7ODE Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ODE_001 | 1/I/59:68 | No text annotation Not in a motif group | geometric HL_5J7L_134 HL_18177.1 | |
| HL_7ODE_002 | 1/I/87:95 | No text annotation Not in a motif group | geometric HL_5J7L_135 HL_84193.1 | |
| HL_7ODE_003 | 1/I/123:128 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_7ODE_004 | 1/I/137:142 | UNCG Not in a motif group | geometric HL_4AY2_001 HL_03562.2 | |
| HL_7ODE_005 | 1/I/158:168 | No text annotation Not in a motif group | geometric HL_5J7L_138 HL_81820.1 | |
| HL_7ODE_006 | 1/I/225:230 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_7ODE_008 | 1/I/305:312 | T-loop with 1 bulged base Not in a motif group | geometric HL_5J7L_142 HL_89380.2 | |
| HL_7ODE_009 | 1/I/319:323 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_7ODE_010 | 1/I/327:335 | No text annotation Not in a motif group | geometric HL_5J7L_144 HL_08002.9 | |
| HL_7ODE_013 | 1/I/462:467 | GNRA Not in a motif group | geometric HL_4WF9_015 HL_42097.2 | |
| HL_7ODE_014 | 1/I/487:493 | No text annotation Not in a motif group | geometric HL_5J7L_148 HL_42097.2 | |
| HL_7ODE_016 | 1/I/566:575 | No text annotation Not in a motif group | geometric HL_5J7L_012 HL_84085.2 | |
| HL_7ODE_017 | 1/I/611:617 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_90617.2 | |
| HL_7ODE_018 | 1/I/712:719 | No text annotation Not in a motif group | geometric HL_5J7L_154 HL_84085.2 | |
| HL_7ODE_019 | 1/I/744:753 | No text annotation Not in a motif group | geometric HL_5TBW_020 HL_39334.6 | |
| HL_7ODE_020 | 1/I/779:785 | No text annotation Not in a motif group | geometric HL_5J7L_156 HL_74322.1 | |
| HL_7ODE_023 | 1/I/978:985 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_7ODE_025 | 1/I/1222:1227 | Other HL Not in a motif group | geometric HL_5J7L_164 HL_87030.2 | |
| HL_7ODE_026 | 1/I/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_165 HL_89380.2 | |
| HL_7ODE_027 | 1/I/1324:1330 | No text annotation Not in a motif group | geometric HL_5J7L_166 HL_46680.1 | |
| HL_7ODE_028 | 1/I/1363:1368 | GNRA Not in a motif group | geometric HL_3NVI_002 HL_42097.2 | |
| HL_7ODE_029 | 1/I/1389:1398 | No text annotation Not in a motif group | geometric HL_5J7L_168 HL_69023.2 | |
| HL_7ODE_030 | 1/I/1451:1459 | No text annotation Not in a motif group | geometric HL_7A0S_017 HL_53837.1 | |
| HL_7ODE_031 | 1/I/1492:1498 | No text annotation Not in a motif group | geometric HL_5J7L_170 HL_46680.1 | |
| HL_7ODE_033 | 1/I/1565:1568 | No text annotation Not in a motif group | geometric HL_7RQB_039 HL_38927.2 | |
| HL_7ODE_034 | 1/I/1612:1619 | No text annotation Not in a motif group | geometric HL_7RQB_040 HL_64430.2 | |
| HL_7ODE_035 | 1/I/1630:1636 | GNRA with one bulged base Not in a motif group | geometric HL_5J7L_174 HL_42097.2 | |
| HL_7ODE_036 | 1/I/1691:1696 | UNCG Not in a motif group | geometric HL_5D5L_003 HL_03562.2 | |
| HL_7ODE_038 | 1/I/1752:1756 | No text annotation Not in a motif group | geometric HL_4WF9_042 HL_76539.2 | |
| HL_7ODE_039 | 1/I/1777:1787 | No text annotation Not in a motif group | geometric HL_4WF9_043 HL_43613.5 | |
| HL_7ODE_040 | 1/I/1806:1811 | GNRA Not in a motif group | geometric HL_4FRG_002 HL_42097.2 | |
| HL_7ODE_044 | 1/I/2658:2663 | GNRA Not in a motif group | geometric HL_3P22_001 HL_42097.2 | |
| HL_7ODE_045 | 1/I/2701:2706 | Ribsomal LSU H95 Not in a motif group | geometric HL_5J7L_198 HL_46680.1 | |
| HL_7ODE_046 | 1/I/2795:2801 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_7ODE_047 | 1/I/2819:2827 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_27930.1 | |
| HL_7ODE_048 | 1/I/2856:2861 | Other HL Not in a motif group | geometric HL_5J7L_202 HL_42097.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ODE_007 | No text annotation | ||
| HL_7ODE_011 | No text annotation | ||
| HL_7ODE_012 | No text annotation | ||
| HL_7ODE_015 | No text annotation | ||
| HL_7ODE_021 | No text annotation | ||
| HL_7ODE_022 | No text annotation | ||
| HL_7ODE_024 | No text annotation | ||
| HL_7ODE_032 | No text annotation | ||
| HL_7ODE_037 | No text annotation | ||
| HL_7ODE_041 | No text annotation | ||
| HL_7ODE_042 | No text annotation | ||
| HL_7ODE_043 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ODE_001 | 1/I/24:30, 1/I/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_4WF9_001 IL_66414.6 | |
| IL_7ODE_002 | 1/I/36:37, 1/I/442:444 | Single bulged A Not in a motif group | geometric IL_7RQB_002 IL_37497.3 | |
| IL_7ODE_003 | 1/I/43:44, 1/I/434:436 | Minor groove platform Not in a motif group | geometric IL_7RQB_003 IL_42622.2 | |
| IL_7ODE_004 | 1/I/81:85, 1/I/97:105 | No text annotation Not in a motif group | geometric IL_5J7L_248 IL_93699.1 | |
| IL_7ODE_005 | 1/I/183:184, 1/I/212:214 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_7ODE_006 | 1/I/188:194, 1/I/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_7ODE_007 | 1/I/239:245, 1/I/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_007 IL_76042.2 | |
| IL_7ODE_008 | 1/I/269:271, 1/I/366:370 | No text annotation Not in a motif group | geometric IL_5J7L_252 IL_47972.1 | |
| IL_7ODE_009 | 1/I/274:281, 1/I/359:363 | No text annotation Not in a motif group | geometric IL_5J7L_253 IL_77870.1 | |
| IL_7ODE_010 | 1/I/293:295, 1/I/343:347 | No text annotation Not in a motif group | geometric IL_5J7L_254 IL_69440.1 | |
| IL_7ODE_011 | 1/I/481:484, 1/I/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_7ODE_012 | 1/I/536:539, 1/I/554:557 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_7ODE_013 | 1/I/564:566, 1/I/575:577 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_7ODE_014 | 1/I/601:604, 1/I/624:656 | No text annotation Not in a motif group | ||
| IL_7ODE_015 | 1/I/606:610, 1/I/618:622 | AAA cross-strand stack Not in a motif group | geometric IL_5J7L_258 IL_17136.1 | |
| IL_7ODE_016 | 1/I/672:678, 1/I/799:808 | No text annotation Not in a motif group | ||
| IL_7ODE_017 | 1/I/697:698, 1/I/763:765 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.3 | |
| IL_7ODE_018 | 1/I/702:703, 1/I/728:730 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.3 | |
| IL_7ODE_019 | 1/I/703:707, 1/I/724:728 | Triple sheared Not in a motif group | geometric IL_4V9F_027 IL_56467.8 | |
| IL_7ODE_020 | 1/I/738:740, 1/I/757:758 | Major groove platform Not in a motif group | geometric IL_4LFB_024 IL_27635.2 | |
| IL_7ODE_021 | 1/I/775:777, 1/I/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_7ODE_022 | 1/I/844:847, 1/I/933:934 | Other IL Not in a motif group | geometric IL_5J7L_267 IL_92001.1 | |
| IL_7ODE_023 | 1/I/847:848, 1/I/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_7ODE_024 | 1/I/848:853, 1/I/924:930 | No text annotation Not in a motif group | ||
| IL_7ODE_025 | 1/I/994:996, 1/I/1159:1160 | Single bulged C Not in a motif group | geometric IL_5J7L_276 IL_61258.12 | |
| IL_7ODE_026 | 1/I/998:1002, 1/I/1153:1157 | UAA/GAN Not in a motif group | geometric IL_4WF9_036 IL_89002.2 | |
| IL_7ODE_027 | 1/I/1004:1011, 1/I/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_7ODE_028 | 1/I/1011:1013, 1/I/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.14 | |
| IL_7ODE_029 | 1/I/1018:1024, 1/I/1140:1144 | No text annotation Not in a motif group | geometric IL_5J7L_280 IL_57188.3 | |
| IL_7ODE_030 | 1/I/1196:1198, 1/I/1247:1250 | Isolated cWS basepair Not in a motif group | geometric IL_5J7L_286 IL_52767.2 | |
| IL_7ODE_031 | 1/I/1202:1206, 1/I/1240:1243 | No text annotation Not in a motif group | geometric IL_5J7L_287 IL_91920.1 | |
| IL_7ODE_032 | 1/I/1208:1215, 1/I/1234:1238 | Kink-turn Not in a motif group | geometric IL_5J7L_288 IL_70923.2 | |
| IL_7ODE_033 | 1/I/1262:1269, 1/I/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_289 IL_04346.7 | |
| IL_7ODE_034 | 1/I/1310:1313, 1/I/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_050 IL_50694.2 | |
| IL_7ODE_035 | 1/I/1319:1323, 1/I/1331:1333 | C-loop Not in a motif group | geometric IL_5J7L_291 IL_63596.6 | |
| IL_7ODE_036 | 1/I/1351:1355, 1/I/1376:1380 | UAA/GAN Not in a motif group | geometric IL_5J7L_292 IL_89002.2 | |
| IL_7ODE_037 | 1/I/1357:1361, 1/I/1370:1374 | tSH-tHW-tHS Not in a motif group | geometric IL_5J7L_293 IL_17136.1 | |
| IL_7ODE_038 | 1/I/1415:1416, 1/I/1582:1587 | No text annotation Not in a motif group | ||
| IL_7ODE_039 | 1/I/1417:1421, 1/I/1577:1581 | UAA/GAN Not in a motif group | geometric IL_5J7L_295 IL_89002.2 | |
| IL_7ODE_040 | 1/I/1432:1435, 1/I/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_296 IL_55178.1 | |
| IL_7ODE_041 | 1/I/1437:1440, 1/I/1551:1555 | tSH-tHW Not in a motif group | geometric IL_5J7L_297 IL_04059.1 | |
| IL_7ODE_042 | 1/I/1450:1451, 1/I/1459:1461 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.14 | |
| IL_7ODE_043 | 1/I/1468:1471, 1/I/1520:1524 | No text annotation Not in a motif group | geometric IL_5J7L_299 IL_68574.2 | |
| IL_7ODE_044 | 1/I/1474:1478, 1/I/1513:1517 | tSH-tHW-tHS Not in a motif group | geometric IL_5J7L_300 IL_38862.1 | |
| IL_7ODE_045 | 1/I/1481:1482, 1/I/1507:1510 | No text annotation Not in a motif group | ||
| IL_7ODE_046 | 1/I/1489:1491, 1/I/1499:1500 | Single bulged A Not in a motif group | geometric IL_5J7L_302 IL_37497.3 | |
| IL_7ODE_047 | 1/I/1526:1529, 1/I/1542:1546 | UAA/GAN variation Not in a motif group | geometric IL_5J7L_303 IL_07235.1 | |
| IL_7ODE_048 | 1/I/1651:1656, 1/I/2004:2006 | No text annotation Not in a motif group | geometric IL_7RQB_064 IL_12566.2 | |
| IL_7ODE_049 | 1/I/1663:1665, 1/I/1995:1997 | Isolated tWW turn Not in a motif group | geometric IL_5J7L_305 IL_54997.7 | |
| IL_7ODE_050 | 1/I/1666:1669, 1/I/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_7ODE_051 | 1/I/1669:1674, 1/I/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_7ODE_052 | 1/I/1686:1691, 1/I/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.2 | |
| IL_7ODE_053 | 1/I/1712:1718, 1/I/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_309 IL_88269.3 | |
| IL_7ODE_054 | 1/I/1720:1724, 1/I/1736:1740 | Triple sheared Not in a motif group | geometric IL_5J7L_310 IL_56467.8 | |
| IL_7ODE_055 | 1/I/1770:1771, 1/I/1980:1982 | Single bulged A Not in a motif group | geometric IL_4WF9_068 IL_37497.3 | |
| IL_7ODE_056 | 1/I/1798:1804, 1/I/1813:1821 | Kink-turn related Not in a motif group | geometric IL_5J7L_313 IL_17069.3 | |
| IL_7ODE_057 | 1/I/2050:2052, 1/I/2617:2618 | Major groove platform Not in a motif group | geometric IL_7RQB_078 IL_27635.2 | |
| IL_7ODE_058 | 1/I/2202:2204, 1/I/2220:2221 | Single bulged U Not in a motif group | geometric IL_5J7L_331 IL_83039.14 | |
| IL_7ODE_059 | 1/I/2636:2640, 1/I/2774:2782 | tSH-tHS-tHW Not in a motif group | geometric IL_4WF9_099 IL_04638.1 | |
| IL_7ODE_060 | 1/I/2652:2658, 1/I/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_7ODE_061 | 1/I/2680:2684, 1/I/2725:2727 | C-loop Not in a motif group | geometric IL_5J7L_347 IL_63596.6 | |
| IL_7ODE_062 | 1/I/2687:2691, 1/I/2718:2722 | No text annotation Not in a motif group | geometric IL_5J7L_348 IL_08296.3 | |
| IL_7ODE_063 | 1/I/2695:2696, 1/I/2711:2714 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_349 IL_71530.2 | |
| IL_7ODE_064 | 1/I/2737:2742, 1/I/2762:2767 | No text annotation Not in a motif group | ||
| IL_7ODE_065 | 1/I/2806:2811, 1/I/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_7ODE_066 | 1/I/2838:2839, 1/I/2878:2880 | Major groove intercalation Not in a motif group | geometric IL_4WF9_112 IL_37497.3 | |
| IL_7ODE_067 | 1/I/2843:2846, 1/I/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | geometric IL_5J7L_353 IL_58764.3 | |
| IL_7ODE_068 | 1/I/2847:2852, 1/I/2865:2869 | No text annotation Not in a motif group | geometric IL_7RQB_110 IL_83162.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ODE_001 | 1/I/30:31, 1/I/474:481, 1/I/509:510 | No text annotation Not in a motif group | ||
| J3_7ODE_002 | 1/I/56:57, 1/I/70:76, 1/I/110:114 | No text annotation Not in a motif group | ||
| J3_7ODE_003 | 1/I/683:689, 1/I/773:775, 1/I/791:794 | No text annotation Not in a motif group | ||
| J3_7ODE_004 | 1/I/698:700, 1/I/732:736, 1/I/760:763 | No text annotation Not in a motif group | ||
| J3_7ODE_005 | 1/I/1298:1303, 1/I/1625:1627, 1/I/1639:1642 | No text annotation Not in a motif group | ||
| J3_7ODE_006 | 1/I/1306:1309, 1/I/1605:1611, 1/I/1620:1622 | No text annotation Not in a motif group | ||
| J3_7ODE_007 | 1/I/1344:1349, 1/I/1382:1385, 1/I/1402:1403 | No text annotation Not in a motif group | ||
| J3_7ODE_008 | 1/I/2789:2791, 1/I/2805:2806, 1/I/2892:2894 | No text annotation Not in a motif group | ||
| J3_7ODE_009 | 1/I/2812:2815, 1/I/2831:2836, 1/I/2882:2888 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: