6EM1 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6EM1_001 | 1/1/31:53 | No text annotation Not in a motif group | ||
| HL_6EM1_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_6EM1_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_6EM1_004 | 1/1/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_98426.1 | |
| HL_6EM1_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_6EM1_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_6EM1_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_6EM1_008 | 1/1/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_6EM1_010 | 1/1/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_6EM1_011 | 1/1/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_6EM1_013 | 1/1/542:549 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6EM1_014 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_6EM1_015 | 1/1/640:649 | No text annotation Not in a motif group | ||
| HL_6EM1_016 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_03345.1 | |
| HL_6EM1_017 | 1/1/707:712 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_6EM1_018 | 1/1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_6EM1_021 | 1/1/956:965 | No text annotation Not in a motif group | ||
| HL_6EM1_023 | 1/1/1126:1132 | No text annotation Not in a motif group | ||
| HL_6EM1_024 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_6EM1_028 | 1/1/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_6EM1_031 | 1/1/2840:2848 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_6EM1_032 | 1/1/2897:2904 | No text annotation Not in a motif group | homologous HL_8C3A_063 HL_88526.2 | |
| HL_6EM1_033 | 1/1/2918:2928 | No text annotation Not in a motif group | ||
| HL_6EM1_034 | 1/1/3025:3030 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.1 | |
| HL_6EM1_035 | 1/1/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_6EM1_036 | 1/1/3110:3124 | No text annotation Not in a motif group | ||
| HL_6EM1_037 | 1/1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_6EM1_038 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_6EM1_039 | 1/1/3303:3311 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_6EM1_040 | 1/1/3350:3353 | No text annotation Not in a motif group | homologous HL_5TBW_071 HL_53837.1 | |
| HL_6EM1_041 | 1/2/69:89 | No text annotation Not in a motif group | ||
| HL_6EM1_042 | 1/2/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_6EM1_043 | 1/2/124:129 | No text annotation Not in a motif group | ||
| HL_6EM1_044 | 1/6/11:17 | No text annotation Not in a motif group | ||
| HL_6EM1_045 | 1/6/38:42 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6EM1_009 | No text annotation | ||
| HL_6EM1_012 | No text annotation | ||
| HL_6EM1_019 | No text annotation | ||
| HL_6EM1_020 | No text annotation | ||
| HL_6EM1_022 | No text annotation | ||
| HL_6EM1_025 | No text annotation | ||
| HL_6EM1_026 | No text annotation | ||
| HL_6EM1_027 | No text annotation | ||
| HL_6EM1_029 | No text annotation | ||
| HL_6EM1_030 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6EM1_001 | 1/1/7:8, 1/2/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_6EM1_002 | 1/1/13:15, 1/2/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_6EM1_003 | 1/1/27:28, 1/1/56:58 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_6EM1_004 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_6EM1_005 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.2 | |
| IL_6EM1_006 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_6EM1_007 | 1/1/164:166, 1/1/256:257 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_6EM1_008 | 1/1/169:171, 1/1/247:253 | No text annotation Not in a motif group | ||
| IL_6EM1_009 | 1/1/177:179, 1/1/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_6EM1_010 | 1/1/189:191, 1/1/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_6EM1_011 | 1/1/337:339, 1/2/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_6EM1_012 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_6EM1_013 | 1/1/404:410, 1/2/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_6EM1_014 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_6EM1_017 | 1/1/512:513, 1/1/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_6EM1_018 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_6EM1_019 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_6EM1_020 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_6EM1_021 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_6EM1_022 | 1/1/725:728, 1/1/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.1 | |
| IL_6EM1_023 | 1/1/752:753, 1/1/779:781 | Single bulged A Not in a motif group | geometric IL_7A0S_002 IL_37497.2 | |
| IL_6EM1_024 | 1/1/755:757, 1/1/774:777 | No text annotation Not in a motif group | geometric IL_4QIK_001 IL_74697.1 | |
| IL_6EM1_025 | 1/1/803:805, 1/1/938:940 | No text annotation Not in a motif group | homologous IL_5TBW_027 IL_95997.1 | |
| IL_6EM1_026 | 1/1/805:809, 1/1/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_6EM1_027 | 1/1/969:970, 1/1/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_6EM1_028 | 1/1/972:974, 1/1/1107:1109 | No text annotation Not in a motif group | geometric IL_3GM7_002 IL_95997.1 | |
| IL_6EM1_029 | 1/1/975:982, 1/1/1101:1106 | No text annotation Not in a motif group | ||
| IL_6EM1_030 | 1/1/983:985, 1/1/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_6EM1_031 | 1/1/986:987, 1/1/1062:1098 | No text annotation Not in a motif group | ||
| IL_6EM1_032 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_6EM1_033 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_6EM1_034 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5TBW_049 IL_15861.7 | |
| IL_6EM1_035 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | homologous IL_5TBW_050 IL_83039.13 | |
| IL_6EM1_036 | 1/1/1186:1194, 1/1/1314:1320 | No text annotation Not in a motif group | ||
| IL_6EM1_037 | 1/1/1194:1206, 1/1/1298:1314 | No text annotation Not in a motif group | ||
| IL_6EM1_038 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_6EM1_039 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.4 | |
| IL_6EM1_041 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_6EM1_042 | 1/1/1385:1387, 1/1/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_6EM1_043 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_6EM1_044 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | geometric IL_4V9F_002 IL_37497.2 | |
| IL_6EM1_045 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
| IL_6EM1_046 | 1/1/2391:2394, 1/1/2986:2988 | Self complementary Not in a motif group | geometric IL_5M0H_001 IL_82068.2 | |
| IL_6EM1_047 | 1/1/2833:2839, 1/1/2849:2855 | No text annotation Not in a motif group | ||
| IL_6EM1_048 | 1/1/2878:2882, 1/1/2940:2948 | No text annotation Not in a motif group | ||
| IL_6EM1_049 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_6EM1_050 | 1/1/2891:2892, 1/1/2909:2912 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_111 IL_95601.3 | |
| IL_6EM1_051 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_6EM1_052 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_6EM1_053 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_6EM1_054 | 1/1/3047:3053, 1/1/3089:3094 | No text annotation Not in a motif group | ||
| IL_6EM1_055 | 1/1/3053:3059, 1/1/3084:3089 | No text annotation Not in a motif group | ||
| IL_6EM1_056 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_6EM1_057 | 1/1/3103:3107, 1/1/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_6EM1_058 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_6EM1_059 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_6EM1_060 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_6EM1_061 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_6EM1_062 | 1/1/3233:3235, 1/1/3252:3254 | No text annotation Not in a motif group | homologous IL_5TBW_127 IL_95997.1 | |
| IL_6EM1_063 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4UYK_003 IL_30621.2 | |
| IL_6EM1_064 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_128 IL_30621.2 | |
| IL_6EM1_065 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U Not in a motif group | homologous IL_5TBW_130 IL_83039.13 | |
| IL_6EM1_066 | 1/1/3324:3325, 1/1/3381:3383 | No text annotation Not in a motif group | homologous IL_8C3A_137 IL_83039.13 | |
| IL_6EM1_067 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_6EM1_068 | 1/1/3331:3337, 1/1/3367:3372 | No text annotation Not in a motif group | ||
| IL_6EM1_069 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U Not in a motif group | geometric IL_4KZD_001 IL_83039.13 | |
| IL_6EM1_070 | 1/1/3342:3345, 1/1/3360:3363 | tWS-tSW Not in a motif group | homologous IL_5TBW_135 IL_09705.9 | |
| IL_6EM1_071 | 1/1/3349:3350, 1/1/3353:3356 | No text annotation Not in a motif group | homologous IL_8C3A_142 IL_59677.2 | |
| IL_6EM1_072 | 1/2/44:64, 1/2/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_6EM1_073 | 1/2/64:66, 1/2/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_82068.2 | |
| IL_6EM1_074 | 1/2/68:69, 1/2/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 | |
| IL_6EM1_075 | 1/6/26:27, 1/6/51:54 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_6EM1_076 | 1/6/30:34, 1/6/45:48 | No text annotation Not in a motif group | ||
| IL_6EM1_077 | 1/6/36:38, 1/6/42:43 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6EM1_015 | No text annotation | ||
| IL_6EM1_016 | No text annotation | ||
| IL_6EM1_040 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6EM1_001 | 1/1/369:376, 1/1/403:404, 1/2/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6EM1_002 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_6EM1_003 | 1/1/661:663, 1/1/799:802, 1/1/941:942 | No text annotation Not in a motif group | ||
| J3_6EM1_005 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_6EM1_006 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6EM1_004 | No text annotation |
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