3J7Z Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3J7Z_001 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_3J7Z_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_3J7Z_003 | 1/A/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_3J7Z_004 | 1/A/136:143 | No text annotation | ||
| HL_3J7Z_005 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_3J7Z_006 | 1/A/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_3J7Z_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_3J7Z_008 | 1/A/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_3J7Z_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_3J7Z_010 | 1/A/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_3J7Z_011 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_3J7Z_012 | 1/A/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_3J7Z_013 | 1/A/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_3J7Z_014 | 1/A/462:467 | GNRA | homologous HL_7A0S_015 HL_37824.7 | |
| HL_3J7Z_015 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_3J7Z_016 | 1/A/543:550 | No text annotation | homologous HL_5J7L_149 HL_09452.1 | |
| HL_3J7Z_017 | 1/A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.6 | |
| HL_3J7Z_018 | 1/A/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_3J7Z_019 | 1/A/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_3J7Z_020 | 1/A/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_3J7Z_021 | 1/A/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_3J7Z_022 | 1/A/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_3J7Z_023 | 1/A/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_3J7Z_024 | 1/A/826:831 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_3J7Z_026 | 1/A/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_3J7Z_027 | 1/A/978:985 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
| HL_3J7Z_028 | 1/A/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_3J7Z_029 | 1/A/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_3J7Z_030 | 1/A/1172:1177 | No text annotation | ||
| HL_3J7Z_031 | 1/A/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
| HL_3J7Z_032 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.6 | |
| HL_3J7Z_033 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_3J7Z_034 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_3J7Z_035 | 1/A/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_3J7Z_036 | 1/A/1451:1459 | Mini UNCG with extended bulge | geometric HL_5J7L_169 HL_22622.1 | |
| HL_3J7Z_037 | 1/A/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_3J7Z_038 | 1/A/1532:1539 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_3J7Z_039 | 1/A/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_3J7Z_040 | 1/A/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_3J7Z_041 | 1/A/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_3J7Z_042 | 1/A/1691:1696 | UNCG | geometric HL_5J7L_175 HL_34617.5 | |
| HL_3J7Z_043 | 1/A/1728:1731 | No text annotation | homologous HL_5J7L_176 HL_32346.3 | |
| HL_3J7Z_044 | 1/A/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_3J7Z_045 | 1/A/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_3J7Z_046 | 1/A/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_3J7Z_047 | 1/A/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_3J7Z_048 | 1/A/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_3J7Z_049 | 1/A/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_3J7Z_050 | 1/A/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_3J7Z_052 | 1/A/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_3J7Z_053 | 1/A/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
| HL_3J7Z_054 | 1/A/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_3J7Z_074 | 1/A/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_3J7Z_056 | 1/A/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_3J7Z_057 | 1/A/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_3J7Z_058 | 1/A/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.7 | |
| HL_3J7Z_059 | 1/A/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_3J7Z_060 | 1/A/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_3J7Z_061 | 1/A/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.3 | |
| HL_3J7Z_062 | 1/A/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_3J7Z_063 | 1/A/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.7 | |
| HL_3J7Z_064 | 1/A/2658:2663 | GNRA | homologous HL_7RQB_064 NA | |
| HL_3J7Z_065 | 1/A/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_3J7Z_066 | 1/A/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_3J7Z_072 | 1/A/2795:2801 | Other HL | homologous HL_5J7L_200 HL_08100.1 | |
| HL_3J7Z_067 | 1/A/2796:2799 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_3J7Z_068 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_3J7Z_069 | 1/A/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_3J7Z_073 | 1/B/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_3J7Z_070 | 1/B/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_3J7Z_071 | 1/B/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J7Z_025 | No text annotation | ||
| HL_3J7Z_051 | No text annotation | ||
| HL_3J7Z_055 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3J7Z_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
| IL_3J7Z_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.5 | |
| IL_3J7Z_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.2 | |
| IL_3J7Z_004 | 1/A/81:85, 1/A/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_3J7Z_006 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_3J7Z_007 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_3J7Z_008 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_3J7Z_009 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_3J7Z_011 | 1/A/274:281, 1/A/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_3J7Z_012 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_3J7Z_013 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_3J7Z_014 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_3J7Z_015 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_3J7Z_016 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_3J7Z_017 | 1/A/672:674, 1/A/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_3J7Z_018 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
| IL_3J7Z_019 | 1/A/697:698, 1/A/763:765 | Single bulged A | homologous IL_7A0S_016 IL_31462.5 | |
| IL_3J7Z_020 | 1/A/702:703, 1/A/728:730 | Single bulged G | geometric IL_5J7L_262 IL_00225.13 | |
| IL_3J7Z_021 | 1/A/703:707, 1/A/724:728 | Triple sheared | homologous IL_5J7L_263 IL_50730.2 | |
| IL_3J7Z_022 | 1/A/738:740, 1/A/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_3J7Z_023 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_3J7Z_024 | 1/A/837:838, 1/A/940:942 | Single stack bend | homologous IL_4WF9_028 IL_90729.1 | |
| IL_3J7Z_025 | 1/A/844:847, 1/A/933:934 | Other IL | homologous IL_5J7L_267 IL_90729.1 | |
| IL_3J7Z_117 | 1/A/844:848, 1/A/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_3J7Z_026 | 1/A/847:848, 1/A/930:933 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_3J7Z_027 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_3J7Z_028 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_3J7Z_029 | 1/A/862:863, 1/A/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.13 | |
| IL_3J7Z_030 | 1/A/864:868, 1/A/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_3J7Z_031 | 1/A/870:872, 1/A/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_3J7Z_032 | 1/A/875:879, 1/A/898:902 | Triple sheared | geometric IL_5J7L_274 IL_17948.2 | |
| IL_3J7Z_033 | 1/A/879:881, 1/A/895:898 | Isolated non-canonical cWW pair | geometric IL_5B2P_002 IL_07785.1 | |
| IL_3J7Z_034 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_3J7Z_035 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_3J7Z_036 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | geometric IL_4WF9_037 IL_41203.4 | |
| IL_3J7Z_037 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_3J7Z_038 | 1/A/1018:1024, 1/A/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_3J7Z_039 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_3J7Z_040 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_3J7Z_041 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_3J7Z_042 | 1/A/1043:1051, 1/A/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_3J7Z_043 | 1/A/1059:1062, 1/A/1076:1079 | No text annotation | homologous IL_5J7L_285 IL_92446.2 | |
| IL_3J7Z_044 | 1/A/1087:1090, 1/A/1101:1102 | Major groove platform | geometric IL_4V9F_044 IL_48076.6 | |
| IL_3J7Z_046 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_3J7Z_047 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_3J7Z_048 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_3J7Z_049 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_3J7Z_050 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_3J7Z_051 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_3J7Z_052 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_3J7Z_053 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_3J7Z_054 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_3J7Z_055 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_3J7Z_056 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_3J7Z_057 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_3J7Z_058 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_3J7Z_059 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_3J7Z_060 | 1/A/1474:1479, 1/A/1512:1517 | No text annotation | ||
| IL_3J7Z_061 | 1/A/1481:1482, 1/A/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_3J7Z_062 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.5 | |
| IL_3J7Z_063 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_3J7Z_064 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_3J7Z_065 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_3J7Z_066 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_3J7Z_118 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_3J7Z_067 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 IL_76758.2 | |
| IL_3J7Z_068 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_3J7Z_069 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_3J7Z_070 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_3J7Z_072 | 1/A/1727:1728, 1/A/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_3J7Z_073 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.5 | |
| IL_3J7Z_074 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_3J7Z_075 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_3J7Z_076 | 1/A/1841:1842, 1/A/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_3J7Z_077 | 1/A/1846:1849, 1/A/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_3J7Z_120 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_3J7Z_078 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_3J7Z_079 | 1/A/1933:1934, 1/A/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.3 | |
| IL_3J7Z_080 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_3J7Z_081 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | geometric IL_5J7L_320 IL_48076.6 | |
| IL_3J7Z_083 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_3J7Z_084 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_3J7Z_085 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.2 | |
| IL_3J7Z_086 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_3J7Z_087 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_3J7Z_088 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_3J7Z_089 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_3J7Z_090 | 1/A/2401:2403, 1/A/2414:2415 | Single bulged U | geometric IL_7PMM_002 IL_89505.4 | |
| IL_3J7Z_091 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_3J7Z_092 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_3J7Z_093 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform | geometric IL_7A0S_085 IL_48076.6 | |
| IL_3J7Z_094 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 IL_51387.2 | |
| IL_3J7Z_095 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_3J7Z_096 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_3J7Z_097 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_3J7Z_098 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_3J7Z_099 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_3J7Z_100 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_3J7Z_101 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_3J7Z_102 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_3J7Z_103 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_3J7Z_104 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_3J7Z_105 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_3J7Z_106 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_3J7Z_107 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A | geometric IL_4WF9_022 IL_31462.5 | |
| IL_3J7Z_108 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_3J7Z_109 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_3J7Z_110 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_3J7Z_111 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_3J7Z_112 | 1/B/17:18, 1/B/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.5 | |
| IL_3J7Z_113 | 1/B/23:28, 1/B/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_3J7Z_114 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_3J7Z_115 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_3J7Z_116 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J7Z_005 | No text annotation | ||
| IL_3J7Z_010 | Isolated non-canonical cWW pair | ||
| IL_3J7Z_045 | No text annotation | ||
| IL_3J7Z_071 | Isolated cWH basepair | ||
| IL_3J7Z_119 | Isolated non-canonical cWW pair | ||
| IL_3J7Z_082 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3J7Z_011 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | geometric J3_5J7L_036 J3_60031.2 | |
| J3_3J7Z_015 | 1/A/30:31, 1/A/474:484, 1/A/496:510 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
| J3_3J7Z_016 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_3J7Z_012 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_3J7Z_017 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_3J7Z_001 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_3J7Z_002 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
| J3_3J7Z_018 | 1/A/1055:1057, 1/A/1081:1087, 1/A/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_3J7Z_004 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_3J7Z_005 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_3J7Z_013 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_3J7Z_019 | 1/A/1424:1429, 1/A/1564:1565, 1/A/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_3J7Z_006 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_3J7Z_020 | 1/A/2282:2284, 1/A/2384:2395, 1/A/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_3J7Z_007 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_3J7Z_008 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_3J7Z_014 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_3J7Z_009 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_3J7Z_010 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J4_3J7Z_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_3J7Z_002 | 1/A/297:301, 1/A/316:319, 1/A/323:325, 1/A/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_3J7Z_003 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_3J7Z_004 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_3J7Z_005 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_3J7Z_006 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_3J7Z_007 | 1/A/1444:1445, 1/A/1466:1467, 1/A/1525:1526, 1/A/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_3J7Z_008 | 1/A/1772:1776, 1/A/1788:1792, 1/A/1827:1830, 1/A/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_3J7Z_009 | 1/A/1833:1835, 1/A/1905:1906, 1/A/1924:1933, 1/A/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_3J7Z_010 | 1/A/2285:2289, 1/A/2343:2347, 1/A/2370:2372, 1/A/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_3J7Z_011 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_3J7Z_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:150, 1/A/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_3J7Z_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_3J7Z_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_3J7Z_004 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_3J7Z_005 | 1/A/2057:2064, 1/A/2446:2453, 1/A/2500:2507, 1/A/2582:2588, 1/A/2606:2611 | No text annotation | ||
| J5_3J7Z_006 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2282, 1/A/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_3J7Z_001 | 1/A/45:46, 1/A/179:183, 1/A/214:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J6_3J7Z_002 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2284, 1/A/2384:2395, 1/A/2421:2435 | No text annotation | ||
| J7_3J7Z_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_3J7Z_002 | 1/A/817:822, 1/A/835:837, 1/A/942:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J7Z_003 | No text annotation |
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