6GSM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GSM_001 | 1/1/13:22 | No text annotation Not in a motif group | homologous HL_3KFU_004 NA | |
| HL_6GSM_002 | 1/1/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4WT8_216 HL_53597.2 | |
| HL_6GSM_003 | 1/1/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4QEI_003 HL_71309.1 | |
| HL_6GSM_004 | 1/2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6GSM_005 | 1/2/70:81 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_6GSM_006 | 1/2/152:160 | No text annotation Not in a motif group | ||
| HL_6GSM_007 | 1/2/189:194 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6GSM_008 | 1/2/229:234 | No text annotation Not in a motif group | homologous HL_4V88_190 HL_91058.1 | |
| HL_6GSM_009 | 1/2/242:249 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6GSM_010 | 1/2/274:280 | No text annotation Not in a motif group | ||
| HL_6GSM_011 | 1/2/329:337 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6GSM_012 | 1/2/366:373 | No text annotation Not in a motif group | geometric HL_7RQB_057 HL_09136.1 | |
| HL_6GSM_013 | 1/2/392:403 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6GSM_014 | 1/2/410:421 | No text annotation Not in a motif group | ||
| HL_6GSM_015 | 1/2/449:455 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6GSM_016 | 1/2/490:495 | No text annotation Not in a motif group | ||
| HL_6GSM_017 | 1/2/519:531 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_6GSM_018 | 1/2/567:574 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_6GSM_019 | 1/2/659:669 | No text annotation Not in a motif group | ||
| HL_6GSM_020 | 1/2/703:735 | No text annotation Not in a motif group | ||
| HL_6GSM_021 | 1/2/763:773 | No text annotation Not in a motif group | ||
| HL_6GSM_022 | 1/2/777:782 | No text annotation Not in a motif group | ||
| HL_6GSM_023 | 1/2/828:842 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_6GSM_024 | 1/2/898:909 | No text annotation Not in a motif group | ||
| HL_6GSM_025 | 1/2/936:941 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6GSM_026 | 1/2/996:1006 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6GSM_027 | 1/2/1053:1064 | No text annotation Not in a motif group | ||
| HL_6GSM_028 | 1/2/1083:1088 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6GSM_029 | 1/2/1120:1125 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_6GSM_030 | 1/2/1187:1196 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_6GSM_031 | 1/2/1233:1249 | No text annotation Not in a motif group | ||
| HL_6GSM_032 | 1/2/1295:1300 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_6GSM_033 | 1/2/1308:1315 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6GSM_034 | 1/2/1358:1363 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_6GSM_035 | 1/2/1392:1402 | No text annotation Not in a motif group | ||
| HL_6GSM_036 | 1/2/1499:1504 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6GSM_037 | 1/2/1547:1560 | No text annotation Not in a motif group | ||
| HL_6GSM_038 | 1/2/1592:1600 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6GSM_040 | 1/2/1776:1781 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6GSM_039 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GSM_001 | 1/2/24:27, 1/2/598:600 | No text annotation Not in a motif group | geometric IL_5Y7M_007 IL_95997.1 | |
| IL_6GSM_002 | 1/2/35:37, 1/2/470:472 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6GSM_003 | 1/2/37:41, 1/2/465:470 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_6GSM_004 | 1/2/42:48, 1/2/430:432 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_6GSM_005 | 1/2/50:52, 1/2/427:428 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6GSM_006 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6GSM_007 | 1/2/64:70, 1/2/81:86 | No text annotation Not in a motif group | ||
| IL_6GSM_008 | 1/2/109:112, 1/2/301:304 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6GSM_009 | 1/2/112:113, 1/2/299:301 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6GSM_010 | 1/2/113:117, 1/2/298:299 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_6GSM_011 | 1/2/117:123, 1/2/293:298 | No text annotation Not in a motif group | ||
| IL_6GSM_012 | 1/2/142:148, 1/2/164:171 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6GSM_013 | 1/2/149:151, 1/2/161:163 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_6GSM_014 | 1/2/185:188, 1/2/195:198 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_6GSM_015 | 1/2/203:205, 1/2/258:262 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_6GSM_016 | 1/2/205:206, 1/2/256:258 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_6GSM_017 | 1/2/207:210, 1/2/253:255 | No text annotation Not in a motif group | geometric IL_6ZDU_001 IL_23164.1 | |
| IL_6GSM_018 | 1/2/264:266, 1/2/287:288 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6GSM_019 | 1/2/269:273, 1/2/281:284 | No text annotation Not in a motif group | ||
| IL_6GSM_020 | 1/2/310:315, 1/2/347:354 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6GSM_021 | 1/2/317:322, 1/2/344:345 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6GSM_022 | 1/2/362:364, 1/2/375:380 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6GSM_023 | 1/2/388:390, 1/2/405:407 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6GSM_024 | 1/2/438:440, 1/2/462:463 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_6GSM_025 | 1/2/442:446, 1/2/459:460 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6GSM_026 | 1/2/446:447, 1/2/457:459 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6GSM_027 | 1/2/479:483, 1/2/502:507 | No text annotation Not in a motif group | ||
| IL_6GSM_028 | 1/2/486:489, 1/2/496:499 | No text annotation Not in a motif group | ||
| IL_6GSM_029 | 1/2/516:519, 1/2/531:534 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_6GSM_030 | 1/2/547:556, 1/2/586:589 | No text annotation Not in a motif group | ||
| IL_6GSM_031 | 1/2/556:558, 1/2/585:586 | Single bulged U Not in a motif group | geometric IL_4WF9_080 IL_83039.13 | |
| IL_6GSM_032 | 1/2/561:567, 1/2/574:582 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6GSM_033 | 1/2/615:621, 1/2/1103:1104 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6GSM_034 | 1/2/623:625, 1/2/972:974 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6GSM_035 | 1/2/626:630, 1/2/967:971 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6GSM_036 | 1/2/650:652, 1/2/678:683 | No text annotation Not in a motif group | ||
| IL_6GSM_037 | 1/2/656:658, 1/2/670:674 | No text annotation Not in a motif group | ||
| IL_6GSM_038 | 1/2/746:747, 1/2/801:804 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_6GSM_039 | 1/2/758:760, 1/2/789:792 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_6GSM_040 | 1/2/818:821, 1/2/849:851 | No text annotation Not in a motif group | homologous IL_4V88_426 IL_95997.1 | |
| IL_6GSM_041 | 1/2/866:869, 1/2/956:960 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_6GSM_042 | 1/2/870:873, 1/2/952:955 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.2 | |
| IL_6GSM_043 | 1/2/873:877, 1/2/949:952 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_6GSM_044 | 1/2/884:887, 1/2/922:926 | No text annotation Not in a motif group | ||
| IL_6GSM_045 | 1/2/887:889, 1/2/921:922 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_6GSM_046 | 1/2/892:898, 1/2/909:918 | No text annotation Not in a motif group | ||
| IL_6GSM_047 | 1/2/984:993, 1/2/1009:1015 | No text annotation Not in a motif group | ||
| IL_6GSM_048 | 1/2/1033:1035, 1/2/1094:1100 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6GSM_049 | 1/2/1040:1044, 1/2/1072:1076 | No text annotation Not in a motif group | ||
| IL_6GSM_050 | 1/2/1050:1052, 1/2/1065:1066 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_6GSM_051 | 1/2/1110:1117, 1/2/1128:1133 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6GSM_052 | 1/2/1145:1147, 1/2/1627:1630 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_6GSM_053 | 1/2/1148:1150, 1/2/1625:1626 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_6GSM_054 | 1/2/1156:1160, 1/2/1614:1619 | No text annotation Not in a motif group | ||
| IL_6GSM_055 | 1/2/1172:1174, 1/2/1462:1464 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6GSM_056 | 1/2/1177:1178, 1/2/1457:1459 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6GSM_057 | 1/2/1212:1214, 1/2/1446:1448 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_6GSM_058 | 1/2/1232:1233, 1/2/1249:1251 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6GSM_059 | 1/2/1267:1269, 1/2/1438:1439 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_6GSM_060 | 1/2/1271:1275, 1/2/1434:1436 | Isolated cWS basepair Not in a motif group | homologous IL_4V88_450 IL_76319.2 | |
| IL_6GSM_061 | 1/2/1275:1277, 1/2/1428:1434 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_6GSM_062 | 1/2/1279:1280, 1/2/1424:1426 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_6GSM_063 | 1/2/1305:1307, 1/2/1316:1317 | Minor groove platform Not in a motif group | geometric IL_4WF9_032 IL_42622.2 | |
| IL_6GSM_064 | 1/2/1333:1335, 1/2/1413:1415 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_6GSM_065 | 1/2/1337:1341, 1/2/1381:1384 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_6GSM_066 | 1/2/1344:1350, 1/2/1372:1378 | No text annotation Not in a motif group | ||
| IL_6GSM_067 | 1/2/1350:1353, 1/2/1368:1372 | No text annotation Not in a motif group | geometric IL_1CSL_001 IL_67743.1 | |
| IL_6GSM_068 | 1/2/1387:1390, 1/2/1404:1410 | No text annotation Not in a motif group | geometric IL_4LFB_050 IL_42032.1 | |
| IL_6GSM_069 | 1/2/1478:1485, 1/2/1517:1525 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_6GSM_070 | 1/2/1486:1492, 1/2/1511:1516 | No text annotation Not in a motif group | geometric IL_5J7L_055 IL_75461.4 | |
| IL_6GSM_071 | 1/2/1493:1498, 1/2/1505:1510 | No text annotation Not in a motif group | ||
| IL_6GSM_072 | 1/2/1538:1543, 1/2/1564:1569 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_6GSM_073 | 1/2/1634:1636, 1/2/1762:1765 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_6GSM_074 | 1/2/1636:1639, 1/2/1758:1762 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6GSM_075 | 1/2/1640:1642, 1/2/1755:1757 | CC cWW Not in a motif group | geometric IL_4KNQ_002 IL_95997.1 | |
| IL_6GSM_076 | 1/2/1642:1645, 1/2/1751:1755 | No text annotation Not in a motif group | ||
| IL_6GSM_077 | 1/2/1648:1650, 1/2/1746:1748 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6GSM_078 | 1/2/1651:1654, 1/2/1742:1745 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_6GSM_079 | 1/2/1654:1656, 1/2/1741:1742 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_6GSM_080 | 1/2/1663:1665, 1/2/1732:1734 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6GSM_081 | 1/2/1667:1670, 1/2/1727:1730 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6GSM_082 | 1/2/1673:1676, 1/2/1721:1724 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.2 | |
| IL_6GSM_083 | 1/2/1676:1680, 1/2/1717:1721 | Triple sheared Not in a motif group | geometric IL_7RQB_075 IL_56467.8 | |
| IL_6GSM_084 | 1/2/1684:1688, 1/2/1709:1713 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GSM_001 | 1/2/41:42, 1/2/432:438, 1/2/463:465 | No text annotation Not in a motif group | ||
| J3_6GSM_002 | 1/2/632:634, 1/2/860:865, 1/2/961:965 | No text annotation Not in a motif group | homologous J3_8C3A_034 NA | |
| J3_6GSM_003 | 1/2/879:883, 1/2/927:935, 1/2/942:947 | No text annotation Not in a motif group | ||
| J3_6GSM_004 | 1/2/1036:1038, 1/2/1078:1082, 1/2/1089:1093 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6GSM_005 | 1/2/1160:1164, 1/2/1578:1585, 1/2/1607:1614 | No text annotation Not in a motif group | ||
| J3_6GSM_006 | 1/2/1167:1170, 1/2/1466:1468, 1/2/1572:1575 | No text annotation Not in a motif group | ||
| J3_6GSM_007 | 1/2/1179:1186, 1/2/1197:1208, 1/2/1452:1456 | No text annotation Not in a motif group | ||
| J3_6GSM_008 | 1/2/1214:1219, 1/2/1262:1267, 1/2/1439:1446 | No text annotation Not in a motif group | ||
| J3_6GSM_009 | 1/2/1282:1287, 1/2/1326:1331, 1/2/1417:1422 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_6GSM_010 | 1/2/1289:1293, 1/2/1302:1305, 1/2/1317:1324 | No text annotation Not in a motif group | ||
| J3_6GSM_011 | 1/2/1335:1337, 1/2/1384:1387, 1/2/1410:1413 | No text annotation Not in a motif group | homologous J3_8C3A_043 NA | |
| J3_6GSM_012 | 1/2/1468:1472, 1/2/1531:1538, 1/2/1569:1572 | No text annotation Not in a motif group | homologous J3_4V88_041 NA |
Problematic loops
No problematic loops
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