Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4B3T_0011/A/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4B3T_0041/A/189C:189HNo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_4B3T_0051/A/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_91104.1
HL_4B3T_0061/A/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4B3T_0071/A/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.2
HL_4B3T_0081/A/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4B3T_0101/A/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.2
HL_4B3T_0111/A/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4B3T_0121/A/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4B3T_0131/A/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_4B3T_0141/A/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4B3T_0151/A/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4B3T_0161/A/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4B3T_0171/A/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4B3T_0181/A/838:848No text annotation
Not in a motif group
homologous
HL_4LFB_018
HL_38927.2
HL_4B3T_0191/A/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.2
HL_4B3T_0201/A/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.2
HL_4B3T_0211/A/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4B3T_0221/A/1011:1018No text annotation
Not in a motif group
homologous
HL_6CZR_093
NA
HL_4B3T_0231/A/1030:1031No text annotation
Not in a motif group
homologous
HL_4LFB_023
NA
HL_4B3T_0241/A/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.2
HL_4B3T_0251/A/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4B3T_0261/A/1134:1140No text annotation
Not in a motif group
HL_4B3T_0271/A/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.2
HL_4B3T_0281/A/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.2
HL_4B3T_0291/A/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4B3T_0301/A/1356:1366No text annotation
Not in a motif group
HL_4B3T_0311/A/1445:1457UNCG
Not in a motif group
homologous
HL_4LFB_031
HL_03562.2
HL_4B3T_0321/A/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA

Problematic loops

#loop idProblemSequence
HL_4B3T_002No text annotation
HL_4B3T_003GNRA
HL_4B3T_009UNCG

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4B3T_0011/A/30:32,
1/A/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.3
IL_4B3T_0021/A/44:45,
1/A/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.3
IL_4B3T_0031/A/47:52,
1/A/359:361
No text annotation
Not in a motif group
homologous
IL_4LFB_003
IL_11178.1
IL_4B3T_0041/A/54:56,
1/A/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4B3T_0051/A/63:66,
1/A/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_4B3T_0061/A/67:69,
1/A/100:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_4B3T_0071/A/129:131,
1/A/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_4B3T_0081/A/132:136,
1/A/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4B3T_0091/A/148:153,
1/A/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_4B3T_0101/A/186:188,
1/A/189L:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_4B3T_0111/A/242:247,
1/A/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4B3T_0121/A/249:252,
1/A/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_4B3T_0131/A/292:293,
1/A/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_4B3T_0141/A/367:369,
1/A/392:393
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.14
IL_4B3T_0151/A/371:375,
1/A/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_4B3T_0161/A/375:376,
1/A/387:389
Single bulged G
Not in a motif group
homologous
IL_4LFB_016
IL_00225.3
IL_4B3T_0171/A/409:416,
1/A/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4B3T_0181/A/446:450,
1/A/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4LFB_018
IL_88269.3
IL_4B3T_0191/A/450:455,
1/A/476:483
No text annotation
Not in a motif group
homologous
IL_4LFB_019
IL_11882.1
IL_4B3T_0201/A/504:511,
1/A/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_4B3T_0211/A/515:521,
1/A/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4B3T_0221/A/569:575,
1/A/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4B3T_0231/A/580:584,
1/A/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_4B3T_0241/A/594:596,
1/A/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.2
IL_4B3T_0251/A/597:598,
1/A/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_4B3T_0261/A/605:612,
1/A/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_4B3T_0271/A/654:655,
1/A/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_4B3T_0281/A/657:658,
1/A/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.2
IL_4B3T_0291/A/662:666,
1/A/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_4B3T_0301/A/673:678,
1/A/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_4B3T_0311/A/683:688,
1/A/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4B3T_0321/A/774:778,
1/A/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_4B3T_0331/A/779:783,
1/A/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_4B3T_0341/A/887:894,
1/A/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4B3T_0351/A/922:923,
1/A/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.3
IL_4B3T_0361/A/925:927,
1/A/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.3
IL_4B3T_0371/A/933:935,
1/A/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_4B3T_0381/A/953:954,
1/A/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.2
IL_4B3T_0391/A/993:998,
1/A/1043:1045
No text annotation
Not in a motif group
IL_4B3T_0401/A/999:1003,
1/A/1038:1042
No text annotation
Not in a motif group
IL_4B3T_0411/A/1048:1050,
1/A/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.14
IL_4B3T_0421/A/1052:1056,
1/A/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4B3T_0431/A/1057:1058,
1/A/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_93353.1
IL_4B3T_0441/A/1060:1061,
1/A/1195:1197
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.14
IL_4B3T_0451/A/1061:1063,
1/A/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_4B3T_0461/A/1124:1128,
1/A/1143:1149
No text annotation
Not in a motif group
homologous
IL_4LFB_048
IL_85222.1
IL_4B3T_0471/A/1128:1132,
1/A/1142:1143
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_4B3T_0481/A/1158:1161,
1/A/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_4B3T_0491/A/1247:1253,
1/A/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_4B3T_0501/A/1255:1258,
1/A/1277:1282
No text annotation
Not in a motif group
IL_4B3T_0511/A/1259:1260,
1/A/1274:1276
Not an internal loop
Not in a motif group
geometric
IL_4LFB_053
IL_93353.1
IL_4B3T_0521/A/1260:1262,
1/A/1273:1274
Minor groove platform
Not in a motif group
homologous
IL_4LFB_054
IL_93353.1
IL_4B3T_0531/A/1303:1308,
1/A/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_4B3T_0541/A/1399:1401,
1/A/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_4B3T_0551/A/1401:1404,
1/A/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4B3T_0561/A/1405:1407,
1/A/1494:1496
No text annotation
Not in a motif group
geometric
IL_3GM7_005
IL_95997.1
IL_4B3T_0571/A/1407:1409,
1/A/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_4B3T_0581/A/1412:1414,
1/A/1486:1488
No text annotation
Not in a motif group
homologous
IL_4LFB_059
IL_95997.1
IL_4B3T_0591/A/1416:1419,
1/A/1481:1484
Double sheared
Not in a motif group
homologous
IL_4LFB_060
IL_09705.9
IL_4B3T_0601/A/1431:1435,
1/A/1466:1469
UAA/GAN variation
Not in a motif group
homologous
IL_4LFB_062
IL_07235.1
IL_4B3T_0611/A/1435:1437,
1/A/1464:1466
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_95997.1
IL_4B3T_0621/A/1440:1443,
1/A/1459:1461
No text annotation
Not in a motif group
homologous
IL_4LFB_064
IL_92788.2

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4B3T_0011/A/826:829,
1/A/857:861,
1/A/868:874
No text annotation
Not in a motif group
homologous
J3_4LFB_001
NA
J3_4B3T_0021/A/936:939,
1/A/1344:1350,
1/A/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_4B3T_0031/A/943:946,
1/A/1235:1237,
1/A/1337:1340
No text annotation
Not in a motif group
J3_4B3T_0041/A/955:962,
1/A/973:984,
1/A/1221:1225
No text annotation
Not in a motif group
J3_4B3T_0051/A/990:993,
1/A/1045:1047,
1/A/1210:1215
No text annotation
Not in a motif group
J3_4B3T_0061/A/1003:1006,
1/A/1023:1027,
1/A/1034:1038
No text annotation
Not in a motif group
J3_4B3T_0071/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193
No text annotation
Not in a motif group
J3_4B3T_0081/A/1116:1118,
1/A/1155:1158,
1/A/1181:1184
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_4B3T_0091/A/1237:1241,
1/A/1296:1303,
1/A/1334:1337
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA

Problematic loops

No problematic loops


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