7V2P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7V2P_001 | 1/A/13:23 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_7V2P_002 | 1/A/79:85 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_7V2P_003 | 1/A/153:158 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_7V2P_004 | 1/A/187:192 | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_7V2P_005 | 1/A/208:212 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_7V2P_006 | 1/A/255:263 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_7V2P_007 | 1/A/292:297 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_7V2P_008 | 1/A/316:329 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_7V2P_009 | 1/A/338:343 | UNCG | homologous HL_6CZR_080 NA | |
| HL_7V2P_010 | 1/A/375:380 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_7V2P_011 | 1/A/415:420 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_7V2P_012 | 1/A/453:459 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_7V2P_013 | 1/A/506:511 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_7V2P_014 | 1/A/601:607 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_7V2P_015 | 1/A/673:682 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_7V2P_016 | 1/A/710:715 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_7V2P_018 | 1/A/822:826 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_7V2P_019 | 1/A/840:845 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_7V2P_020 | 1/A/875:880 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_7V2P_021 | 1/A/941:950 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_7V2P_022 | 1/A/991:996 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_7V2P_023 | 1/A/1009:1014 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7V2P_024 | 1/A/1059:1064 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_7V2P_025 | 1/A/1072:1079 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_7V2P_026 | 1/A/1116:1124 | No text annotation | ||
| HL_7V2P_027 | 1/A/1148:1153 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_7V2P_028 | 1/A/1247:1252 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_7V2P_029 | 1/A/1296:1305 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_7V2P_030 | 1/A/1338:1349 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_7V2P_031 | 1/A/1493:1498 | Mini UNCG | geometric HL_4ZLD_001 HL_56334.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7V2P_017 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7V2P_001 | 1/A/31:33, 1/A/536:537 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_7V2P_002 | 1/A/45:46, 1/A/392:394 | Single bulged A | homologous IL_6CZR_114 NA | |
| IL_7V2P_003 | 1/A/48:53, 1/A/355:357 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_7V2P_004 | 1/A/55:57, 1/A/352:353 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_7V2P_005 | 1/A/64:67, 1/A/97:98 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_7V2P_006 | 1/A/68:70, 1/A/94:96 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_7V2P_007 | 1/A/123:126, 1/A/227:228 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_7V2P_008 | 1/A/127:131, 1/A/223:226 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_7V2P_009 | 1/A/143:148, 1/A/163:169 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_7V2P_010 | 1/A/181:183, 1/A/196:198 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_7V2P_011 | 1/A/238:243, 1/A/273:280 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_7V2P_012 | 1/A/245:248, 1/A/270:271 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_7V2P_013 | 1/A/288:289, 1/A/300:304 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_7V2P_014 | 1/A/363:365, 1/A/388:389 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_7V2P_015 | 1/A/367:371, 1/A/385:386 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_7V2P_016 | 1/A/371:372, 1/A/383:385 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_7V2P_017 | 1/A/405:412, 1/A/423:429 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_7V2P_018 | 1/A/441:445, 1/A/468:473 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_88269.4 | |
| IL_7V2P_019 | 1/A/445:450, 1/A/462:468 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_7V2P_020 | 1/A/488:495, 1/A/524:525 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_7V2P_021 | 1/A/499:505, 1/A/512:520 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7V2P_022 | 1/A/553:559, 1/A/858:859 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_7V2P_023 | 1/A/564:568, 1/A/741:745 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_7V2P_024 | 1/A/578:580, 1/A/628:629 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_7V2P_025 | 1/A/581:582, 1/A/624:627 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_7V2P_026 | 1/A/589:596, 1/A/612:617 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_7V2P_027 | 1/A/638:639, 1/A/735:738 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_7V2P_028 | 1/A/641:642, 1/A/731:733 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_7V2P_029 | 1/A/646:650, 1/A/724:727 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_7V2P_053 | 1/A/657:661, 1/A/697:701 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_7V2P_031 | 1/A/667:672, 1/A/683:691 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_7V2P_032 | 1/A/758:762, 1/A/788:789 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_7V2P_033 | 1/A/763:767, 1/A/783:787 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_7V2P_034 | 1/A/865:872, 1/A/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_7V2P_054 | 1/A/903:905, 1/A/1373:1374 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.4 | |
| IL_7V2P_036 | 1/A/911:913, 1/A/1363:1367 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_7V2P_037 | 1/A/931:932, 1/A/1208:1210 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_7V2P_038 | 1/A/971:975, 1/A/1027:1028 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_7V2P_039 | 1/A/979:981, 1/A/1022:1023 | No text annotation | ||
| IL_7V2P_040 | 1/A/1031:1033, 1/A/1190:1191 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_7V2P_041 | 1/A/1035:1039, 1/A/1186:1188 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_7V2P_042 | 1/A/1040:1041, 1/A/1181:1185 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_7V2P_043 | 1/A/1043:1044, 1/A/1177:1179 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_7V2P_044 | 1/A/1044:1046, 1/A/1175:1177 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_7V2P_045 | 1/A/1107:1110, 1/A/1128:1132 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_7V2P_046 | 1/A/1112:1115, 1/A/1125:1126 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_7V2P_047 | 1/A/1141:1144, 1/A/1157:1163 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_7V2P_048 | 1/A/1229:1235, 1/A/1266:1272 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_7V2P_049 | 1/A/1237:1240, 1/A/1259:1264 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_7V2P_050 | 1/A/1241:1242, 1/A/1256:1258 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_7V2P_051 | 1/A/1242:1244, 1/A/1255:1256 | Minor groove platform | homologous IL_4LFB_054 IL_51454.2 | |
| IL_7V2P_052 | 1/A/1285:1290, 1/A/1311:1316 | No text annotation | homologous IL_4LFB_055 IL_85536.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7V2P_030 | No text annotation | ||
| IL_7V2P_035 | Isolated cWS basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7V2P_001 | 1/A/47:48, 1/A/357:363, 1/A/389:391 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_7V2P_013 | 1/A/47:53, 1/A/355:363, 1/A/389:391 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_7V2P_002 | 1/A/570:572, 1/A/635:638, 1/A/738:739 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_7V2P_014 | 1/A/570:572, 1/A/635:639, 1/A/735:739 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_7V2P_003 | 1/A/656:657, 1/A/701:709, 1/A/716:718 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_7V2P_004 | 1/A/810:813, 1/A/835:839, 1/A/846:852 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_7V2P_015 | 1/A/914:917, 1/A/1326:1332, 1/A/1355:1362 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_7V2P_005 | 1/A/921:924, 1/A/1217:1219, 1/A/1319:1322 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_7V2P_006 | 1/A/933:940, 1/A/951:962, 1/A/1203:1207 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_7V2P_007 | 1/A/968:971, 1/A/1028:1030, 1/A/1192:1197 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_7V2P_016 | 1/A/968:975, 1/A/1027:1030, 1/A/1192:1197 | No text annotation | homologous J3_6CZR_063 NA | |
| J3_7V2P_008 | 1/A/982:986, 1/A/1001:1006, 1/A/1017:1021 | No text annotation | ||
| J3_7V2P_009 | 1/A/1046:1051, 1/A/1090:1096, 1/A/1169:1175 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_7V2P_010 | 1/A/1056:1057, 1/A/1066:1070, 1/A/1081:1085 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
| J3_7V2P_011 | 1/A/1099:1101, 1/A/1138:1141, 1/A/1163:1166 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_7V2P_017 | 1/A/1099:1101, 1/A/1138:1144, 1/A/1157:1166 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_7V2P_012 | 1/A/1219:1223, 1/A/1278:1285, 1/A/1316:1319 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_7V2P_001 | 1/A/109:116, 1/A/235:236, 1/A/282:285, 1/A/307:308 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_7V2P_002 | 1/A/137:139, 1/A/173:178, 1/A/201:205, 1/A/215:217 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_7V2P_003 | 1/A/559:561, 1/A/748:753, 1/A/794:805, 1/A/857:858 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J5_7V2P_001 | 1/A/37:40, 1/A/399:402, 1/A/432:437, 1/A/477:484, 1/A/529:532 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_7V2P_002 | 1/A/59:62, 1/A/100:107, 1/A/310:312, 1/A/333:335, 1/A/346:350 | No text annotation | homologous J5_4LFB_002 J5_59910.6 |
Problematic loops
No problematic loops
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