1N36 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/A/12:22 | NA | NA | ||
| 1/A/158:163 | NA | NA | ||
| 1/A/190A:190H | NA | NA | ||
| 1/A/201:216 | NA | NA | ||
| 1/A/259:267 | NA | NA | ||
| 1/A/296:301 | NA | NA | ||
| 1/A/320:333 | NA | NA | ||
| 1/A/375:389 | NA | NA | ||
| 1/A/416:427 | NA | NA | ||
| 1/A/458:474 | NA | NA | ||
| 1/A/522:527 | NA | NA | ||
| 1/A/616:624 | NA | NA | ||
| 1/A/689:698 | NA | NA | ||
| 1/A/726:731 | NA | NA | ||
| 1/A/786:796 | NA | NA | ||
| 1/A/837:849 | NA | NA | ||
| 1/A/862:867 | NA | NA | ||
| 1/A/897:902 | NA | NA | ||
| 1/A/963:972 | NA | NA | ||
| 1/A/1012:1017 | NA | NA | ||
| 1/A/1076:1081 | NA | NA | ||
| 1/A/1089:1096 | NA | NA | ||
| 1/A/1134:1140 | NA | NA | ||
| 1/A/1164:1172 | NA | NA | ||
| 1/A/1314:1323 | NA | NA | ||
| 1/A/1449:1454 | NA | NA | ||
| 1/A/1515:1520 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1N36_002 | NA | ||
| HL_1N36_009 | NA | ||
| HL_1N36_023 | NA | ||
| HL_1N36_028 | NA | ||
| HL_1N36_030 | NA |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/A/28:32, 1/A/552:555 | NA | NA | ||
| 1/A/44:45, 1/A/396:398 | NA | NA | ||
| 1/A/47:52, 1/A/359:361 | NA | NA | ||
| 1/A/63:66, 1/A/103:104 | NA | NA | ||
| 1/A/67:69, 1/A/99:102 | NA | NA | ||
| 1/A/69:76, 1/A/93:99 | NA | NA | ||
| 1/A/129:131, 1/A/231:232 | NA | NA | ||
| 1/A/132:136, 1/A/227:230 | NA | NA | ||
| 1/A/147:153, 1/A/168:175 | NA | NA | ||
| 1/A/186:188, 1/A/190K:191 | NA | NA | ||
| 1/A/242:247, 1/A/277:284 | NA | NA | ||
| 1/A/249:253, 1/A/273:275 | NA | NA | ||
| 1/A/292:294, 1/A/303:308 | NA | NA | ||
| 1/A/371:375, 1/A/389:390 | NA | NA | ||
| 1/A/409:416, 1/A/427:433 | NA | NA | ||
| 1/A/504:511, 1/A/540:541 | NA | NA | ||
| 1/A/515:521, 1/A/528:536 | NA | NA | ||
| 1/A/569:575, 1/A/880:881 | NA | NA | ||
| 1/A/580:584, 1/A/757:761 | NA | NA | ||
| 1/A/594:596, 1/A/644:645 | NA | NA | ||
| 1/A/597:598, 1/A/640:643 | NA | NA | ||
| 1/A/603:605, 1/A/633:635 | NA | NA | ||
| 1/A/605:612, 1/A/628:633 | NA | NA | ||
| 1/A/654:655, 1/A/751:754 | NA | NA | ||
| 1/A/656:658, 1/A/747:750 | NA | NA | ||
| 1/A/662:666, 1/A/740:743 | NA | NA | ||
| 1/A/673:679, 1/A/711:717 | NA | NA | ||
| 1/A/683:688, 1/A/699:707 | NA | NA | ||
| 1/A/774:778, 1/A/804:805 | NA | NA | ||
| 1/A/779:783, 1/A/799:803 | NA | NA | ||
| 1/A/887:894, 1/A/905:910 | NA | NA | ||
| 1/A/921:924, 1/A/1392:1396 | NA | NA | ||
| 1/A/925:927, 1/A/1390:1391 | NA | NA | ||
| 1/A/933:935, 1/A/1380:1384 | NA | NA | ||
| 1/A/949:951, 1/A/1230:1232 | NA | NA | ||
| 1/A/952:954, 1/A/1226:1229 | NA | NA | ||
| 1/A/1009:1012, 1/A/1017:1020 | NA | NA | ||
| 1/A/1052:1056, 1/A/1204:1206 | NA | NA | ||
| 1/A/1057:1058, 1/A/1199:1203 | NA | NA | ||
| 1/A/1058:1063, 1/A/1193:1199 | NA | NA | ||
| 1/A/1120:1128, 1/A/1143:1153 | NA | NA | ||
| 1/A/1128:1134, 1/A/1140:1143 | NA | NA | ||
| 1/A/1246:1253, 1/A/1284:1291 | NA | NA | ||
| 1/A/1253:1258, 1/A/1277:1284 | NA | NA | ||
| 1/A/1258:1262, 1/A/1273:1277 | NA | NA | ||
| 1/A/1303:1308, 1/A/1329:1334 | NA | NA | ||
| 1/A/1399:1401, 1/A/1501:1504 | NA | NA | ||
| 1/A/1401:1404, 1/A/1497:1501 | NA | NA | ||
| 1/A/1405:1407, 1/A/1494:1496 | NA | NA | ||
| 1/A/1407:1409, 1/A/1491:1494 | NA | NA | ||
| 1/A/1412:1414, 1/A/1486:1488 | NA | NA | ||
| 1/A/1416:1419, 1/A/1481:1484 | NA | NA | ||
| 1/A/1419:1422, 1/A/1479:1481 | NA | NA | ||
| 1/A/1422:1423, 1/A/1477:1479 | NA | NA | ||
| 1/A/1431:1435, 1/A/1466:1469 | NA | NA | ||
| 1/A/1435:1438, 1/A/1463:1466 | NA | NA | ||
| 1/A/1440:1447, 1/A/1459:1461 | NA | NA | ||
| 1/A/1512:1514, 1/A/1521:1523 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1N36_009 | NA | ||
| IL_1N36_014 | NA | ||
| IL_1N36_022 | NA | ||
| IL_1N36_046 | NA | ||
| IL_1N36_047 | NA | ||
| IL_1N36_051 | NA | ||
| IL_1N36_053 | NA | ||
| IL_1N36_058 | NA | ||
| IL_1N36_063 | NA |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/A/826:829, 1/A/857:861, 1/A/868:874 | NA | NA | ||
| 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | NA | NA | ||
| 1/A/955:962, 1/A/973:985, 1/A/1220:1225 | NA | NA | ||
| 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | NA | NA | ||
| 1/A/1115:1118, 1/A/1155:1161, 1/A/1175:1185 | NA | NA | ||
| 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | NA | NA |
Problematic loops
No problematic loops
Coloring options: