4K0K Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/A/31:33,1/A/536:537 | NA |
2 | ➜ | 1/A/45:46,1/A/392:394 | NA |
3 | ➜ | 1/A/48:53,1/A/355:357 | NA |
4 | ➜ | 1/A/55:57,1/A/352:353 | NA |
5 | ➜ | 1/A/64:67,1/A/97:98 | NA |
6 | ➜ | 1/A/68:70,1/A/94:96 | NA |
7 | ➜ | 1/A/76:78,1/A/86:88 | NA |
8 | ➜ | 1/A/123:126,1/A/227:228 | NA |
9 | ➜ | 1/A/127:131,1/A/223:226 | NA |
10 | ➜ | 1/A/143:148,1/A/163:169 | NA |
11 | ➜ | 1/A/181:183,1/A/196:198 | NA |
12 | ➜ | 1/A/238:243,1/A/273:280 | NA |
13 | ➜ | 1/A/245:248,1/A/270:271 | NA |
14 | ➜ | 1/A/288:289,1/A/300:304 | NA |
15 | ➜ | 1/A/363:365,1/A/388:389 | NA |
16 | ➜ | 1/A/367:371,1/A/385:386 | NA |
17 | ➜ | 1/A/371:372,1/A/383:385 | NA |
18 | ➜ | 1/A/405:412,1/A/423:429 | NA |
19 | ➜ | 1/A/441:445,1/A/468:473 | NA |
20 | ➜ | 1/A/445:450,1/A/462:468 | NA |
21 | ➜ | 1/A/488:495,1/A/524:525 | NA |
22 | ➜ | 1/A/499:505,1/A/512:520 | NA |
23 | ➜ | 1/A/553:559,1/A/858:859 | NA |
24 | ➜ | 1/A/564:568,1/A/741:745 | NA |
25 | ➜ | 1/A/578:580,1/A/628:629 | NA |
26 | ➜ | 1/A/581:582,1/A/624:627 | NA |
27 | ➜ | 1/A/589:596,1/A/612:617 | NA |
28 | ➜ | 1/A/638:639,1/A/735:738 | NA |
29 | ➜ | 1/A/641:642,1/A/731:733 | NA |
30 | ➜ | 1/A/646:650,1/A/724:727 | NA |
31 | ➜ | 1/A/657:662,1/A/696:701 | NA |
32 | ➜ | 1/A/667:672,1/A/683:691 | NA |
33 | ➜ | 1/A/758:762,1/A/788:789 | NA |
34 | ➜ | 1/A/763:767,1/A/783:787 | NA |
35 | ➜ | 1/A/865:872,1/A/883:888 | NA |
36 | ➜ | 1/A/900:901,1/A/1376:1378 | NA |
37 | ➜ | 1/A/903:905,1/A/1373:1374 | NA |
38 | ➜ | 1/A/911:913,1/A/1363:1367 | NA |
39 | ➜ | 1/A/931:932,1/A/1208:1210 | NA |
40 | ➜ | 1/A/971:975,1/A/1027:1028 | NA |
41 | ➜ | 1/A/978:985,1/A/1002:1024 | NA |
42 | ➜ | 1/A/989:991,1/A/996:998 | NA |
43 | ➜ | 1/A/1031:1033,1/A/1190:1191 | NA |
44 | ➜ | 1/A/1035:1039,1/A/1186:1188 | NA |
45 | ➜ | 1/A/1040:1041,1/A/1181:1185 | NA |
46 | ➜ | 1/A/1043:1044,1/A/1177:1179 | NA |
47 | ➜ | 1/A/1044:1046,1/A/1175:1177 | NA |
48 | ➜ | 1/A/1106:1111,1/A/1126:1133 | NA |
49 | ➜ | 1/A/1141:1144,1/A/1157:1163 | NA |
50 | ➜ | 1/A/1229:1235,1/A/1266:1272 | NA |
51 | ➜ | 1/A/1237:1240,1/A/1259:1264 | NA |
52 | ➜ | 1/A/1241:1242,1/A/1256:1258 | NA |
53 | ➜ | 1/A/1242:1244,1/A/1255:1256 | NA |
54 | ➜ | 1/A/1285:1290,1/A/1311:1316 | NA |
55 | ➜ | 1/A/1382:1384,1/A/1479:1482 | NA |
56 | ➜ | 1/A/1384:1387,1/A/1475:1479 | NA |
57 | ➜ | 1/A/1388:1390,1/A/1472:1474 | NA |
58 | ➜ | 1/A/1390:1392,1/A/1469:1472 | NA |
59 | ➜ | 1/A/1395:1397,1/A/1464:1466 | NA |
60 | ➜ | 1/A/1399:1402,1/A/1459:1462 | NA |
61 | ➜ | 1/A/1414:1418,1/A/1444:1447 | NA |
62 | ➜ | 1/A/1418:1420,1/A/1442:1444 | NA |
63 | ➜ | 1/A/1423:1428,1/A/1437:1439 | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/A/13:23 | NA |
2 | ➜ | 1/A/78:86 | NA |
3 | ➜ | 1/A/153:158 | NA |
4 | ➜ | 1/A/187:192 | NA |
5 | ➜ | 1/A/208:212 | NA |
6 | ➜ | 1/A/255:263 | NA |
7 | ➜ | 1/A/292:297 | NA |
8 | ➜ | 1/A/316:329 | NA |
9 | ➜ | 1/A/338:343 | NA |
10 | ➜ | 1/A/375:380 | NA |
11 | ➜ | 1/A/415:420 | NA |
12 | ➜ | 1/A/453:459 | NA |
13 | ➜ | 1/A/506:511 | NA |
14 | ➜ | 1/A/601:607 | NA |
15 | ➜ | 1/A/673:682 | NA |
16 | ➜ | 1/A/710:715 | NA |
17 | ➜ | 1/A/770:780 | NA |
18 | ➜ | 1/A/821:827 | NA |
19 | ➜ | 1/A/840:845 | NA |
20 | ➜ | 1/A/875:880 | NA |
21 | ➜ | 1/A/941:950 | NA |
22 | ➜ | 1/A/991:996 | NA |
23 | ➜ | 1/A/1059:1064 | NA |
24 | ➜ | 1/A/1072:1079 | NA |
25 | ➜ | 1/A/1111:1126 | NA |
26 | ➜ | 1/A/1148:1153 | NA |
27 | ➜ | 1/A/1247:1252 | NA |
28 | ➜ | 1/A/1296:1305 | NA |
29 | ➜ | 1/A/1338:1349 | NA |
30 | ➜ | 1/A/1430:1435 | NA |
31 | ➜ | 1/A/1493:1498 | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/A/810:813,1/A/835:839,1/A/846:852 | NA |
2 | ➜ | 1/A/914:917,1/A/1326:1332,1/A/1355:1362 | NA |
3 | ➜ | 1/A/921:924,1/A/1217:1219,1/A/1319:1322 | NA |
4 | ➜ | 1/A/933:940,1/A/951:962,1/A/1203:1207 | NA |
5 | ➜ | 1/A/968:971,1/A/1028:1030,1/A/1192:1197 | NA |
6 | ➜ | 1/A/1046:1051,1/A/1090:1096,1/A/1169:1175 | NA |
7 | ➜ | 1/A/1099:1101,1/A/1138:1141,1/A/1163:1166 | NA |
8 | ➜ | 1/A/1219:1223,1/A/1278:1285,1/A/1316:1319 | NA |
Problematic loops
No problematic loops
Coloring options: