Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6VYU_0011/A/13:22No text annotation
Not in a motif group
HL_6VYU_0021/A/31:39No text annotation
Not in a motif group
homologous
HL_5UD5_002
HL_71170.1
HL_6VYU_0031/A/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5HR6_003
HL_22280.4
HL_6VYU_0041/B/13:22No text annotation
Not in a motif group
HL_6VYU_0051/B/29:41No text annotation
Not in a motif group
HL_6VYU_0061/B/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5HR6_003
HL_22280.4
HL_6VYU_0071/D/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_6VYU_0081/D/80:89No text annotation
Not in a motif group
HL_6VYU_0091/D/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_35490.2
HL_6VYU_0101/D/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_35490.2
HL_6VYU_0111/D/207:212No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_70546.1
HL_6VYU_0121/D/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_6VYU_0131/D/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_35490.2
HL_6VYU_0141/D/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_6VYU_0151/D/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_6VYU_0161/D/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_35490.2
HL_6VYU_0171/D/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_6VYU_0181/D/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_6VYU_0201/D/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.3
HL_6VYU_0211/D/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_6VYU_0221/D/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_6VYU_0231/D/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_6VYU_0241/D/840:846No text annotation
Not in a motif group
HL_6VYU_0251/D/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_35490.2
HL_6VYU_0261/D/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_35490.2
HL_6VYU_0281/D/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_35490.2
HL_6VYU_0291/D/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_35490.2
HL_6VYU_0301/D/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_6VYU_0311/D/1134:1140No text annotation
Not in a motif group
homologous
HL_5J7L_025
HL_03562.2
HL_6VYU_0321/D/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_35490.2
HL_6VYU_0331/D/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_35490.2
HL_6VYU_0341/D/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_41998.1
HL_6VYU_0351/D/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_6VYU_0361/D/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_6VYU_0381/a/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_6VYU_0391/a/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_03186.1
HL_6VYU_0401/a/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_70546.1
HL_6VYU_0411/a/137:142UNCG
Not in a motif group
geometric
HL_5J7L_030
HL_03562.2
HL_6VYU_0421/a/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_6VYU_0431/a/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_6VYU_0441/a/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_56241.1
HL_6VYU_0451/a/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_6VYU_0461/a/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_41998.1
HL_6VYU_0471/a/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_70546.1
HL_6VYU_0481/a/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.9
HL_6VYU_0491/a/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_6VYU_0501/a/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_6VYU_0511/a/462:467GNRA
Not in a motif group
homologous
HL_5J7L_147
HL_35490.2
HL_6VYU_0521/a/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_35490.2
HL_6VYU_0531/a/544:549No text annotation
Not in a motif group
homologous
HL_7RQB_017
NA
HL_6VYU_0541/a/566:575T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_41998.1
HL_6VYU_0551/a/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.3
HL_6VYU_0561/a/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_35490.2
HL_6VYU_0571/a/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_6VYU_0581/a/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_6VYU_0601/a/779:785No text annotation
Not in a motif group
homologous
HL_5J7L_156
HL_74322.1
HL_6VYU_0611/a/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_53619.1
HL_6VYU_0621/a/885:891No text annotation
Not in a motif group
geometric
HL_6DTD_001
HL_53619.1
HL_6VYU_0641/a/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_6VYU_0651/a/1065:1073No text annotation
Not in a motif group
HL_6VYU_0661/a/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_6VYU_0671/a/1172:1177No text annotation
Not in a motif group
HL_6VYU_0681/a/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_6VYU_0691/a/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_41998.1
HL_6VYU_0701/a/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_6VYU_0711/a/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_6VYU_0721/a/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_6VYU_0731/a/1451:1459No text annotation
Not in a motif group
geometric
HL_7A0S_017
HL_53837.2
HL_6VYU_0741/a/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_6VYU_0751/a/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_6VYU_0761/a/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.5
HL_6VYU_0781/a/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_35490.2
HL_6VYU_0791/a/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_6VYU_0801/a/1728:1731No text annotation
Not in a motif group
homologous
HL_5J7L_176
HL_98426.1
HL_6VYU_0811/a/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.5
HL_6VYU_0821/a/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_6VYU_0831/a/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_35490.2
HL_6VYU_0841/a/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_35490.2
HL_6VYU_0861/a/1949:1957No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_6VYU_0881/a/2143:2148No text annotation
Not in a motif group
homologous
HL_5J7L_184
NA
HL_6VYU_0891/a/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_6VYU_0911/a/2264:2276No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.6
HL_6VYU_0921/a/2303:2313No text annotation
Not in a motif group
homologous
HL_5J7L_188
HL_11805.3
HL_6VYU_0931/a/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.4
HL_6VYU_0941/a/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_6VYU_0951/a/2374:2379GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_35490.2
HL_6VYU_0961/a/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_40210.2
HL_6VYU_0971/a/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_6VYU_0981/a/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_91104.1
HL_6VYU_1001/a/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_35490.2
HL_6VYU_1011/a/2658:2663GNRA
Not in a motif group
geometric
HL_4V9F_066
HL_35490.2
HL_6VYU_1021/a/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_6VYU_1031/a/2745:2759No text annotation
Not in a motif group
HL_6VYU_1041/a/2794:2802No text annotation
Not in a motif group
geometric
HL_5TBW_015
HL_03345.1
HL_6VYU_1051/a/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_64690.1
HL_6VYU_1061/a/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_35490.2
HL_6VYU_1071/d/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.2
HL_6VYU_1081/d/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.5

Problematic loops

#loop idProblemSequence
HL_6VYU_019No text annotation
HL_6VYU_027No text annotation
HL_6VYU_037No text annotation
HL_6VYU_059No text annotation
HL_6VYU_063No text annotation
HL_6VYU_077No text annotation
HL_6VYU_085No text annotation
HL_6VYU_087No text annotation
HL_6VYU_090No text annotation
HL_6VYU_099No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6VYU_0011/D/30:32,
1/D/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.3
IL_6VYU_0021/D/44:45,
1/D/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.6
IL_6VYU_0031/D/47:52,
1/D/359:361
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_14177.1
IL_6VYU_0041/D/54:56,
1/D/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_80097.1
IL_6VYU_0051/D/63:66,
1/D/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_6VYU_0061/D/67:69,
1/D/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_6VYU_0071/D/70:73,
1/D/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_6VYU_0081/D/75:77,
1/D/92:95
Single bulged G, near cWW
Not in a motif group
homologous
IL_5J7L_008
IL_43275.1
IL_6VYU_0091/D/128:131,
1/D/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_43275.1
IL_6VYU_0101/D/132:136,
1/D/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_6VYU_0111/D/144:146,
1/D/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_70707.2
IL_6VYU_0121/D/147:153,
1/D/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_6VYU_0131/D/203:207,
1/D/212:214
No text annotation
Not in a motif group
homologous
IL_5J7L_013
IL_33912.1
IL_6VYU_0141/D/242:247,
1/D/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_6VYU_0151/D/249:252,
1/D/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_6VYU_0161/D/292:293,
1/D/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_6VYU_0171/D/367:369,
1/D/392:393
Single bulged U
Not in a motif group
geometric
IL_4LFB_014
IL_83039.16
IL_6VYU_0181/D/371:375,
1/D/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_6VYU_0191/D/375:376,
1/D/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.3
IL_6VYU_0201/D/409:416,
1/D/427:433
No text annotation
Not in a motif group
IL_6VYU_0211/D/440:442,
1/D/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_6VYU_0221/D/446:450,
1/D/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_6VYU_0231/D/450:455,
1/D/477:483
No text annotation
Not in a motif group
homologous
IL_5J7L_023
IL_70801.1
IL_6VYU_0241/D/504:511,
1/D/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_6VYU_0261/D/569:575,
1/D/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_6VYU_0271/D/580:584,
1/D/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_6VYU_0281/D/594:596,
1/D/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.3
IL_6VYU_0291/D/597:598,
1/D/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.8
IL_6VYU_0301/D/605:612,
1/D/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_6VYU_0311/D/654:655,
1/D/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_031
IL_50694.2
IL_6VYU_0321/D/658:659,
1/D/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.4
IL_6VYU_0331/D/662:666,
1/D/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_6VYU_0341/D/673:678,
1/D/712:717
No text annotation
Not in a motif group
geometric
IL_5J7L_034
IL_04668.2
IL_6VYU_0351/D/684:688,
1/D/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_6VYU_0361/D/774:778,
1/D/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_6VYU_0371/D/779:783,
1/D/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_6VYU_0381/D/887:894,
1/D/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_6VYU_0391/D/922:923,
1/D/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.6
IL_6VYU_0401/D/925:927,
1/D/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.3
IL_6VYU_0411/D/933:935,
1/D/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_6VYU_0421/D/953:954,
1/D/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_6VYU_0431/D/993:997,
1/D/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_5J7L_043
IL_47078.1
IL_6VYU_0441/D/998:1000,
1/D/1040:1043
No text annotation
Not in a motif group
geometric
IL_4P3T_002
IL_46796.1
IL_6VYU_0451/D/1003:1006,
1/D/1023:1037
No text annotation
Not in a motif group
IL_6VYU_0461/D/1048:1050,
1/D/1208:1209
Single bulged U
Not in a motif group
geometric
IL_5J7L_046
IL_83039.16
IL_6VYU_0471/D/1050:1052,
1/D/1206:1208
No text annotation
Not in a motif group
homologous
IL_4LFB_043
NA
IL_6VYU_0481/D/1052:1056,
1/D/1204:1206
Isolated cWS basepair
Not in a motif group
geometric
IL_4LFB_044
IL_76319.2
IL_6VYU_0491/D/1057:1058,
1/D/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_80097.1
IL_6VYU_0501/D/1060:1061,
1/D/1195:1197
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.16
IL_6VYU_0511/D/1061:1063,
1/D/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_86319.2
IL_6VYU_0521/D/1124:1128,
1/D/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_6VYU_0531/D/1129:1132,
1/D/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_6VYU_0541/D/1158:1161,
1/D/1175:1181
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_6VYU_0551/D/1247:1253,
1/D/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_6VYU_0561/D/1255:1258,
1/D/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_6VYU_0571/D/1259:1263,
1/D/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_6VYU_0581/D/1303:1308,
1/D/1329:1334
No text annotation
Not in a motif group
homologous
IL_5J7L_057
IL_19954.2
IL_6VYU_0591/D/1399:1401,
1/D/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_6VYU_0621/D/1412:1414,
1/D/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_86319.2
IL_6VYU_0631/D/1416:1419,
1/D/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.10
IL_6VYU_0641/D/1430:1435,
1/D/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_6VYU_0651/D/1440:1442,
1/D/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.4
IL_6VYU_0661/D/1445:1448,
1/D/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.7
IL_6VYU_0671/a/24:30,
1/a/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_245
IL_66414.6
IL_6VYU_0681/a/36:37,
1/a/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.6
IL_6VYU_0691/a/43:44,
1/a/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.4
IL_6VYU_0701/a/81:85,
1/a/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_6VYU_0711/a/183:184,
1/a/212:214
Single stack bend
Not in a motif group
homologous
IL_4WF9_007
IL_76488.4
IL_6VYU_0721/a/188:194,
1/a/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_250
IL_04346.7
IL_6VYU_0731/a/239:245,
1/a/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_6VYU_0741/a/269:271,
1/a/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_6VYU_0751/a/274:281,
1/a/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_6VYU_0761/a/293:295,
1/a/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_6VYU_0771/a/481:484,
1/a/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.6
IL_6VYU_0781/a/536:539,
1/a/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.10
IL_6VYU_0791/a/564:566,
1/a/575:577
No text annotation
Not in a motif group
geometric
IL_5J7L_257
IL_86319.2
IL_6VYU_0801/a/606:610,
1/a/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_6VYU_0811/a/672:674,
1/a/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_86319.2
IL_6VYU_0821/a/674:678,
1/a/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.6
IL_6VYU_0831/a/697:698,
1/a/763:765
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_37497.6
IL_6VYU_0841/a/702:703,
1/a/728:730
Single bulged G
Not in a motif group
geometric
IL_5J7L_262
IL_00225.3
IL_6VYU_0851/a/703:707,
1/a/724:728
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_6VYU_0861/a/738:740,
1/a/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.3
IL_6VYU_0871/a/741:742,
1/a/754:756
Single stack bend
Not in a motif group
geometric
IL_4LFB_041
IL_76488.4
IL_6VYU_0881/a/742:744,
1/a/753:754
Single stack bend
Not in a motif group
geometric
IL_4V83_236
IL_76488.4
IL_6VYU_0891/a/775:777,
1/a/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_6VYU_0901/a/844:847,
1/a/933:934
Other IL
Not in a motif group
homologous
IL_5J7L_267
IL_92001.1
IL_6VYU_0911/a/847:848,
1/a/930:933
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_6VYU_0921/a/849:850,
1/a/927:929
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.4
IL_6VYU_0931/a/856:862,
1/a/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_6VYU_0941/a/862:863,
1/a/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.3
IL_6VYU_0951/a/864:868,
1/a/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_6VYU_0961/a/870:872,
1/a/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_86319.2
IL_6VYU_0971/a/875:879,
1/a/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_6VYU_0981/a/880:883,
1/a/893:897
No text annotation
Not in a motif group
IL_6VYU_0991/a/994:996,
1/a/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_6VYU_1001/a/998:1002,
1/a/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_6VYU_1011/a/1004:1011,
1/a/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_6VYU_1021/a/1011:1013,
1/a/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.16
IL_6VYU_1031/a/1018:1024,
1/a/1140:1144
No text annotation
Not in a motif group
geometric
IL_5J7L_280
IL_57188.3
IL_6VYU_1041/a/1024:1030,
1/a/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_6VYU_1051/a/1031:1034,
1/a/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_43275.1
IL_6VYU_1061/a/1038:1041,
1/a/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.4
IL_6VYU_1071/a/1043:1051,
1/a/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_6VYU_1081/a/1059:1062,
1/a/1076:1079
No text annotation
Not in a motif group
homologous
IL_5J7L_285
IL_23544.2
IL_6VYU_1091/a/1087:1090,
1/a/1101:1102
No text annotation
Not in a motif group
homologous
IL_6PRV_002
NA
IL_6VYU_1101/a/1196:1198,
1/a/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.4
IL_6VYU_1111/a/1202:1206,
1/a/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_6VYU_1121/a/1208:1215,
1/a/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_6VYU_1131/a/1262:1269,
1/a/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_6VYU_1141/a/1310:1313,
1/a/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_6VYU_1151/a/1319:1323,
1/a/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_6VYU_1161/a/1351:1355,
1/a/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_6VYU_1171/a/1357:1361,
1/a/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_6VYU_1181/a/1410:1411,
1/a/1590:1592
Single stack bend
Not in a motif group
geometric
IL_4LFB_041
IL_76488.4
IL_6VYU_1191/a/1411:1413,
1/a/1589:1590
Single stack bend
Not in a motif group
geometric
IL_4V83_236
IL_76488.4
IL_6VYU_1201/a/1415:1416,
1/a/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_6VYU_1211/a/1417:1421,
1/a/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_6VYU_1221/a/1432:1435,
1/a/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_6VYU_1231/a/1437:1440,
1/a/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_6VYU_1241/a/1450:1451,
1/a/1459:1461
Single bulged U
Not in a motif group
homologous
IL_5J7L_298
IL_83039.16
IL_6VYU_1251/a/1468:1471,
1/a/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_6VYU_1261/a/1474:1478,
1/a/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_6VYU_1271/a/1480:1482,
1/a/1507:1511
No text annotation
Not in a motif group
IL_6VYU_1281/a/1489:1491,
1/a/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.6
IL_6VYU_1291/a/1526:1529,
1/a/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_6VYU_1301/a/1651:1656,
1/a/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_6VYU_1311/a/1663:1665,
1/a/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_6VYU_1321/a/1666:1669,
1/a/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_6VYU_1331/a/1669:1674,
1/a/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_5J7L_307
IL_76273.1
IL_6VYU_1341/a/1686:1691,
1/a/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_65969.2
IL_6VYU_1351/a/1712:1718,
1/a/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_6VYU_1361/a/1720:1724,
1/a/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_6VYU_1371/a/1727:1728,
1/a/1731:1733
Single bulged C
Not in a motif group
geometric
IL_5J7L_311
IL_61258.12
IL_6VYU_1381/a/1770:1771,
1/a/1980:1982
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_37497.6
IL_6VYU_1391/a/1798:1804,
1/a/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_6VYU_1401/a/1837:1840,
1/a/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.3
IL_6VYU_1411/a/1841:1842,
1/a/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_6VYU_1421/a/1846:1849,
1/a/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.8
IL_6VYU_1431/a/1864:1867,
1/a/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.2
IL_6VYU_1441/a/1933:1934,
1/a/1964:1967
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_076
IL_59677.2
IL_6VYU_1461/a/2050:2052,
1/a/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.3
IL_6VYU_1471/a/2054:2056,
1/a/2612:2615
No text annotation
Not in a motif group
IL_6VYU_1481/a/2064:2066,
1/a/2444:2446
No text annotation
Not in a motif group
homologous
IL_5J7L_322
NA
IL_6VYU_1501/a/2070:2071,
1/a/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_5J7L_324
IL_42622.4
IL_6VYU_1511/a/2081:2083,
1/a/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_6VYU_1521/a/2085:2087,
1/a/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_86319.2
IL_6VYU_1531/a/2103:2105,
1/a/2184:2186
No text annotation
Not in a motif group
geometric
IL_7A0S_107
IL_70707.2
IL_6VYU_1541/a/2108:2110,
1/a/2179:2181
No text annotation
Not in a motif group
geometric
IL_4KZD_003
IL_86319.2
IL_6VYU_1551/a/2110:2121,
1/a/2177:2179
No text annotation
Not in a motif group
IL_6VYU_1561/a/2122:2127,
1/a/2161:2176
No text annotation
Not in a motif group
IL_6VYU_1571/a/2129:2136,
1/a/2155:2159
Kink-turn
Not in a motif group
homologous
IL_5J7L_330
IL_70923.2
IL_6VYU_1581/a/2202:2204,
1/a/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.16
IL_6VYU_1591/a/2350:2353,
1/a/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.10
IL_6VYU_1601/a/2401:2403,
1/a/2414:2415
No text annotation
Not in a motif group
IL_6VYU_1611/a/2453:2455,
1/a/2496:2500
No text annotation
Not in a motif group
homologous
IL_5J7L_335
NA
IL_6VYU_1631/a/2459:2461,
1/a/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric