---CCUAG--U-UAAC--------------AGAC-----------CCUGUACUUUAACUAGG---UACAAAACAUGGCCUACAGGA-----------------------
>FQ377874.1_508470-508809
-------UUUAUU-AGUCAAUCGCUGUAUUUGAAA--------------------------------------AAGA-----AUAUAGAGGAAACUCCACG-CUUACACAA-UC-UGUGAU-GAUUGUAGUGUUUAU-GCUAAAU--GAAAAAAUAAAUUUAGGCA--GUAA-----GUAA-----UUAC--UGACGGC----UU-AACU-AA-CCUAAGGC--UUU-------GCUAUGGUGAUGUUA----UUAAA--GUGCCACAGAGACGAAU---AAA-GA-----------------------GAAA------------------------UCU-U-GAAAUGGAACG-CGGUAAACCCCAUAAGUAAGAAACUCAAGUUU--UGGUAGAGGAAU-C-UGAUU--AAGAGAAUA---AGAAUUAA-AAUCAGAA-GUUA-----------------UUAU------UA--ACUAGAUAGAUGAUUGACG---CU-------------------------GAAA--------------------------AG---UACAAAACGUGGGUUAUAGAU-----------------------

      

Rfam family RF00011 maps to these 104 chains: 1NBS|1|A, 1NBS|1|B, 2A64|1|A, 3DHS|1|A, 9OV3|1|A, 9OV6|1|A, 9OV7|1|A, 9OV8|1|A, 9OVB|1|A, 9OVC|1|A, 9OWJ|1|A, 9OWK|1|A, 9OWL|1|A, 9OWM|1|A, 9OWN|1|A, 9OWO|1|A, 9OWP|1|A, 9OWQ|1|A, 9OWS|1|A, 9OWT|1|A, 9OWU|1|A, 9OWV|1|A, 9OWW|1|A, 9OWX|1|A, 9OWY|1|A, 9OY2|1|A, 9OY3|1|A, 9OY4|1|A, 9ZDV|1|A, 9ZF2|1|A, 9ZF3|1|A, 9ZF5|1|A, 9ZF9|1|A, 9ZFC|1|A, 9ZFD|1|A, 9ZGM|1|A, 9ZGN|1|A, 9ZGO|1|A, 9ZGP|1|A, 9ZGQ|1|A, 9ZGR|1|A, 9ZGS|1|A, 9ZGT|1|A, 9ZGU|1|A, 9ZGV|1|A, 9ZGW|1|A, 9ZGX|1|A, 9ZGY|1|A, 9ZGZ|1|A, 9ZH0|1|A, 9ZH1|1|A, 9ZH2|1|A, 9ZH5|1|A, 9ZH7|1|A, 9ZH9|1|A, 9ZHA|1|A, 9ZHB|1|A, 9ZHC|1|A, 9ZHD|1|A, 9ZHE|1|A, 9ZHF|1|A, 9ZHG|1|A, 9ZHI|1|A, 9ZHJ|1|A, 9ZHK|1|A, 9ZHL|1|A, 9ZHO|1|A, 9ZHP|1|A, 9ZHR|1|A, 9ZHS|1|A, 9ZHT|1|A, 9ZHU|1|A, 9ZHV|1|A, 9ZHW|1|A, 9ZHX|1|A, 9ZHZ|1|A, 9ZI0|1|A, 9ZI2|1|A, 9ZI3|1|A, 9ZI4|1|A, 9ZI5|1|A, 9ZI6|1|A, 9ZI7|1|A, 9ZI8|1|A, 9ZI9|1|A, 9ZIB|1|A, 9ZIC|1|A, 9ZID|1|A, 9ZIE|1|A, 9ZIF|1|A, 9ZIG|1|A, 9ZIH|1|A, 9ZII|1|A, 9ZIJ|1|A, 9ZIK|1|A, 9ZIL|1|A, 9ZIM|1|A, 9ZIN|1|A, 9ZIU|1|A, 9ZIV|1|A, 9ZIW|1|A, 9ZIX|1|A, 9ZIY|1|A, 9ZIZ|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Rfam family RF00011 is part of clan CL00002, which includes Rfam families RF00009, RF00373, RF02357, RF01577, RF00011, RF00010, RF00030 .
There are 130 chains in PDB that we map to these Rfam families: 1NBS|1|A, 1NBS|1|B, 1U9S|1|A, 2A2E|1|A, 2A64|1|A, 3DHS|1|A, 3OK7|1|B, 3OKB|1|B, 3Q1Q|1|B, 3Q1R|1|B, 6AGB|1|A, 6AH3|1|A, 6AHR|1|A, 6AHU|1|A, 6K0A|1|X, 6K0A|1|Y, 6K0B|1|X, 6K0B|1|Y, 6W6V|1|A, 7C79|1|A, 7C7A|1|A, 7DA7|1|C, 7DAS|1|C, 7UO0|1|B, 7UO1|1|B, 7UO2|1|B, 7UO5|1|B, 9OV3|1|A, 9OV6|1|A, 9OV7|1|A, 9OV8|1|A, 9OVB|1|A, 9OVC|1|A, 9OWJ|1|A, 9OWK|1|A, 9OWL|1|A, 9OWM|1|A, 9OWN|1|A, 9OWO|1|A, 9OWP|1|A, 9OWQ|1|A, 9OWS|1|A, 9OWT|1|A, 9OWU|1|A, 9OWV|1|A, 9OWW|1|A, 9OWX|1|A, 9OWY|1|A, 9OY2|1|A, 9OY3|1|A, 9OY4|1|A, 9UH7|1|A, 9UH9|1|A, 9UHA|1|A, 9ZDV|1|A, 9ZF2|1|A, 9ZF3|1|A, 9ZF5|1|A, 9ZF9|1|A, 9ZFC|1|A, 9ZFD|1|A, 9ZGM|1|A, 9ZGN|1|A, 9ZGO|1|A, 9ZGP|1|A, 9ZGQ|1|A, 9ZGR|1|A, 9ZGS|1|A, 9ZGT|1|A, 9ZGU|1|A, 9ZGV|1|A, 9ZGW|1|A, 9ZGX|1|A, 9ZGY|1|A, 9ZGZ|1|A, 9ZH0|1|A, 9ZH1|1|A, 9ZH2|1|A, 9ZH5|1|A, 9ZH7|1|A, 9ZH9|1|A, 9ZHA|1|A, 9ZHB|1|A, 9ZHC|1|A, 9ZHD|1|A, 9ZHE|1|A, 9ZHF|1|A, 9ZHG|1|A, 9ZHI|1|A, 9ZHJ|1|A, 9ZHK|1|A, 9ZHL|1|A, 9ZHO|1|A, 9ZHP|1|A, 9ZHR|1|A, 9ZHS|1|A, 9ZHT|1|A, 9ZHU|1|A, 9ZHV|1|A, 9ZHW|1|A, 9ZHX|1|A, 9ZHZ|1|A, 9ZI0|1|A, 9ZI2|1|A, 9ZI3|1|A, 9ZI4|1|A, 9ZI5|1|A, 9ZI6|1|A, 9ZI7|1|A, 9ZI8|1|A, 9ZI9|1|A, 9ZIB|1|A, 9ZIC|1|A, 9ZID|1|A, 9ZIE|1|A, 9ZIF|1|A, 9ZIG|1|A, 9ZIH|1|A, 9ZII|1|A, 9ZIJ|1|A, 9ZIK|1|A, 9ZIL|1|A, 9ZIM|1|A, 9ZIN|1|A, 9ZIU|1|A, 9ZIV|1|A, 9ZIW|1|A, 9ZIX|1|A, 9ZIY|1|A, 9ZIZ|1|A . See them at RNA 3D Hub by filtering on Rfam family, clan, or chain.