6DZK Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6DZK_001 | 1/A/16:26 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6DZK_002 | 1/A/82:87 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6DZK_003 | 1/A/155:160 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_6DZK_004 | 1/A/191:196 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_6DZK_005 | 1/A/213:218 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6DZK_006 | 1/A/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_6DZK_007 | 1/A/296:301 | GNRA Not in a motif group | homologous HL_6CZR_078 HL_42097.1 | |
| HL_6DZK_008 | 1/A/320:333 | No text annotation Not in a motif group | ||
| HL_6DZK_009 | 1/A/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
| HL_6DZK_010 | 1/A/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_6DZK_011 | 1/A/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_6DZK_012 | 1/A/454:459 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6DZK_013 | 1/A/502:507 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_6DZK_014 | 1/A/597:603 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_6DZK_015 | 1/A/669:678 | No text annotation Not in a motif group | homologous HL_6CZR_086 HL_12326.1 | |
| HL_6DZK_016 | 1/A/706:711 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_6DZK_017 | 1/A/766:776 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_6DZK_018 | 1/A/820:828 | No text annotation Not in a motif group | ||
| HL_6DZK_019 | 1/A/844:849 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_6DZK_020 | 1/A/879:884 | GNRA Not in a motif group | homologous HL_6CZR_091 HL_42097.1 | |
| HL_6DZK_021 | 1/A/945:954 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6DZK_022 | 1/A/995:1000 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6DZK_023 | 1/A/1009:1015 | No text annotation Not in a motif group | ||
| HL_6DZK_024 | 1/A/1056:1061 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_6DZK_025 | 1/A/1069:1076 | No text annotation Not in a motif group | homologous HL_6CZR_096 HL_71554.2 | |
| HL_6DZK_026 | 1/A/1114:1121 | No text annotation Not in a motif group | ||
| HL_6DZK_027 | 1/A/1146:1152 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_6DZK_028 | 1/A/1246:1251 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_6DZK_029 | 1/A/1296:1305 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6DZK_030 | 1/A/1338:1349 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_6DZK_031 | 1/A/1433:1436 | No text annotation Not in a motif group | ||
| HL_6DZK_032 | 1/A/1499:1504 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6DZK_001 | 1/A/34:36, 1/A/532:533 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_6DZK_002 | 1/A/48:49, 1/A/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_6DZK_003 | 1/A/51:56, 1/A/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_6DZK_004 | 1/A/58:60, 1/A/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_6DZK_005 | 1/A/67:70, 1/A/99:100 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_6DZK_006 | 1/A/71:73, 1/A/95:98 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_6DZK_007 | 1/A/74:77, 1/A/93:94 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_6DZK_008 | 1/A/77:79, 1/A/90:93 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_6DZK_009 | 1/A/125:128, 1/A/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_6DZK_010 | 1/A/129:133, 1/A/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6DZK_011 | 1/A/144:150, 1/A/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_6DZK_012 | 1/A/187:188, 1/A/199:201 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.13 | |
| IL_6DZK_013 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_6DZK_014 | 1/A/249:252, 1/A/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_6DZK_015 | 1/A/292:293, 1/A/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_6DZK_016 | 1/A/367:369, 1/A/392:393 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.13 | |
| IL_6DZK_017 | 1/A/371:375, 1/A/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_6DZK_018 | 1/A/375:376, 1/A/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6DZK_019 | 1/A/409:416, 1/A/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_6DZK_020 | 1/A/440:442, 1/A/472:477 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_6DZK_021 | 1/A/446:450, 1/A/463:468 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_6DZK_022 | 1/A/450:453, 1/A/460:463 | No text annotation Not in a motif group | ||
| IL_6DZK_023 | 1/A/484:491, 1/A/520:521 | SSU/LSU pseudoknot Not in a motif group | homologous IL_6CZR_132 IL_15861.7 | |
| IL_6DZK_024 | 1/A/495:501, 1/A/508:516 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6DZK_025 | 1/A/560:564, 1/A/737:741 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_6DZK_026 | 1/A/574:576, 1/A/624:625 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_6DZK_027 | 1/A/577:578, 1/A/620:623 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_6DZK_028 | 1/A/585:591, 1/A/609:613 | No text annotation Not in a motif group | ||
| IL_6DZK_029 | 1/A/634:635, 1/A/731:734 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_6DZK_030 | 1/A/637:638, 1/A/727:729 | Major groove platform Not in a motif group | homologous IL_6CZR_140 IL_27635.1 | |
| IL_6DZK_031 | 1/A/642:646, 1/A/720:723 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_6DZK_032 | 1/A/653:658, 1/A/692:697 | No text annotation Not in a motif group | geometric IL_5J7L_034 IL_04668.1 | |
| IL_6DZK_033 | 1/A/664:668, 1/A/679:686 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_6DZK_034 | 1/A/754:758, 1/A/784:785 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_6DZK_035 | 1/A/759:763, 1/A/779:783 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_6DZK_036 | 1/A/869:876, 1/A/887:892 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_6DZK_037 | 1/A/904:905, 1/A/1376:1378 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_6DZK_038 | 1/A/907:909, 1/A/1373:1374 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_6DZK_039 | 1/A/935:936, 1/A/1207:1209 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_6DZK_040 | 1/A/975:979, 1/A/1024:1025 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
| IL_6DZK_041 | 1/A/1028:1030, 1/A/1189:1190 | No text annotation Not in a motif group | homologous IL_6CZR_152 NA | |
| IL_6DZK_042 | 1/A/1032:1036, 1/A/1185:1187 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_6DZK_043 | 1/A/1037:1039, 1/A/1179:1184 | No text annotation Not in a motif group | geometric IL_3OXE_002 IL_18471.2 | |
| IL_6DZK_044 | 1/A/1040:1041, 1/A/1176:1178 | Single bulged A Not in a motif group | homologous IL_5J7L_049 IL_37497.2 | |
| IL_6DZK_045 | 1/A/1041:1043, 1/A/1174:1176 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_6DZK_046 | 1/A/1104:1108, 1/A/1125:1130 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_6DZK_047 | 1/A/1108:1112, 1/A/1123:1125 | No text annotation Not in a motif group | ||
| IL_6DZK_048 | 1/A/1139:1142, 1/A/1156:1162 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6DZK_049 | 1/A/1227:1234, 1/A/1265:1273 | No text annotation Not in a motif group | ||
| IL_6DZK_050 | 1/A/1236:1239, 1/A/1258:1263 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_6DZK_051 | 1/A/1240:1245, 1/A/1252:1257 | No text annotation Not in a motif group | ||
| IL_6DZK_052 | 1/A/1285:1290, 1/A/1311:1316 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_6DZK_053 | 1/A/1382:1384, 1/A/1485:1488 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_6DZK_054 | 1/A/1384:1387, 1/A/1481:1485 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6DZK_055 | 1/A/1388:1390, 1/A/1478:1480 | No text annotation Not in a motif group | geometric IL_5MWI_004 IL_95997.1 | |
| IL_6DZK_056 | 1/A/1390:1392, 1/A/1475:1478 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_009 IL_82068.2 | |
| IL_6DZK_057 | 1/A/1395:1397, 1/A/1470:1472 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_6DZK_058 | 1/A/1399:1402, 1/A/1465:1468 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_6DZK_059 | 1/A/1407:1410, 1/A/1458:1460 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_6DZK_060 | 1/A/1410:1411, 1/A/1456:1458 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6DZK_061 | 1/A/1413:1418, 1/A/1450:1454 | Triple sheared related Not in a motif group | geometric IL_5J7L_063 IL_64879.2 | |
| IL_6DZK_062 | 1/A/1418:1420, 1/A/1448:1450 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_6DZK_063 | 1/A/1423:1426, 1/A/1443:1445 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_6DZK_064 | 1/A/1428:1431, 1/A/1439:1441 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
| IL_6DZK_065 | 1/A/1432:1433, 1/A/1436:1438 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6DZK_001 | 1/A/50:51, 1/A/361:367, 1/A/393:395 | No text annotation Not in a motif group | ||
| J3_6DZK_002 | 1/A/566:568, 1/A/631:634, 1/A/734:735 | No text annotation Not in a motif group | ||
| J3_6DZK_003 | 1/A/652:653, 1/A/697:705, 1/A/712:714 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
| J3_6DZK_004 | 1/A/806:809, 1/A/839:843, 1/A/850:856 | No text annotation Not in a motif group | ||
| J3_6DZK_005 | 1/A/925:929, 1/A/1215:1218, 1/A/1319:1322 | No text annotation Not in a motif group | ||
| J3_6DZK_006 | 1/A/937:944, 1/A/955:966, 1/A/1202:1206 | No text annotation Not in a motif group | ||
| J3_6DZK_007 | 1/A/972:975, 1/A/1025:1027, 1/A/1191:1196 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_6DZK_008 | 1/A/986:990, 1/A/1005:1008, 1/A/1016:1017 | No text annotation Not in a motif group | ||
| J3_6DZK_009 | 1/A/1043:1048, 1/A/1087:1093, 1/A/1168:1174 | No text annotation Not in a motif group | ||
| J3_6DZK_010 | 1/A/1052:1055, 1/A/1062:1067, 1/A/1078:1083 | No text annotation Not in a motif group | ||
| J3_6DZK_011 | 1/A/1096:1099, 1/A/1135:1139, 1/A/1162:1165 | No text annotation Not in a motif group | ||
| J3_6DZK_012 | 1/A/1218:1222, 1/A/1278:1285, 1/A/1316:1319 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
No problematic loops
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