7AJU Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7AJU_001 | 1/D2/4:9 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
HL_7AJU_002 | 1/D2/23:57 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
HL_7AJU_003 | 1/D3/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
HL_7AJU_004 | 1/D3/70:81 | No text annotation Not in a motif group | homologous HL_4V88_187 HL_40069.1 | |
HL_7AJU_005 | 1/D3/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
HL_7AJU_006 | 1/D3/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
HL_7AJU_007 | 1/D3/230:235 | No text annotation Not in a motif group | homologous HL_4V88_190 HL_91058.1 | |
HL_7AJU_008 | 1/D3/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
HL_7AJU_009 | 1/D3/276:279 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
HL_7AJU_010 | 1/D3/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
HL_7AJU_011 | 1/D3/367:374 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
HL_7AJU_012 | 1/D3/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
HL_7AJU_013 | 1/D3/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
HL_7AJU_014 | 1/D3/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
HL_7AJU_015 | 1/D3/491:496 | No text annotation Not in a motif group | geometric HL_4WF9_031 HL_87030.2 | |
HL_7AJU_016 | 1/D3/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
HL_7AJU_017 | 1/D3/561:566 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
HL_7AJU_018 | 1/D3/716:722 | No text annotation Not in a motif group | ||
HL_7AJU_019 | 1/D3/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
HL_7AJU_020 | 1/D3/777:783 | No text annotation Not in a motif group | homologous HL_4V88_204 HL_97896.2 | |
HL_7AJU_022 | 1/D3/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
HL_7AJU_023 | 1/D3/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
HL_7AJU_024 | 1/D3/997:1007 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_75407.1 | |
HL_7AJU_025 | 1/D3/1055:1064 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
HL_7AJU_026 | 1/D3/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
HL_7AJU_028 | 1/D3/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
HL_7AJU_029 | 1/D3/1552:1559 | No text annotation Not in a motif group | ||
HL_7AJU_030 | 1/D3/1594:1602 | No text annotation Not in a motif group | geometric HL_4OOG_001 HL_65572.2 | |
HL_7AJU_031 | 1/D3/1629:1636 | No text annotation Not in a motif group | ||
HL_7AJU_032 | 1/D3/1698:1703 | No text annotation Not in a motif group | geometric HL_7RQB_063 HL_42097.1 | |
HL_7AJU_033 | 1/D3/1778:1783 | No text annotation Not in a motif group | geometric HL_6AAX_001 HL_94803.1 | |
HL_7AJU_034 | 1/D4/153:160 | No text annotation Not in a motif group | ||
HL_7AJU_035 | 1/D4/180:185 | No text annotation Not in a motif group |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7AJU_021 | No text annotation | ||
HL_7AJU_027 | No text annotation | ||
HL_7AJU_036 | No text annotation | ||
HL_7AJU_037 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7AJU_001 | 1/D2/17:18, 1/D2/62:64 | Single bulged G Not in a motif group | geometric IL_5TBW_037 IL_00225.2 | |
IL_7AJU_002 | 1/D2/285:289, 1/D4/64:68 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
IL_7AJU_003 | 1/D2/465:468, 1/D4/50:51 | No text annotation Not in a motif group | ||
IL_7AJU_004 | 1/D2/468:470, 1/D4/48:50 | Single stack bend Not in a motif group | geometric IL_5TBW_004 IL_76488.2 | |
IL_7AJU_005 | 1/D3/24:26, 1/D3/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
IL_7AJU_006 | 1/D3/35:37, 1/D3/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
IL_7AJU_007 | 1/D3/50:52, 1/D3/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
IL_7AJU_008 | 1/D3/58:63, 1/D3/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
IL_7AJU_009 | 1/D3/64:69, 1/D3/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
IL_7AJU_010 | 1/D3/109:112, 1/D3/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
IL_7AJU_011 | 1/D3/113:116, 1/D3/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
IL_7AJU_012 | 1/D3/117:122, 1/D3/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
IL_7AJU_013 | 1/D3/143:149, 1/D3/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
IL_7AJU_014 | 1/D3/150:152, 1/D3/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_3CZW_002 IL_51629.2 | |
IL_7AJU_015 | 1/D3/186:189, 1/D3/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
IL_7AJU_016 | 1/D3/204:206, 1/D3/259:263 | No text annotation Not in a motif group | geometric IL_5B2P_002 IL_95997.1 | |
IL_7AJU_017 | 1/D3/206:208, 1/D3/257:259 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_95997.1 | |
IL_7AJU_018 | 1/D3/265:267, 1/D3/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
IL_7AJU_019 | 1/D3/270:273, 1/D3/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
IL_7AJU_020 | 1/D3/275:276, 1/D3/279:281 | Single bulged U Not in a motif group | homologous IL_4V88_401 IL_83039.13 | |
IL_7AJU_021 | 1/D3/311:316, 1/D3/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
IL_7AJU_022 | 1/D3/318:323, 1/D3/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
IL_7AJU_023 | 1/D3/363:365, 1/D3/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
IL_7AJU_024 | 1/D3/389:391, 1/D3/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
IL_7AJU_025 | 1/D3/411:413, 1/D3/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
IL_7AJU_026 | 1/D3/439:441, 1/D3/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
IL_7AJU_027 | 1/D3/443:447, 1/D3/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
IL_7AJU_028 | 1/D3/447:448, 1/D3/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
IL_7AJU_029 | 1/D3/482:484, 1/D3/503:506 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_405 IL_51629.2 | |
IL_7AJU_030 | 1/D3/516:520, 1/D3/532:536 | Triple sheared Not in a motif group | geometric IL_5J7L_338 IL_56467.8 | |
IL_7AJU_031 | 1/D3/551:552, 1/D3/584:587 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
IL_7AJU_032 | 1/D3/552:559, 1/D3/568:584 | No text annotation Not in a motif group | ||
IL_7AJU_033 | 1/D3/624:626, 1/D3/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
IL_7AJU_034 | 1/D3/627:631, 1/D3/968:972 | UAA/GAN with extra pair Not in a motif group | geometric IL_7RQB_074 IL_90318.1 | |
IL_7AJU_035 | 1/D3/646:648, 1/D3/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
IL_7AJU_036 | 1/D3/648:650, 1/D3/685:686 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_76488.2 | |
IL_7AJU_037 | 1/D3/650:651, 1/D3/683:685 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
IL_7AJU_038 | 1/D3/652:658, 1/D3/676:682 | No text annotation Not in a motif group | ||
IL_7AJU_039 | 1/D3/703:708, 1/D3/730:735 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
IL_7AJU_040 | 1/D3/709:712, 1/D3/726:729 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_002 IL_30621.2 | |
IL_7AJU_041 | 1/D3/746:747, 1/D3/802:805 | Minor groove platform Not in a motif group | geometric IL_7RQB_073 IL_88739.1 | |
IL_7AJU_042 | 1/D3/748:750, 1/D3/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
IL_7AJU_043 | 1/D3/751:759, 1/D3/791:798 | No text annotation Not in a motif group | ||
IL_7AJU_044 | 1/D3/865:866, 1/D3/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
IL_7AJU_045 | 1/D3/867:870, 1/D3/957:961 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
IL_7AJU_046 | 1/D3/871:874, 1/D3/953:956 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.2 | |
IL_7AJU_047 | 1/D3/874:878, 1/D3/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
IL_7AJU_048 | 1/D3/885:888, 1/D3/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
IL_7AJU_049 | 1/D3/893:899, 1/D3/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
IL_7AJU_050 | 1/D3/985:990, 1/D3/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
IL_7AJU_051 | 1/D3/990:994, 1/D3/1010:1014 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
IL_7AJU_052 | 1/D3/1034:1036, 1/D3/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
IL_7AJU_053 | 1/D3/1041:1044, 1/D3/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
IL_7AJU_054 | 1/D3/1051:1053, 1/D3/1066:1067 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
IL_7AJU_055 | 1/D3/1117:1120, 1/D4/5:7 | No text annotation Not in a motif group | geometric IL_4WF9_018 IL_51629.2 | |
IL_7AJU_056 | 1/D3/1122:1123, 1/D4/1:3 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
IL_7AJU_057 | 1/D3/1157:1160, 1/D3/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
IL_7AJU_058 | 1/D3/1173:1175, 1/D3/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
IL_7AJU_059 | 1/D3/1495:1498, 1/D3/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
IL_7AJU_060 | 1/D3/1540:1545, 1/D3/1566:1571 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
IL_7AJU_061 | 1/D3/1550:1552, 1/D3/1559:1561 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_95997.1 | |
IL_7AJU_062 | 1/D3/1650:1652, 1/D3/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
IL_7AJU_063 | 1/D3/1653:1658, 1/D3/1743:1747 | No text annotation Not in a motif group | ||
IL_7AJU_064 | 1/D3/1665:1667, 1/D3/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
IL_7AJU_065 | 1/D3/1669:1672, 1/D3/1729:1732 | Double sheared Not in a motif group | geometric IL_1SAQ_002 IL_09705.9 | |
IL_7AJU_066 | 1/D3/1672:1674, 1/D3/1727:1729 | No text annotation Not in a motif group | homologous IL_4V88_472 IL_95997.1 | |
IL_7AJU_067 | 1/D3/1675:1678, 1/D3/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.2 | |
IL_7AJU_068 | 1/D3/1678:1682, 1/D3/1719:1723 | No text annotation Not in a motif group | ||
IL_7AJU_069 | 1/D3/1687:1693, 1/D3/1708:1714 | No text annotation Not in a motif group | ||
IL_7AJU_070 | 1/D3/1693:1695, 1/D3/1706:1708 | No text annotation Not in a motif group | geometric IL_4LFB_006 IL_95997.1 | |
IL_7AJU_071 | 1/D4/78:85, 1/D4/325:329 | No text annotation Not in a motif group | ||
IL_7AJU_072 | 1/D4/97:98, 1/D4/317:319 | No text annotation Not in a motif group | ||
IL_7AJU_073 | 1/D4/111:115, 1/D4/252:259 | No text annotation Not in a motif group | ||
IL_7AJU_074 | 1/D4/139:142, 1/D4/169:171 | No text annotation Not in a motif group | ||
IL_7AJU_075 | 1/D4/144:146, 1/D4/166:167 | No text annotation Not in a motif group | ||
IL_7AJU_076 | 1/D4/148:150, 1/D4/163:164 | No text annotation Not in a motif group | ||
IL_7AJU_077 | 1/D4/177:178, 1/D4/187:189 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7AJU_001 | 1/D3/633:635, 1/D3/861:865, 1/D3/965:966 | No text annotation Not in a motif group | ||
J3_7AJU_002 | 1/D3/760:763, 1/D3/773:775, 1/D3/785:790 | No text annotation Not in a motif group | ||
J3_7AJU_003 | 1/D3/881:884, 1/D3/928:936, 1/D3/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
J3_7AJU_004 | 1/D3/1037:1039, 1/D3/1079:1083, 1/D3/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
J3_7AJU_005 | 1/D3/1150:1151, 1/D3/1627:1629, 1/D3/1636:1640 | No text annotation Not in a motif group | ||
J3_7AJU_006 | 1/D3/1168:1171, 1/D3/1468:1470, 1/D3/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
J3_7AJU_007 | 1/D3/1470:1474, 1/D3/1533:1540, 1/D3/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7AJU_008 | No text annotation |
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