1N36 | Motifs

Valid loops

#	loop id	location	motif
1	IL_1N36_001 ➜	1/A/28:32,1/A/552:555	NA
2	IL_1N36_002 ➜	1/A/44:45,1/A/396:398	NA
3	IL_1N36_003 ➜	1/A/47:52,1/A/359:361	NA
4	IL_1N36_004 ➜	1/A/63:66,1/A/103:104	NA
5	IL_1N36_005 ➜	1/A/67:69,1/A/99:102	NA
6	IL_1N36_006 ➜	1/A/69:76,1/A/93:99	NA
7	IL_1N36_007 ➜	1/A/129:131,1/A/231:232	NA
8	IL_1N36_008 ➜	1/A/132:136,1/A/227:230	NA
9	IL_1N36_010 ➜	1/A/147:153,1/A/168:175	NA
10	IL_1N36_011 ➜	1/A/186:188,1/A/190K:191	NA
11	IL_1N36_012 ➜	1/A/242:247,1/A/277:284	NA
12	IL_1N36_013 ➜	1/A/249:253,1/A/273:275	NA
13	IL_1N36_015 ➜	1/A/292:294,1/A/303:308	NA
14	IL_1N36_016 ➜	1/A/371:375,1/A/389:390	NA
15	IL_1N36_017 ➜	1/A/409:416,1/A/427:433	NA
16	IL_1N36_018 ➜	1/A/504:511,1/A/540:541	NA
17	IL_1N36_019 ➜	1/A/515:521,1/A/528:536	NA
18	IL_1N36_020 ➜	1/A/569:575,1/A/880:881	NA
19	IL_1N36_021 ➜	1/A/580:584,1/A/757:761	NA
20	IL_1N36_023 ➜	1/A/594:596,1/A/644:645	NA
21	IL_1N36_024 ➜	1/A/597:598,1/A/640:643	NA
22	IL_1N36_025 ➜	1/A/603:605,1/A/633:635	NA
23	IL_1N36_026 ➜	1/A/605:612,1/A/628:633	NA
24	IL_1N36_027 ➜	1/A/654:655,1/A/751:754	NA
25	IL_1N36_028 ➜	1/A/656:658,1/A/747:750	NA
26	IL_1N36_029 ➜	1/A/662:666,1/A/740:743	NA
27	IL_1N36_030 ➜	1/A/673:679,1/A/711:717	NA
28	IL_1N36_031 ➜	1/A/683:688,1/A/699:707	NA
29	IL_1N36_032 ➜	1/A/774:778,1/A/804:805	NA
30	IL_1N36_033 ➜	1/A/779:783,1/A/799:803	NA
31	IL_1N36_034 ➜	1/A/887:894,1/A/905:910	NA
32	IL_1N36_035 ➜	1/A/921:924,1/A/1392:1396	NA
33	IL_1N36_036 ➜	1/A/925:927,1/A/1390:1391	NA
34	IL_1N36_037 ➜	1/A/933:935,1/A/1380:1384	NA
35	IL_1N36_038 ➜	1/A/949:951,1/A/1230:1232	NA
36	IL_1N36_039 ➜	1/A/952:954,1/A/1226:1229	NA
37	IL_1N36_040 ➜	1/A/1009:1012,1/A/1017:1020	NA
38	IL_1N36_041 ➜	1/A/1052:1056,1/A/1204:1206	NA
39	IL_1N36_042 ➜	1/A/1057:1058,1/A/1199:1203	NA
40	IL_1N36_043 ➜	1/A/1058:1063,1/A/1193:1199	NA
41	IL_1N36_044 ➜	1/A/1120:1128,1/A/1143:1153	NA
42	IL_1N36_045 ➜	1/A/1128:1134,1/A/1140:1143	NA
43	IL_1N36_048 ➜	1/A/1246:1253,1/A/1284:1291	NA
44	IL_1N36_049 ➜	1/A/1253:1258,1/A/1277:1284	NA
45	IL_1N36_050 ➜	1/A/1258:1262,1/A/1273:1277	NA
46	IL_1N36_052 ➜	1/A/1303:1308,1/A/1329:1334	NA
47	IL_1N36_054 ➜	1/A/1399:1401,1/A/1501:1504	NA
48	IL_1N36_055 ➜	1/A/1401:1404,1/A/1497:1501	NA
49	IL_1N36_056 ➜	1/A/1405:1407,1/A/1494:1496	NA
50	IL_1N36_057 ➜	1/A/1407:1409,1/A/1491:1494	NA
51	IL_1N36_059 ➜	1/A/1412:1414,1/A/1486:1488	NA
52	IL_1N36_060 ➜	1/A/1416:1419,1/A/1481:1484	NA
53	IL_1N36_061 ➜	1/A/1419:1422,1/A/1479:1481	NA
54	IL_1N36_062 ➜	1/A/1422:1423,1/A/1477:1479	NA
55	IL_1N36_064 ➜	1/A/1431:1435,1/A/1466:1469	NA
56	IL_1N36_065 ➜	1/A/1435:1438,1/A/1463:1466	NA
57	IL_1N36_066 ➜	1/A/1440:1447,1/A/1459:1461	NA
58	IL_1N36_067 ➜	1/A/1512:1514,1/A/1521:1523	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_1N36_009 ➜	complementary	CCG,CGG
2	IL_1N36_014 ➜	complementary	GCC,GGC
3	IL_1N36_022 ➜	complementary	CUG,CAG
4	IL_1N36_046 ➜	complementary	CCCG,CGGG
5	IL_1N36_047 ➜	complementary	CCCA,UGGG
6	IL_1N36_051 ➜	complementary	CCCG,CGGG
7	IL_1N36_053 ➜	complementary	GGU,ACC
8	IL_1N36_058 ➜	complementary	CGC,GCG
9	IL_1N36_063 ➜	complementary	CUA,UAG

Valid loops

#	loop id	location	motif
1	HL_1N36_001 ➜	1/A/12:22	NA
2	HL_1N36_003 ➜	1/A/158:163	NA
3	HL_1N36_004 ➜	1/A/190A:190H	NA
4	HL_1N36_005 ➜	1/A/201:216	NA
5	HL_1N36_006 ➜	1/A/259:267	NA
6	HL_1N36_007 ➜	1/A/296:301	NA
7	HL_1N36_008 ➜	1/A/320:333	NA
8	HL_1N36_010 ➜	1/A/375:389	NA
9	HL_1N36_011 ➜	1/A/416:427	NA
10	HL_1N36_012 ➜	1/A/458:474	NA
11	HL_1N36_013 ➜	1/A/522:527	NA
12	HL_1N36_014 ➜	1/A/616:624	NA
13	HL_1N36_015 ➜	1/A/689:698	NA
14	HL_1N36_016 ➜	1/A/726:731	NA
15	HL_1N36_017 ➜	1/A/786:796	NA
16	HL_1N36_018 ➜	1/A/837:849	NA
17	HL_1N36_019 ➜	1/A/862:867	NA
18	HL_1N36_020 ➜	1/A/897:902	NA
19	HL_1N36_021 ➜	1/A/963:972	NA
20	HL_1N36_022 ➜	1/A/1012:1017	NA
21	HL_1N36_024 ➜	1/A/1076:1081	NA
22	HL_1N36_025 ➜	1/A/1089:1096	NA
23	HL_1N36_026 ➜	1/A/1134:1140	NA
24	HL_1N36_027 ➜	1/A/1164:1172	NA
25	HL_1N36_029 ➜	1/A/1314:1323	NA
26	HL_1N36_031 ➜	1/A/1449:1454	NA
27	HL_1N36_032 ➜	1/A/1515:1520	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_1N36_002 ➜	missing nts	79, 80, 81, 82, 83, 84, 88, 89, 90
2	HL_1N36_009 ➜	missing nts	341, 342, 343, 344, 345, 346, 347, 348
3	HL_1N36_023 ➜	missing nts	1029, 1030, 1030, 1030, 1030, 1030, 1031, 1032
4	HL_1N36_028 ➜	all high RSRZ	1265, 1266, 1267, 1268, 1269, 1270
5	HL_1N36_030 ➜	missing nts	1356, 1357, 1358, 1359, 1360, 1361, 1361, 1362, 1363, 1364, 1365, 1366

Valid loops

#	loop id	location	motif
1	J3_1N36_001 ➜	1/A/826:829,1/A/857:861,1/A/868:874	NA
2	J3_1N36_002 ➜	1/A/943:946,1/A/1235:1237,1/A/1337:1340	NA
3	J3_1N36_003 ➜	1/A/955:962,1/A/973:985,1/A/1220:1225	NA
4	J3_1N36_004 ➜	1/A/1063:1068,1/A/1107:1113,1/A/1187:1193	NA
5	J3_1N36_005 ➜	1/A/1115:1118,1/A/1155:1161,1/A/1175:1185	NA
6	J3_1N36_006 ➜	1/A/1237:1241,1/A/1296:1303,1/A/1334:1337	NA

Problematic loops

No problematic loops