RNA 3D Hub //

6ELZ Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ELZ_0011/1/38:45No text annotation
Not in a motif group		homologous
HL_8C3A_001
HL_06192.2
HL_6ELZ_0021/1/69:74No text annotation
Not in a motif group		homologous
HL_8C3A_002
HL_02862.2
HL_6ELZ_0031/1/90:96No text annotation
Not in a motif group		homologous
HL_8C3A_003
HL_67216.7
HL_6ELZ_0041/1/132:136No text annotation
Not in a motif group		homologous
HL_8C3A_004
HL_98426.1
HL_6ELZ_0051/1/194:201No text annotation
Not in a motif group		homologous
HL_8C3A_005
HL_89380.2
HL_6ELZ_0061/1/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_6ELZ_0071/1/216:224No text annotation
Not in a motif group		homologous
HL_8C3A_007
HL_08002.8
HL_6ELZ_0081/1/278:287No text annotation
Not in a motif group		homologous
HL_5TBW_008
HL_71554.2
HL_6ELZ_0101/1/357:362Other HL
Not in a motif group		homologous
HL_5TBW_010
HL_42097.1
HL_6ELZ_0111/1/382:387No text annotation
Not in a motif group		homologous
HL_8C3A_011
HL_42097.1
HL_6ELZ_0121/1/542:549No text annotation
Not in a motif group
HL_6ELZ_0131/1/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_6ELZ_0141/1/640:649No text annotation
Not in a motif group
HL_6ELZ_0151/1/686:694No text annotation
Not in a motif group		homologous
HL_8C3A_015
HL_03345.1
HL_6ELZ_0161/1/707:712No text annotation
Not in a motif group		homologous
HL_8C3A_016
HL_42097.1
HL_6ELZ_0171/1/732:737GNRA
Not in a motif group		homologous
HL_5TBW_017
HL_42097.1
HL_6ELZ_0221/1/958:964No text annotation
Not in a motif group
HL_6ELZ_0241/1/1126:1132Other HL
Not in a motif group		geometric
HL_4V9F_039
HL_27930.1
HL_6ELZ_0251/1/1148:1155No text annotation
Not in a motif group		homologous
HL_5TBW_026
HL_64430.2
HL_6ELZ_0291/1/1403:1408No text annotation
Not in a motif group		homologous
HL_8C3A_030
HL_42097.1
HL_6ELZ_0451/1/2840:2848No text annotation
Not in a motif group
HL_6ELZ_0461/1/2897:2904No text annotation
Not in a motif group		homologous
HL_5TBW_062
HL_88526.2
HL_6ELZ_0471/1/2918:2928No text annotation
Not in a motif group
HL_6ELZ_0491/1/3025:3030No text annotation
Not in a motif group		geometric
HL_3OXE_002
HL_42097.1
HL_6ELZ_0501/1/3068:3073Ribsomal LSU H95
Not in a motif group		homologous
HL_5TBW_066
HL_46680.1
HL_6ELZ_0511/1/3110:3124No text annotation
Not in a motif group		homologous
HL_8C3A_068
HL_56677.7
HL_6ELZ_0521/1/3194:3197No text annotation
Not in a motif group		homologous
HL_5TBW_068
HL_98426.1
HL_6ELZ_0531/1/3240:3247No text annotation
Not in a motif group		homologous
HL_5TBW_069
HL_14449.2
HL_6ELZ_0541/1/3303:3311No text annotation
Not in a motif group		homologous
HL_8C3A_071
HL_27930.1
HL_6ELZ_0551/1/3350:3353No text annotation
Not in a motif group		geometric
HL_7RQB_009
HL_89098.1
HL_6ELZ_0561/2/69:89No text annotation
Not in a motif group
HL_6ELZ_0571/2/108:114No text annotation
Not in a motif group		homologous
HL_5TBW_075
HL_87939.1
HL_6ELZ_0581/2/124:129No text annotation
Not in a motif group		homologous
HL_5TBW_076
HL_96851.2
HL_6ELZ_0591/6/11:17No text annotation
Not in a motif group
HL_6ELZ_0601/6/38:42No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_6ELZ_009No text annotation
HL_6ELZ_018No text annotation
HL_6ELZ_019GNRA
HL_6ELZ_020No text annotation
HL_6ELZ_021GNRA
HL_6ELZ_023No text annotation
HL_6ELZ_026No text annotation
HL_6ELZ_027No text annotation
HL_6ELZ_028No text annotation
HL_6ELZ_030No text annotation
HL_6ELZ_031No text annotation
HL_6ELZ_032No text annotation
HL_6ELZ_033No text annotation
HL_6ELZ_034No text annotation
HL_6ELZ_035No text annotation
HL_6ELZ_036No text annotation
HL_6ELZ_037No text annotation
HL_6ELZ_038No text annotation
HL_6ELZ_039No text annotation
HL_6ELZ_040No text annotation
HL_6ELZ_041No text annotation
HL_6ELZ_042No text annotation
HL_6ELZ_043No text annotation
HL_6ELZ_044No text annotation
HL_6ELZ_048No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ELZ_0011/1/7:8,
1/2/150:152		No text annotation
Not in a motif group		homologous
IL_8C3A_002
IL_61258.12
IL_6ELZ_0021/1/13:15,
1/2/144:145		No text annotation
Not in a motif group		homologous
IL_8C3A_003
IL_83039.13
IL_6ELZ_0031/1/27:28,
1/1/56:58		No text annotation
Not in a motif group		homologous
IL_8C3A_004
IL_76488.2
IL_6ELZ_0041/1/31:38,
1/1/45:53		tSH-tHW-tHH-tHS
Not in a motif group		geometric
IL_5TBW_005
IL_35728.2
IL_6ELZ_0051/1/82:89,
1/1/97:103		No text annotation
Not in a motif group		homologous
IL_8C3A_006
IL_88613.1
IL_6ELZ_0061/1/123:124,
1/1/144:149		No text annotation
Not in a motif group		geometric
IL_5TBW_007
IL_19724.2
IL_6ELZ_0071/1/125:127,
1/1/141:143		No text annotation
Not in a motif group		homologous
IL_8C3A_008
IL_95997.1
IL_6ELZ_0081/1/164:166,
1/1/256:257		Single bulged A
Not in a motif group		geometric
IL_6D3P_004
IL_37497.2
IL_6ELZ_0091/1/169:170,
1/1/248:253		No text annotation
Not in a motif group
IL_6ELZ_0101/1/177:178,
1/1/238:241		No text annotation
Not in a motif group
IL_6ELZ_0111/1/189:191,
1/1/204:205		No text annotation
Not in a motif group		homologous
IL_8C3A_013
IL_83039.13
IL_6ELZ_0121/1/337:339,
1/2/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_37497.2
IL_6ELZ_0131/1/376:379,
1/1/390:403		No text annotation
Not in a motif group		homologous
IL_8C3A_015
IL_60992.6
IL_6ELZ_0141/1/404:410,
1/2/13:19		Triple sheared with non-canonical cWW
Not in a motif group		geometric
IL_5TBW_015
IL_66414.6
IL_6ELZ_0151/1/429:431,
1/1/628:630		No text annotation
Not in a motif group		homologous
IL_5TBW_016
IL_51629.2
IL_6ELZ_0171/1/512:513,
1/1/577:579		Single bulged A
Not in a motif group		homologous
IL_5TBW_018
IL_37497.2
IL_6ELZ_0181/1/517:525,
1/1/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_6ELZ_0191/1/531:538,
1/1/553:561		No text annotation
Not in a motif group
IL_6ELZ_0201/1/668:670,
1/1/792:794		No text annotation
Not in a motif group		homologous
IL_8C3A_023
IL_95997.1
IL_6ELZ_0211/1/680:684,
1/1/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_6ELZ_0221/1/725:728,
1/1/741:745		No text annotation
Not in a motif group		homologous
IL_8C3A_025
IL_07235.1
IL_6ELZ_0231/1/752:753,
1/1/779:781		Single bulged A
Not in a motif group		homologous
IL_5TBW_024
IL_37497.2
IL_6ELZ_0241/1/753:757,
1/1/774:779		No text annotation
Not in a motif group
IL_6ELZ_0251/1/803:805,
1/1/938:940		No text annotation
Not in a motif group		homologous
IL_8C3A_029
IL_95997.1
IL_6ELZ_0261/1/805:809,
1/1/931:938		No text annotation
Not in a motif group
IL_6ELZ_0301/1/969:970,
1/1/1111:1113		No text annotation
Not in a motif group		homologous
IL_8C3A_038
IL_76488.2
IL_6ELZ_0311/1/975:982,
1/1/1101:1106		No text annotation
Not in a motif group
IL_6ELZ_0321/1/983:985,
1/1/1099:1100		No text annotation
Not in a motif group		homologous
IL_8C3A_040
IL_00225.2
IL_6ELZ_0331/1/986:987,
1/1/1062:1098		Single bulged G
Not in a motif group		geometric
IL_3NDB_004
IL_00225.2
IL_6ELZ_0341/1/1120:1122,
1/1/1136:1138		No text annotation
Not in a motif group		homologous
IL_8C3A_049
IL_95997.1
IL_6ELZ_0351/1/1167:1171,
1/1/1328:1332		No text annotation
Not in a motif group		homologous
IL_8C3A_051
IL_89002.2
IL_6ELZ_0361/1/1173:1180,
1/1/1325:1326		SSU/LSU pseudoknot
Not in a motif group		geometric
IL_5TBW_049
IL_15861.7
IL_6ELZ_0371/1/1180:1182,
1/1/1324:1325		Single bulged U
Not in a motif group		homologous
IL_5TBW_050
IL_83039.13
IL_6ELZ_0381/1/1186:1194,
1/1/1314:1320		No text annotation
Not in a motif group
IL_6ELZ_0391/1/1194:1206,
1/1/1298:1314		No text annotation
Not in a motif group
IL_6ELZ_0401/1/1207:1209,
1/1/1296:1297		Single bulged U
Not in a motif group		homologous
IL_5TBW_053
IL_83039.13
IL_6ELZ_0411/1/1218:1226,
1/1/1283:1287		Kink-turn
Not in a motif group		homologous
IL_5TBW_054
IL_90538.4
IL_6ELZ_0441/1/1376:1378,
1/1/1428:1431		No text annotation
Not in a motif group		homologous
IL_8C3A_061
IL_52767.2
IL_6ELZ_0451/1/1385:1387,
1/1/1420:1421		No text annotation
Not in a motif group		homologous
IL_8C3A_062
IL_37497.2
IL_6ELZ_0461/1/1388:1395,
1/1/1415:1419		No text annotation
Not in a motif group		homologous
IL_8C3A_063
IL_70923.2
IL_6ELZ_0471/1/1398:1400,
1/1/1411:1412		Single bulged A
Not in a motif group		homologous
IL_5TBW_060
IL_37497.2
IL_6ELZ_0481/1/1444:1450,
1/1/2354:2359		No text annotation
Not in a motif group		homologous
IL_8C3A_065
IL_76042.2
IL_6ELZ_0661/1/2391:2395,
1/1/2985:2988		No text annotation
Not in a motif group
IL_6ELZ_0711/1/2835:2839,
1/1/2849:2853		No text annotation
Not in a motif group		homologous
IL_8C3A_114
NA
IL_6ELZ_0721/1/2876:2877,
1/1/2949:2951		Single stack bend
Not in a motif group		geometric
IL_7A0S_054
IL_76488.2
IL_6ELZ_0731/1/2878:2882,
1/1/2940:2948		No text annotation
Not in a motif group
IL_6ELZ_0741/1/2889:2891,
1/1/2912:2914		No text annotation
Not in a motif group		geometric
IL_5TBW_110
IL_51629.2
IL_6ELZ_0751/1/2891:2892,
1/1/2909:2912		No text annotation
Not in a motif group		homologous
IL_8C3A_119
IL_95601.3
IL_6ELZ_0771/1/3004:3007,
1/1/3139:3144		Double sheared
Not in a motif group		homologous
IL_5TBW_114
IL_09705.9
IL_6ELZ_0781/1/3012:3014,
1/1/3040:3042		No text annotation
Not in a motif group		homologous
IL_8C3A_124
IL_95997.1
IL_6ELZ_0791/1/3018:3025,
1/1/3030:3036		No text annotation
Not in a motif group		homologous
IL_8C3A_125
IL_04346.7
IL_6ELZ_0801/1/3047:3051,
1/1/3091:3094		No text annotation
Not in a motif group		homologous
IL_8C3A_126
IL_37712.2
IL_6ELZ_0811/1/3054:3059,
1/1/3084:3088		No text annotation
Not in a motif group		homologous
IL_8C3A_127
IL_17136.1
IL_6ELZ_0821/1/3063:3064,
1/1/3077:3080		No text annotation
Not in a motif group		homologous
IL_8C3A_128
IL_71530.2
IL_6ELZ_0831/1/3103:3107,
1/1/3127:3131		No text annotation
Not in a motif group		homologous
IL_8C3A_129
IL_89002.2
IL_6ELZ_0841/1/3164:3166,
1/1/3284:3286		No text annotation
Not in a motif group		homologous
IL_8C3A_130
IL_95997.1
IL_6ELZ_0861/1/3177:3179,
1/1/3210:3211		Single bulged A
Not in a motif group		homologous
IL_5TBW_123
IL_37497.2
IL_6ELZ_0871/1/3179:3188,
1/1/3204:3210		No text annotation
Not in a motif group		geometric
IL_5TBW_124
IL_15174.1
IL_6ELZ_0881/1/3193:3194,
1/1/3197:3199		Single bulged U
Not in a motif group		geometric
IL_5TBW_125
IL_83039.13
IL_6ELZ_0891/1/3225:3229,
1/1/3258:3260		No text annotation
Not in a motif group		homologous
IL_8C3A_133
IL_19389.6
IL_6ELZ_0901/1/3233:3235,
1/1/3252:3254		No text annotation
Not in a motif group		geometric
IL_3DIL_006
IL_95997.1
IL_6ELZ_0911/1/3235:3238,
1/1/3249:3252		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5TBW_128
IL_30621.2
IL_6ELZ_0921/1/3300:3303,
1/1/3311:3314		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_5TBW_129
IL_30621.2
IL_6ELZ_0931/1/3318:3320,
1/1/3387:3388		Single bulged U
Not in a motif group		geometric
IL_5TBW_130
IL_83039.13
IL_6ELZ_0941/1/3324:3326,
1/1/3380:3383		Isolated non-canonical cWW with bulges
Not in a motif group		geometric
IL_5TBW_145
IL_82068.2
IL_6ELZ_0951/1/3328:3330,
1/1/3373:3378		No text annotation
Not in a motif group		homologous
IL_8C3A_138
IL_90933.2
IL_6ELZ_0961/1/3332:3337,
1/1/3367:3371		No text annotation
Not in a motif group		homologous
IL_8C3A_139
IL_83162.5
IL_6ELZ_0971/1/3339:3342,
1/1/3363:3365		Isolated non-canonical cWW with bulges
Not in a motif group		geometric
IL_1U6B_001
IL_82068.2
IL_6ELZ_0981/1/3342:3345,
1/1/3360:3363		No text annotation
Not in a motif group		homologous
IL_8C3A_141
IL_09705.9
IL_6ELZ_0991/1/3349:3350,
1/1/3353:3356		No text annotation
Not in a motif group		homologous
IL_8C3A_142
IL_59677.2
IL_6ELZ_1001/2/44:64,
1/2/96:100		No text annotation
Not in a motif group		geometric
IL_5TBW_144
IL_44998.1
IL_6ELZ_1011/2/64:66,
1/2/93:96		Isolated non-canonical cWW with bulges
Not in a motif group		homologous
IL_5TBW_145
IL_82068.2
IL_6ELZ_1021/2/68:69,
1/2/89:91		Single bulged U
Not in a motif group		geometric
IL_5TBW_146
IL_83039.13
IL_6ELZ_1031/6/26:27,
1/6/51:54		Multiple bulged bases
Not in a motif group		geometric
IL_4V88_392
IL_44546.1
IL_6ELZ_1041/6/30:34,
1/6/45:48		No text annotation
Not in a motif group
IL_6ELZ_1051/6/36:38,
1/6/42:43		Single stack bend
Not in a motif group		geometric
IL_7KGA_003
IL_76488.2

Problematic loops

#loop idProblemSequence
IL_6ELZ_016No text annotation
IL_6ELZ_027Quadruple sheared
IL_6ELZ_028No text annotation
IL_6ELZ_029Single bulged U
IL_6ELZ_042No text annotation
IL_6ELZ_043No text annotation
IL_6ELZ_049No text annotation
IL_6ELZ_050C-loop
IL_6ELZ_051No text annotation
IL_6ELZ_052No text annotation
IL_6ELZ_053Single bulged G, near cWW
IL_6ELZ_054No text annotation
IL_6ELZ_055No text annotation
IL_6ELZ_056No text annotation
IL_6ELZ_057No text annotation
IL_6ELZ_058Single stack bend
IL_6ELZ_059No text annotation
IL_6ELZ_060No text annotation
IL_6ELZ_061Kink-turn
IL_6ELZ_062No text annotation
IL_6ELZ_063No text annotation
IL_6ELZ_064No text annotation
IL_6ELZ_065Intercalated tWH
IL_6ELZ_067No text annotation
IL_6ELZ_068No text annotation
IL_6ELZ_069No text annotation
IL_6ELZ_070No text annotation
IL_6ELZ_076No text annotation
IL_6ELZ_085No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ELZ_0011/1/113:123,
1/1/149:158,
1/1/263:267		No text annotation
Not in a motif group
J3_6ELZ_0021/1/369:376,
1/1/403:404,
1/2/19:20		No text annotation
Not in a motif group		homologous
J3_5TBW_002
NA
J3_6ELZ_0031/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA
J3_6ELZ_0081/1/2886:2889,
1/1/2914:2916,
1/1/2930:2936		No text annotation
Not in a motif group		homologous
J3_8C3A_011
NA
J3_6ELZ_0091/1/3298:3300,
1/1/3314:3318,
1/1/3388:3390		No text annotation
Not in a motif group		homologous
J3_5TBW_015
NA

Problematic loops

#loop idProblemSequence
J3_6ELZ_004No text annotation
J3_6ELZ_005No text annotation
J3_6ELZ_006No text annotation
J3_6ELZ_007No text annotation

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