3T1Y | Motifs

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_3T1Y_001	1/A/12:22	NA	NA
2	HL_3T1Y_002	1/A/78:84	NA	NA
3	HL_3T1Y_004	1/A/186:191	NA	NA
4	HL_3T1Y_005	1/A/207:211	NA	NA
5	HL_3T1Y_006	1/A/254:262	NA	NA
6	HL_3T1Y_009	1/A/337:342	NA	NA
7	HL_3T1Y_010	1/A/374:379	NA	NA
8	HL_3T1Y_011	1/A/414:419	NA	NA
9	HL_3T1Y_013	1/A/505:510	NA	NA
10	HL_3T1Y_014	1/A/600:606	NA	NA
11	HL_3T1Y_015	1/A/672:681	NA	NA
12	HL_3T1Y_017	1/A/769:779	NA	NA
13	HL_3T1Y_018	1/A/820:826	NA	NA
14	HL_3T1Y_020	1/A/874:879	NA	NA
15	HL_3T1Y_021	1/A/940:949	NA	NA
16	HL_3T1Y_022	1/A/990:995	NA	NA
17	HL_3T1Y_025	1/A/1071:1078	NA	NA
18	HL_3T1Y_026	1/A/1116:1122	NA	NA
19	HL_3T1Y_027	1/A/1147:1152	NA	NA
20	HL_3T1Y_028	1/A/1246:1251	NA	NA
21	HL_3T1Y_029	1/A/1295:1304	NA	NA
22	HL_3T1Y_031	1/A/1429:1434	NA	NA
23	HL_3T1Y_032	1/A/1492:1497	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_3T1Y_003	all high RSRZ	NA
2	HL_3T1Y_007	all high RSRZ	NA
3	HL_3T1Y_008	all high RSRZ	NA
4	HL_3T1Y_012	all high RSRZ	NA
5	HL_3T1Y_016	all high RSRZ	NA
6	HL_3T1Y_019	all high RSRZ	NA
7	HL_3T1Y_023	all high RSRZ	NA
8	HL_3T1Y_024	all high RSRZ	NA
9	HL_3T1Y_030	all high RSRZ	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_3T1Y_001	1/A/30:32, 1/A/535:536	NA	NA
2	IL_3T1Y_002	1/A/44:45, 1/A/391:393	NA	NA
3	IL_3T1Y_003	1/A/47:52, 1/A/354:356	NA	NA
4	IL_3T1Y_004	1/A/54:56, 1/A/351:352	NA	NA
5	IL_3T1Y_006	1/A/67:69, 1/A/93:95	NA	NA
6	IL_3T1Y_007	1/A/122:125, 1/A/226:227	NA	NA
7	IL_3T1Y_008	1/A/126:130, 1/A/222:225	NA	NA
8	IL_3T1Y_009	1/A/142:147, 1/A/162:168	NA	NA
9	IL_3T1Y_010	1/A/180:182, 1/A/195:197	NA	NA
10	IL_3T1Y_011	1/A/237:242, 1/A/272:279	NA	NA
11	IL_3T1Y_012	1/A/244:247, 1/A/269:270	NA	NA
12	IL_3T1Y_013	1/A/287:288, 1/A/299:303	NA	NA
13	IL_3T1Y_014	1/A/362:364, 1/A/387:388	NA	NA
14	IL_3T1Y_015	1/A/366:370, 1/A/384:385	NA	NA
15	IL_3T1Y_017	1/A/404:411, 1/A/422:428	NA	NA
16	IL_3T1Y_018	1/A/440:444, 1/A/467:472	NA	NA
17	IL_3T1Y_019	1/A/444:449, 1/A/461:467	NA	NA
18	IL_3T1Y_021	1/A/498:504, 1/A/511:519	NA	NA
19	IL_3T1Y_022	1/A/552:558, 1/A/857:858	NA	NA
20	IL_3T1Y_023	1/A/563:567, 1/A/740:744	NA	NA
21	IL_3T1Y_024	1/A/577:579, 1/A/627:628	NA	NA
22	IL_3T1Y_025	1/A/580:581, 1/A/623:626	NA	NA
23	IL_3T1Y_026	1/A/588:595, 1/A/611:616	NA	NA
24	IL_3T1Y_027	1/A/637:638, 1/A/734:737	NA	NA
25	IL_3T1Y_028	1/A/640:641, 1/A/730:732	NA	NA
26	IL_3T1Y_029	1/A/645:649, 1/A/723:726	NA	NA
27	IL_3T1Y_030	1/A/656:661, 1/A/695:700	NA	NA
28	IL_3T1Y_031	1/A/666:671, 1/A/682:690	NA	NA
29	IL_3T1Y_032	1/A/757:761, 1/A/787:788	NA	NA
30	IL_3T1Y_034	1/A/864:871, 1/A/882:887	NA	NA
31	IL_3T1Y_035	1/A/899:900, 1/A/1375:1377	NA	NA
32	IL_3T1Y_036	1/A/902:904, 1/A/1372:1373	NA	NA
33	IL_3T1Y_037	1/A/910:912, 1/A/1362:1366	NA	NA
34	IL_3T1Y_039	1/A/970:974, 1/A/1026:1027	NA	NA
35	IL_3T1Y_042	1/A/1034:1038, 1/A/1185:1187	NA	NA
36	IL_3T1Y_046	1/A/1106:1116, 1/A/1122:1131	NA	NA
37	IL_3T1Y_047	1/A/1140:1143, 1/A/1156:1162	NA	NA
38	IL_3T1Y_048	1/A/1228:1234, 1/A/1265:1271	NA	NA
39	IL_3T1Y_049	1/A/1236:1239, 1/A/1258:1263	NA	NA
40	IL_3T1Y_051	1/A/1241:1243, 1/A/1254:1255	NA	NA
41	IL_3T1Y_052	1/A/1284:1289, 1/A/1310:1315	NA	NA
42	IL_3T1Y_054	1/A/1383:1386, 1/A/1474:1478	NA	NA
43	IL_3T1Y_055	1/A/1387:1389, 1/A/1471:1473	NA	NA
44	IL_3T1Y_056	1/A/1389:1391, 1/A/1468:1471	NA	NA
45	IL_3T1Y_057	1/A/1394:1396, 1/A/1463:1465	NA	NA
46	IL_3T1Y_058	1/A/1398:1402, 1/A/1457:1461	NA	NA
47	IL_3T1Y_059	1/A/1405:1407, 1/A/1452:1454	NA	NA
48	IL_3T1Y_060	1/A/1413:1417, 1/A/1443:1446	NA	NA
49	IL_3T1Y_061	1/A/1417:1419, 1/A/1441:1443	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_3T1Y_005	all high RSRZ	NA
2	IL_3T1Y_016	all high RSRZ	NA
3	IL_3T1Y_020	all high RSRZ	NA
4	IL_3T1Y_033	all high RSRZ	NA
5	IL_3T1Y_038	all high RSRZ	NA
6	IL_3T1Y_040	complementary	NA
7	IL_3T1Y_041	all high RSRZ	NA
8	IL_3T1Y_043	all high RSRZ	NA
9	IL_3T1Y_044	all high RSRZ	NA
10	IL_3T1Y_045	all high RSRZ	NA
11	IL_3T1Y_050	all high RSRZ	NA
12	IL_3T1Y_053	all high RSRZ	NA
13	IL_3T1Y_062	all high RSRZ	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	J3_3T1Y_001	1/A/809:812, 1/A/834:838, 1/A/845:851	NA	NA
2	J3_3T1Y_002	1/A/913:916, 1/A/1325:1331, 1/A/1354:1361	NA	NA
3	J3_3T1Y_004	1/A/932:939, 1/A/950:961, 1/A/1202:1206	NA	NA
4	J3_3T1Y_005	1/A/967:970, 1/A/1027:1029, 1/A/1191:1196	NA	NA
5	J3_3T1Y_007	1/A/1045:1050, 1/A/1089:1095, 1/A/1168:1174	NA	NA
6	J3_3T1Y_008	1/A/1098:1100, 1/A/1137:1140, 1/A/1162:1165	NA	NA
7	J3_3T1Y_009	1/A/1218:1222, 1/A/1277:1284, 1/A/1315:1318	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_3T1Y_003	all high RSRZ	NA
2	J3_3T1Y_006	all high RSRZ	NA

3T1Y Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops