7UG6 | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_7UG6_005 ➜	1/1/194:201	NA	NA
2	HL_7UG6_006 ➜	1/1/208:212	NA	NA
3	HL_7UG6_007 ➜	1/1/216:224	NA	NA
4	HL_7UG6_013 ➜	1/1/599:604	NA	NA
5	HL_7UG6_068 ➜	1/1/3194:3197	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_7UG6_001 ➜	missing nts	NA
2	HL_7UG6_002 ➜	missing nts	NA
3	HL_7UG6_003 ➜	missing nts	NA
4	HL_7UG6_004 ➜	missing nts	NA
5	HL_7UG6_008 ➜	missing nts	NA
6	HL_7UG6_009 ➜	missing nts	NA
7	HL_7UG6_010 ➜	missing nts	NA
8	HL_7UG6_011 ➜	missing nts	NA
9	HL_7UG6_012 ➜	missing nts	NA
10	HL_7UG6_014 ➜	missing nts	NA
11	HL_7UG6_015 ➜	missing nts	NA
12	HL_7UG6_016 ➜	missing nts	NA
13	HL_7UG6_017 ➜	missing nts	NA
14	HL_7UG6_018 ➜	missing nts	NA
15	HL_7UG6_019 ➜	missing nts	NA
16	HL_7UG6_020 ➜	missing nts	NA
17	HL_7UG6_021 ➜	missing nts	NA
18	HL_7UG6_022 ➜	missing nts	NA
19	HL_7UG6_023 ➜	missing nts	NA
20	HL_7UG6_024 ➜	missing nts	NA
21	HL_7UG6_025 ➜	missing nts	NA
22	HL_7UG6_026 ➜	missing nts	NA
23	HL_7UG6_027 ➜	missing nts	NA
24	HL_7UG6_028 ➜	missing nts	NA
25	HL_7UG6_029 ➜	missing nts	NA
26	HL_7UG6_030 ➜	missing nts	NA
27	HL_7UG6_031 ➜	missing nts	NA
28	HL_7UG6_032 ➜	missing nts	NA
29	HL_7UG6_033 ➜	missing nts	NA
30	HL_7UG6_034 ➜	missing nts	NA
31	HL_7UG6_035 ➜	missing nts	NA
32	HL_7UG6_036 ➜	missing nts	NA
33	HL_7UG6_037 ➜	missing nts	NA
34	HL_7UG6_038 ➜	missing nts	NA
35	HL_7UG6_039 ➜	missing nts	NA
36	HL_7UG6_040 ➜	missing nts	NA
37	HL_7UG6_041 ➜	missing nts	NA
38	HL_7UG6_042 ➜	missing nts	NA
39	HL_7UG6_043 ➜	missing nts	NA
40	HL_7UG6_044 ➜	missing nts	NA
41	HL_7UG6_045 ➜	missing nts	NA
42	HL_7UG6_046 ➜	missing nts	NA
43	HL_7UG6_047 ➜	missing nts	NA
44	HL_7UG6_048 ➜	missing nts	NA
45	HL_7UG6_049 ➜	missing nts	NA
46	HL_7UG6_050 ➜	missing nts	NA
47	HL_7UG6_051 ➜	missing nts	NA
48	HL_7UG6_052 ➜	missing nts	NA
49	HL_7UG6_053 ➜	missing nts	NA
50	HL_7UG6_054 ➜	missing nts	NA
51	HL_7UG6_055 ➜	missing nts	NA
52	HL_7UG6_056 ➜	missing nts	NA
53	HL_7UG6_057 ➜	missing nts	NA
54	HL_7UG6_058 ➜	missing nts	NA
55	HL_7UG6_059 ➜	missing nts	NA
56	HL_7UG6_060 ➜	missing nts	NA
57	HL_7UG6_061 ➜	missing nts	NA
58	HL_7UG6_062 ➜	missing nts	NA
59	HL_7UG6_063 ➜	missing nts	NA
60	HL_7UG6_064 ➜	missing nts	NA
61	HL_7UG6_065 ➜	missing nts	NA
62	HL_7UG6_066 ➜	missing nts	NA
63	HL_7UG6_067 ➜	missing nts	NA
64	HL_7UG6_069 ➜	missing nts	NA
65	HL_7UG6_070 ➜	missing nts	NA
66	HL_7UG6_071 ➜	missing nts	NA
67	HL_7UG6_072 ➜	missing nts	NA
68	HL_7UG6_073 ➜	missing nts	NA
69	HL_7UG6_074 ➜	missing nts	NA
70	HL_7UG6_075 ➜	missing nts	NA
71	HL_7UG6_076 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_7UG6_012 ➜	1/1/337:339,1/2/25:26	NA	NA
2	IL_7UG6_013 ➜	1/1/376:379,1/1/390:403	NA	NA
3	IL_7UG6_014 ➜	1/1/404:410,1/2/13:19	NA	NA
4	IL_7UG6_017 ➜	1/1/512:513,1/1/577:579	NA	NA
5	IL_7UG6_018 ➜	1/1/517:525,1/1/567:573	NA	NA
6	IL_7UG6_019 ➜	1/1/531:538,1/1/553:561	NA	NA
7	IL_7UG6_021 ➜	1/1/680:684,1/1/696:700	NA	NA
8	IL_7UG6_033 ➜	1/1/954:956,1/1/965:967	NA	NA
9	IL_7UG6_034 ➜	1/1/969:970,1/1/1111:1113	NA	NA
10	IL_7UG6_035 ➜	1/1/972:976,1/1/1106:1109	NA	NA
11	IL_7UG6_037 ➜	1/1/983:985,1/1/1099:1100	NA	NA
12	IL_7UG6_039 ➜	1/1/1120:1122,1/1/1136:1138	NA	NA
13	IL_7UG6_040 ➜	1/1/1167:1171,1/1/1328:1332	NA	NA
14	IL_7UG6_041 ➜	1/1/1173:1180,1/1/1325:1326	NA	NA
15	IL_7UG6_042 ➜	1/1/1180:1182,1/1/1324:1325	NA	NA
16	IL_7UG6_049 ➜	1/1/1376:1378,1/1/1428:1431	NA	NA
17	IL_7UG6_050 ➜	1/1/1385:1387,1/1/1420:1421	NA	NA
18	IL_7UG6_099 ➜	1/1/3164:3166,1/1/3284:3286	NA	NA
19	IL_7UG6_101 ➜	1/1/3177:3179,1/1/3210:3211	NA	NA
20	IL_7UG6_102 ➜	1/1/3179:3188,1/1/3204:3210	NA	NA
21	IL_7UG6_103 ➜	1/1/3193:3194,1/1/3197:3199	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_7UG6_001 ➜	missing nts	NA
2	IL_7UG6_002 ➜	missing nts	NA
3	IL_7UG6_003 ➜	missing nts	NA
4	IL_7UG6_004 ➜	missing nts	NA
5	IL_7UG6_005 ➜	missing nts	NA
6	IL_7UG6_006 ➜	missing nts	NA
7	IL_7UG6_007 ➜	missing nts	NA
8	IL_7UG6_008 ➜	missing nts	NA
9	IL_7UG6_009 ➜	missing nts	NA
10	IL_7UG6_010 ➜	missing nts	NA
11	IL_7UG6_011 ➜	missing nts	NA
12	IL_7UG6_015 ➜	missing nts	NA
13	IL_7UG6_016 ➜	missing nts	NA
14	IL_7UG6_020 ➜	missing nts	NA
15	IL_7UG6_022 ➜	missing nts	NA
16	IL_7UG6_023 ➜	missing nts	NA
17	IL_7UG6_024 ➜	missing nts	NA
18	IL_7UG6_025 ➜	missing nts	NA
19	IL_7UG6_026 ➜	missing nts	NA
20	IL_7UG6_027 ➜	missing nts	NA
21	IL_7UG6_028 ➜	missing nts	NA
22	IL_7UG6_029 ➜	missing nts	NA
23	IL_7UG6_030 ➜	missing nts	NA
24	IL_7UG6_031 ➜	missing nts	NA
25	IL_7UG6_032 ➜	missing nts	NA
26	IL_7UG6_036 ➜	missing nts	NA
27	IL_7UG6_038 ➜	missing nts	NA
28	IL_7UG6_043 ➜	missing nts	NA
29	IL_7UG6_044 ➜	missing nts	NA
30	IL_7UG6_045 ➜	missing nts	NA
31	IL_7UG6_046 ➜	missing nts	NA
32	IL_7UG6_047 ➜	missing nts	NA
33	IL_7UG6_048 ➜	missing nts	NA
34	IL_7UG6_051 ➜	missing nts	NA
35	IL_7UG6_052 ➜	missing nts	NA
36	IL_7UG6_053 ➜	missing nts	NA
37	IL_7UG6_054 ➜	missing nts	NA
38	IL_7UG6_055 ➜	missing nts	NA
39	IL_7UG6_056 ➜	missing nts	NA
40	IL_7UG6_057 ➜	missing nts	NA
41	IL_7UG6_058 ➜	missing nts	NA
42	IL_7UG6_059 ➜	missing nts	NA
43	IL_7UG6_060 ➜	missing nts	NA
44	IL_7UG6_061 ➜	missing nts	NA
45	IL_7UG6_062 ➜	missing nts	NA
46	IL_7UG6_063 ➜	missing nts	NA
47	IL_7UG6_064 ➜	missing nts	NA
48	IL_7UG6_065 ➜	missing nts	NA
49	IL_7UG6_066 ➜	missing nts	NA
50	IL_7UG6_067 ➜	missing nts	NA
51	IL_7UG6_068 ➜	missing nts	NA
52	IL_7UG6_069 ➜	missing nts	NA
53	IL_7UG6_070 ➜	missing nts	NA
54	IL_7UG6_071 ➜	missing nts	NA
55	IL_7UG6_072 ➜	missing nts	NA
56	IL_7UG6_073 ➜	missing nts	NA
57	IL_7UG6_074 ➜	missing nts	NA
58	IL_7UG6_075 ➜	missing nts	NA
59	IL_7UG6_076 ➜	missing nts	NA
60	IL_7UG6_077 ➜	missing nts	NA
61	IL_7UG6_078 ➜	missing nts	NA
62	IL_7UG6_079 ➜	missing nts	NA
63	IL_7UG6_080 ➜	missing nts	NA
64	IL_7UG6_081 ➜	missing nts	NA
65	IL_7UG6_082 ➜	missing nts	NA
66	IL_7UG6_083 ➜	missing nts	NA
67	IL_7UG6_084 ➜	missing nts	NA
68	IL_7UG6_085 ➜	missing nts	NA
69	IL_7UG6_086 ➜	missing nts	NA
70	IL_7UG6_087 ➜	missing nts	NA
71	IL_7UG6_088 ➜	missing nts	NA
72	IL_7UG6_089 ➜	missing nts	NA
73	IL_7UG6_090 ➜	missing nts	NA
74	IL_7UG6_091 ➜	missing nts	NA
75	IL_7UG6_092 ➜	missing nts	NA
76	IL_7UG6_093 ➜	missing nts	NA
77	IL_7UG6_094 ➜	missing nts	NA
78	IL_7UG6_095 ➜	missing nts	NA
79	IL_7UG6_096 ➜	missing nts	NA
80	IL_7UG6_097 ➜	missing nts	NA
81	IL_7UG6_098 ➜	missing nts	NA
82	IL_7UG6_100 ➜	missing nts	NA
83	IL_7UG6_104 ➜	missing nts	NA
84	IL_7UG6_105 ➜	missing nts	NA
85	IL_7UG6_106 ➜	missing nts	NA
86	IL_7UG6_107 ➜	missing nts	NA
87	IL_7UG6_108 ➜	missing nts	NA
88	IL_7UG6_109 ➜	missing nts	NA
89	IL_7UG6_110 ➜	missing nts	NA
90	IL_7UG6_111 ➜	missing nts	NA
91	IL_7UG6_112 ➜	missing nts	NA
92	IL_7UG6_113 ➜	missing nts	NA
93	IL_7UG6_114 ➜	missing nts	NA
94	IL_7UG6_115 ➜	missing nts	NA
95	IL_7UG6_116 ➜	missing nts	NA
96	IL_7UG6_117 ➜	missing nts	NA
97	IL_7UG6_118 ➜	missing nts	NA
98	IL_7UG6_119 ➜	missing nts	NA
99	IL_7UG6_120 ➜	missing nts	NA
100	IL_7UG6_121 ➜	missing nts	NA
101	IL_7UG6_122 ➜	missing nts	NA
102	IL_7UG6_123 ➜	missing nts	NA
103	IL_7UG6_124 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_7UG6_003 ➜	1/1/502:503,1/1/588:597,1/1/606:611	NA	NA
2	J3_7UG6_006 ➜	1/1/986:987,1/1/1062:1066,1/1/1092:1098	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_7UG6_001 ➜	missing nts	NA
2	J3_7UG6_002 ➜	missing nts	NA
3	J3_7UG6_004 ➜	missing nts	NA
4	J3_7UG6_005 ➜	missing nts	NA
5	J3_7UG6_007 ➜	missing nts	NA
6	J3_7UG6_008 ➜	missing nts	NA
7	J3_7UG6_009 ➜	missing nts	NA
8	J3_7UG6_010 ➜	missing nts	NA
9	J3_7UG6_011 ➜	missing nts	NA
10	J3_7UG6_012 ➜	missing nts	NA
11	J3_7UG6_013 ➜	missing nts	NA
12	J3_7UG6_014 ➜	missing nts	NA
13	J3_7UG6_015 ➜	missing nts	NA
14	J3_7UG6_016 ➜	missing nts	NA
15	J3_7UG6_017 ➜	missing nts	NA

7UG6 Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops