JAR3D
Query RF03064-CCF-3.48 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 3 Hairpin loop
Column numbers: 20-23 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.
Scored sequences and counts
CAAA 599
AACU 294
AAA- 202
AAAA 69
CAA- 33
AACC 31
GAAC 30
UAAA 20
GACC 13
GAAA 11
AAG- 9
ACAA 7
AAU- 7
CCA- 7
GAUC 6
AA-- 5
AAAC 4
AAAU 4
AAGA 4
AAUU 4
CAGA 4
GUUG 4
AACA 3
CAAC 3
GGAU 3
-AAA 3
AGCU 2
AUCA 2
CCAU 2
CGAA 2
GAAU 2
ACC- 2
CAG- 2
UAA- 2
CA-- 2
AAAG 1
AAUC 1
ACGA 1
AUAA 1
AUCU 1
CAAG 1
CACA 1
CAUA 1
CAUC 1
CCAA 1
UACU 1
AAC- 1
ACA- 1
ACU- 1
AGA- 1
GAA- 1
GGA- 1
UAU- 1
UCA- 1
A--A 1
GA-- 1
GC-- 1
Omitted sequenced and counts
--A- 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_69353.6
Basepair signature:
|
98.31 | 44.08 | 2 | 0 |
Mini UNCG |
| 2 |
Motif group HL_46546.1
Basepair signature:
|
25.79 | -49.64 | 3 | 2 |
|
| 3 |
Motif group HL_18722.1
Basepair signature:
|
25.72 | -54.74 | 3 | 2 |
Mini UNCG |
| 4 |
Motif group HL_22447.1
Basepair signature:
|
5.71 | -37.26 | 4 | 2 |
|
| 5 |
Motif group HL_98557.4
Basepair signature:
|
4.72 | -77.42 | 2 | 1 |
|
| 6 |
Motif group HL_05667.1
Basepair signature:
|
4.51 | -96.81 | 4 | 2 |
|
| 7 |
Motif group HL_57052.2
Basepair signature:
|
3.95 | -38.29 | 2 | 1 |
Mini UNCG |
| 8 |
Motif group HL_36982.3
Basepair signature:
|
0.78 | -63.36 | 3 | 2 |
Mini UNCG |
| 9 |
Motif group HL_61984.1
Basepair signature:
|
0.28 | -64.65 | 4 | 3 |
|
| 10 |
Motif group HL_99223.1
Basepair signature:
|
0.28 | -77.03 | 2 | 2 |
|
| 11 |
Motif group HL_60914.1
Basepair signature:
|
0.07 | -72.27 | 4 | 3 |
|
| 12 |
Motif group HL_95237.1
Basepair signature:
|
0.07 | -100.07 | 4 | 3 |
|
| 13 |
Motif group HL_53987.3
Basepair signature:
|
0.00 | -75.32 | 4 | 2 |
UNCG related |
| 14 |
Motif group HL_96776.2
Basepair signature:
|
0.00 | -79.76 | 3 | 2 |
|
| 15 |
Motif group HL_68304.6
Basepair signature:
|
0.00 | -99.71 | 3 | 2 |
GNRA |
| 16 |
Motif group HL_06569.1
Basepair signature:
|
0.00 | -103.63 | 3 | 2 |
|
| 17 |
Motif group HL_69818.1
Basepair signature:
|
0.00 | -105.54 | 4 | 2 |
|
| 18 |
Motif group HL_04891.1
Basepair signature:
|
0.00 | -109.65 | 3 | 2 |
|
| 19 |
Motif group HL_32527.2
Basepair signature:
|
0.00 | -112.50 | 3 | 2 |
GNRA related |
| 20 |
Motif group HL_93229.1
Basepair signature:
|
0.00 | -116.37 | 5 | 4 |
|
| 21 |
Motif group HL_16845.5
Basepair signature:
|
0.00 | -118.96 | 5 | 3 |
|
| 22 |
Motif group HL_33507.2
Basepair signature:
|
0.00 | -119.78 | 4 | 3 |
|
| 23 |
Motif group HL_37407.1
Basepair signature:
|
0.00 | -122.87 | 5 | 3 |
|
| 24 |
Motif group HL_44781.1
Basepair signature:
|
0.00 | -127.71 | 4 | 2 |
|
| 25 |
Motif group HL_18495.1
Basepair signature:
|
0.00 | -132.19 | 6 | 5 |
|
| 26 |
Motif group HL_43527.1
Basepair signature:
|
0.00 | -133.39 | 4 | 3 |
|
| 27 |
Motif group HL_16898.2
Basepair signature:
|
0.00 | -134.36 | 4 | 3 |
UNCG |
| 28 |
Motif group HL_79299.9
Basepair signature:
|
0.00 | -135.50 | 3 | 2 |
UNCG |
| 29 |
Motif group HL_02361.5
Basepair signature:
|
0.00 | -137.70 | 3 | 2 |
GNRA |
| 30 |
Motif group HL_63285.1
Basepair signature:
|
0.00 | -139.03 | 5 | 4 |
T-loop related |
| 31 |
Motif group HL_43074.14
Basepair signature:
|
0.00 | -139.23 | 2 | 2 |
GNRA |
| 32 |
Motif group HL_15942.4
Basepair signature:
|
0.00 | -139.91 | 3 | 2 |
|
| 33 |
Motif group HL_35894.3
Basepair signature:
|
0.00 | -141.71 | 3 | 2 |
|
| 34 |
Motif group HL_69774.3
Basepair signature:
|
0.00 | -144.98 | 3 | 2 |
Fab BL3-6 binding hairpin with tSW |
| 35 |
Motif group HL_34974.1
Basepair signature:
|
0.00 | -145.78 | 5 | 4 |
UNCG variation |
| 36 |
Motif group HL_18218.2
Basepair signature:
|
0.00 | -148.06 | 4 | 3 |
|
| 37 |
Motif group HL_53760.2
Basepair signature:
|
0.00 | -151.02 | 5 | 4 |
|
| 38 |
Motif group HL_17899.1
Basepair signature:
|
0.00 | -152.01 | 6 | 5 |
|
| 39 |
Motif group HL_60140.1
Basepair signature:
|
0.00 | -154.49 | 5 | 4 |
|
| 40 |
Motif group HL_12053.1
Basepair signature:
|
0.00 | -154.87 | 4 | 3 |
|
| 41 |
Motif group HL_01472.3
Basepair signature:
|
0.00 | -160.39 | 6 | 5 |
|
| 42 |
Motif group HL_76406.3
Basepair signature:
|
0.00 | -161.32 | 5 | 5 |
|
| 43 |
Motif group HL_56387.1
Basepair signature:
|
0.00 | -161.90 | 5 | 3 |
|
| 44 |
Motif group HL_77081.1
Basepair signature:
|
0.00 | -168.04 | 4 | 3 |
UNCG variation |
| 45 |
Motif group HL_22515.1
Basepair signature:
|
0.00 | -169.95 | 3 | 2 |
|
| 46 |
Motif group HL_27335.1
Basepair signature:
|
0.00 | -170.74 | 6 | 5 |
|
| 47 |
Motif group HL_94352.4
Basepair signature:
|
0.00 | -170.90 | 3 | 1 |
|
| 48 |
Motif group HL_86769.2
Basepair signature:
|
0.00 | -172.53 | 5 | 4 |
|
| 49 |
Motif group HL_08002.5
Basepair signature:
|
0.00 | -172.70 | 6 | 4 |
T-loop with unstacked turn |
| 50 |
Motif group HL_00996.1
Basepair signature:
|
0.00 | -173.29 | 5 | 4 |
|
| 51 |
Motif group HL_78457.3
Basepair signature:
|
0.00 | -175.10 | 6 | 5 |
|
| 52 |
Motif group HL_06645.1
Basepair signature:
|
0.00 | -178.59 | 5 | 4 |
|
| 53 |
Motif group HL_25660.1
Basepair signature:
|
0.00 | -179.38 | 4 | 3 |
|
| 54 |
Motif group HL_37694.1
Basepair signature:
|
0.00 | -179.77 | 6 | 5 |
T-loop related |
| 55 |
Motif group HL_02906.1
Basepair signature:
|
0.00 | -180.05 | 4 | 2 |
|
| 56 |
Motif group HL_05832.1
Basepair signature:
|
0.00 | -180.09 | 5 | 5 |
|
| 57 |
Motif group HL_68529.1
Basepair signature:
|
0.00 | -182.51 | 5 | 3 |
Mini UNCG |
| 58 |
Motif group HL_20743.2
Basepair signature:
|
0.00 | -187.62 | 5 | 5 |
|
| 59 |
Motif group HL_92304.3
Basepair signature:
|
0.00 | -188.12 | 7 | 7 |
|
| 60 |
Motif group HL_50374.1
Basepair signature:
|
0.00 | -189.99 | 4 | 3 |
|
| 61 |
Motif group HL_32617.1
Basepair signature:
|
0.00 | -194.06 | 4 | 2 |
tRNA D-loop |
| 62 |
Motif group HL_56089.1
Basepair signature:
|
0.00 | -194.42 | 5 | 4 |
|
| 63 |
Motif group HL_40469.1
Basepair signature:
|
0.00 | -195.49 | 3 | 2 |
|
| 64 |
Motif group HL_88858.1
Basepair signature:
|
0.00 | -197.92 | 6 | 5 |
|
| 65 |
Motif group HL_43610.4
Basepair signature:
|
0.00 | -197.99 | 5 | 3 |
|
| 66 |
Motif group HL_99402.3
Basepair signature:
|
0.00 | -199.43 | 7 | 6 |
Pseudoknot with intercalation |
| 67 |
Motif group HL_49196.2
Basepair signature:
|
0.00 | -199.45 | 5 | 4 |
|
| 68 |
Motif group HL_33612.1
Basepair signature:
|
0.00 | -200.54 | 6 | 5 |
|
| 69 |
Motif group HL_62869.2
Basepair signature:
|
0.00 | -202.42 | 3 | 2 |
|
| 70 |
Motif group HL_72066.1
Basepair signature:
|
0.00 | -203.24 | 6 | 5 |
|
| 71 |
Motif group HL_43613.3
Basepair signature:
|
0.00 | -204.38 | 7 | 7 |
|
| 72 |
Motif group HL_73793.2
Basepair signature:
|
0.00 | -207.59 | 6 | 5 |
T-loop related |
| 73 |
Motif group HL_75091.3
Basepair signature:
|
0.00 | -208.79 | 7 | 6 |
|
| 74 |
Motif group HL_70970.1
Basepair signature:
|
0.00 | -210.99 | 3 | 2 |
|
| 75 |
Motif group HL_34135.1
Basepair signature:
|
0.00 | -213.59 | 7 | 6 |
tRNA anticodon loop with synthetase |
| 76 |
Motif group HL_72714.2
Basepair signature:
|
0.00 | -213.83 | 8 | 7 |
|
| 77 |
Motif group HL_90642.4
Basepair signature:
|
0.00 | -217.73 | 7 | 6 |
|
| 78 |
Motif group HL_81820.1
Basepair signature:
|
0.00 | -219.04 | 8 | 7 |
|
| 79 |
Motif group HL_66171.2
Basepair signature:
|
0.00 | -219.60 | 5 | 4 |
|
| 80 |
Motif group HL_55046.1
Basepair signature:
|
0.00 | -220.83 | 6 | 4 |
|
| 81 |
Motif group HL_90961.1
Basepair signature:
|
0.00 | -222.53 | 4 | 3 |
|
| 82 |
Motif group HL_90197.1
Basepair signature:
|
0.00 | -224.72 | 5 | 3 |
|
| 83 |
Motif group HL_30819.1
Basepair signature:
|
0.00 | -229.50 | 7 | 6 |
Anticodon loop related |
| 84 |
Motif group HL_78061.2
Basepair signature:
|
0.00 | -232.15 | 7 | 6 |
T-loop with 3 stacked bulged bases |
| 85 |
Motif group HL_88225.1
Basepair signature:
|
0.00 | -234.07 | 6 | 5 |
tRNA D-loop |
| 86 |
Motif group HL_42733.3
Basepair signature:
|
0.00 | -234.42 | 5 | 5 |
GNRA with extra near cWW |
| 87 |
Motif group HL_06048.1
Basepair signature:
|
0.00 | -235.72 | 7 | 6 |
|
| 88 |
Motif group HL_68478.1
Basepair signature:
|
0.00 | -236.96 | 5 | 4 |
|
| 89 |
Motif group HL_94651.1
Basepair signature:
|
0.00 | -241.40 | 6 | 5 |
|
| 90 |
Motif group HL_19958.1
Basepair signature:
|
0.00 | -243.09 | 9 | 7 |
|
| 91 |
Motif group HL_27359.1
Basepair signature:
|
0.00 | -244.74 | 7 | 6 |
tRNA D-loop |
| 92 |
Motif group HL_55511.1
Basepair signature:
|
0.00 | -246.33 | 6 | 5 |
tRNA D-loop |
| 93 |
Motif group HL_42671.1
Basepair signature:
|
0.00 | -247.50 | 9 | 9 |
|
| 94 |
Motif group HL_49992.1
Basepair signature:
|
0.00 | -248.80 | 7 | 7 |
|
| 95 |
Motif group HL_83225.1
Basepair signature:
|
0.00 | -249.38 | 5 | 4 |
|
| 96 |
Motif group HL_17956.1
Basepair signature:
|
0.00 | -250.69 | 7 | 7 |
|
| 97 |
Motif group HL_17086.2
Basepair signature:
|
0.00 | -255.95 | 9 | 9 |
|
| 98 |
Motif group HL_12703.2
Basepair signature:
|
0.00 | -259.87 | 5 | 3 |
|
| 99 |
Motif group HL_81327.2
Basepair signature:
|
0.00 | -262.23 | 7 | 5 |
tRNA D-loop |
| 100 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -263.93 | 9 | 9 |
|
| 101 |
Motif group HL_24625.1
Basepair signature:
|
0.00 | -264.63 | 3 | 2 |
|
| 102 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -265.03 | 7 | 7 |
|
| 103 |
Motif group HL_22443.1
Basepair signature:
|
0.00 | -269.25 | 8 | 8 |
|
| 104 |
Motif group HL_79272.2
Basepair signature:
|
0.00 | -270.26 | 2 | 1 |
|
| 105 |
Motif group HL_80705.1
Basepair signature:
|
0.00 | -270.56 | 8 | 7 |
Pseudoknot |
| 106 |
Motif group HL_53189.1
Basepair signature:
|
0.00 | -273.90 | 4 | 3 |
|
| 107 |
Motif group HL_18785.1
Basepair signature:
|
0.00 | -276.50 | 4 | 2 |
|
| 108 |
Motif group HL_66703.1
Basepair signature:
|
0.00 | -276.76 | 6 | 5 |
|
| 109 |
Motif group HL_49213.1
Basepair signature:
|
0.00 | -277.42 | 7 | 6 |
|
| 110 |
Motif group HL_67216.4
Basepair signature:
|
0.00 | -278.08 | 5 | 3 |
|
| 111 |
Motif group HL_80171.1
Basepair signature:
|
0.00 | -283.94 | 5 | 3 |
|
| 112 |
Motif group HL_58446.1
Basepair signature:
|
0.00 | -284.18 | 10 | 10 |
|
| 113 |
Motif group HL_01008.4
Basepair signature:
|
0.00 | -286.81 | 3 | 2 |
|
| 114 |
Motif group HL_41285.1
Basepair signature:
|
0.00 | -289.49 | 4 | 2 |
|
| 115 |
Motif group HL_52240.1
Basepair signature:
|
0.00 | -291.30 | 4 | 2 |
|
| 116 |
Motif group HL_23481.4
Basepair signature:
|
0.00 | -292.90 | 4 | 3 |
|
| 117 |
Motif group HL_01181.4
Basepair signature:
|
0.00 | -293.39 | 6 | 5 |
|
| 118 |
Motif group HL_57204.1
Basepair signature:
|
0.00 | -305.03 | 3 | 2 |
Mini UNCG related |
| 119 |
Motif group HL_86880.4
Basepair signature:
|
0.00 | -313.99 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 120 |
Motif group HL_30541.1
Basepair signature:
|
0.00 | -314.71 | 4 | 3 |
|
| 121 |
Motif group HL_33239.14
Basepair signature:
|
0.00 | -316.04 | 5 | 5 |
T-loop with 2 stacked bulged bases |
| 122 |
Motif group HL_73266.3
Basepair signature:
|
0.00 | -316.33 | 5 | 5 |
|
| 123 |
Motif group HL_37846.1
Basepair signature:
|
0.00 | -317.60 | 9 | 8 |
Pseudoknot |
| 124 |
Motif group HL_08748.1
Basepair signature:
|
0.00 | -317.63 | 6 | 5 |
Anticodon loop related |
| 125 |
Motif group HL_58200.1
Basepair signature:
|
0.00 | -318.72 | 6 | 5 |
|
| 126 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -321.84 | 10 | 9 |
|
| 127 |
Motif group HL_56677.4
Basepair signature:
|
0.00 | -322.83 | 11 | 11 |
|
| 128 |
Motif group HL_41207.1
Basepair signature:
|
0.00 | -326.61 | 6 | 5 |
|
| 129 |
Motif group HL_14286.1
Basepair signature:
|
0.00 | -330.30 | 4 | 3 |
|
| 130 |
Motif group HL_60357.1
Basepair signature:
|
0.00 | -332.29 | 5 | 3 |
|
| 131 |
Motif group HL_86843.1
Basepair signature:
|
0.00 | -345.13 | 8 | 7 |
|
| 132 |
Motif group HL_49223.1
Basepair signature:
|
0.00 | -348.22 | 6 | 5 |
|
| 133 |
Motif group HL_76360.1
Basepair signature:
|
0.00 | -354.81 | 6 | 4 |
|
| 134 |
Motif group HL_54035.5
Basepair signature:
|
0.00 | -360.77 | 5 | 4 |
|
| 135 |
Motif group HL_19870.4
Basepair signature:
|
0.00 | -361.51 | 9 | 9 |
|
| 136 |
Motif group HL_81205.2
Basepair signature:
|
0.00 | -363.70 | 10 | 10 |
|
| 137 |
Motif group HL_68493.4
Basepair signature:
|
0.00 | -364.33 | 4 | 3 |
T-loop with 2 stacked bulged bases |
| 138 |
Motif group HL_93650.1
Basepair signature:
|
0.00 | -387.44 | 11 | 11 |
|
| 139 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -399.15 | 13 | 12 |
|
| 140 |
Motif group HL_69941.1
Basepair signature:
|
0.00 | -400.59 | 4 | 3 |
|
| 141 |
Motif group HL_46463.1
Basepair signature:
|
0.00 | -435.97 | 5 | 4 |
|
| 142 |
Motif group HL_96487.1
Basepair signature:
|
0.00 | -439.53 | 5 | 3 |
tRNA D-loop |
| 143 |
Motif group HL_30585.1
Basepair signature:
|
0.00 | -447.25 | 13 | 13 |
|
| 144 |
Motif group HL_58912.1
Basepair signature:
|
0.00 | -453.93 | 5 | 4 |
|
| 145 |
Motif group HL_44730.2
Basepair signature:
|
0.00 | -454.23 | 5 | 4 |
|
| 146 |
Motif group HL_02811.1
Basepair signature:
|
0.00 | -457.53 | 7 | 6 |
|
| 147 |
Motif group HL_06137.1
Basepair signature:
|
0.00 | -479.82 | 19 | 18 |
G-quadruplex |
| 148 |
Motif group HL_25183.1
Basepair signature:
|
0.00 | -504.02 | 6 | 5 |
|
| 149 |
Motif group HL_74088.1
Basepair signature:
|
0.00 | -519.96 | 19 | 18 |
G-quadruplex |
| 150 |
Motif group HL_46465.1
Basepair signature:
|
0.00 | -557.68 | 21 | 20 |
|
| 151 |
Motif group HL_01925.1
Basepair signature:
|
0.00 | -577.35 | 21 | 21 |
G-quadruplex |
| 152 |
Motif group HL_79564.1
Basepair signature:
|
0.00 | -614.07 | 23 | 22 |
G-quadruplex |
| 153 |
Motif group HL_41778.1
Basepair signature:
|
0.00 | -1149.96 | 8 | 6 |
|
| 154 |
Motif group HL_73051.1
Basepair signature:
|
0.00 | -1171.42 | 7 | 5 |
G-quadruplex fragment |
| 155 |
Motif group HL_23537.2
Basepair signature:
|
0.00 | -1195.88 | 7 | 6 |
T-loop with unstacked turn |
| 156 |
Motif group HL_50537.2
Basepair signature:
|
0.00 | -1201.58 | 6 | 5 |
tRNA anticodon loop with synthetase |
| 157 |
Motif group HL_10751.2
Basepair signature:
|
0.00 | -1210.55 | 8 | 7 |
tRNA D-loop |
| 158 |
Motif group HL_85984.1
Basepair signature:
|
0.00 | -1275.24 | 10 | 10 |
|
| 159 |
Motif group HL_04171.2
Basepair signature:
|
0.00 | -1286.36 | 8 | 7 |
|
| 160 |
Motif group HL_91131.1
Basepair signature:
|
0.00 | -1308.76 | 7 | 6 |
tRNA anticodon loop |
| 161 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -1312.18 | 11 | 11 |
|
| 162 |
Motif group HL_32255.1
Basepair signature:
|
0.00 | -1353.30 | 8 | 6 |
|
| 163 |
Motif group HL_67052.1
Basepair signature:
|
0.00 | -1360.04 | 5 | 5 |
|
| 164 |
Motif group HL_12710.1
Basepair signature:
|
0.00 | -1361.57 | 12 | 12 |
|
| 165 |
Motif group HL_19398.1
Basepair signature:
|
0.00 | -1378.66 | 7 | 7 |
|
| 166 |
Motif group HL_61092.1
Basepair signature:
|
0.00 | -1381.52 | 6 | 5 |
tRNA D-loop |
| 167 |
Motif group HL_05018.4
Basepair signature:
|
0.00 | -1394.85 | 5 | 5 |
|
| 168 |
Motif group HL_70682.1
Basepair signature:
|
0.00 | -1427.58 | 7 | 6 |
|
| 169 |
Motif group HL_35010.1
Basepair signature:
|
0.00 | -1431.16 | 6 | 5 |
|
| 170 |
Motif group HL_36207.1
Basepair signature:
|
0.00 | -1471.22 | 7 | 6 |
|
| 171 |
Motif group HL_59297.1
Basepair signature:
|
0.00 | -1484.63 | 6 | 5 |
|
| 172 |
Motif group HL_87219.4
Basepair signature:
|
0.00 | -1489.45 | 6 | 6 |
|
| 173 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -1491.60 | 9 | 7 |
|
| 174 |
Motif group HL_84050.1
Basepair signature:
|
0.00 | -1518.12 | 6 | 4 |
Other HL |
| 175 |
Motif group HL_02733.4
Basepair signature:
|
0.00 | -1532.44 | 5 | 4 |
|
| 176 |
Motif group HL_67044.1
Basepair signature:
|
0.00 | -1572.70 | 8 | 7 |
|
| 177 |
Motif group HL_23090.1
Basepair signature:
|
0.00 | -1689.66 | 6 | 5 |
|
| 178 |
Motif group HL_93573.1
Basepair signature:
|
0.00 | -1750.37 | 6 | 5 |
|
| 179 |
Motif group HL_23219.1
Basepair signature:
|
0.00 | -1764.68 | 5 | 4 |
|
| 180 |
Motif group HL_49816.1
Basepair signature:
|
0.00 | -1781.61 | 5 | 4 |
|
| 181 |
Motif group HL_30937.1
Basepair signature:
|
0.00 | -2016.21 | 5 | 3 |
|
| 182 |
Motif group HL_50959.1
Basepair signature:
|
0.00 | -2034.02 | 5 | 3 |
|
| 183 |
Motif group HL_29487.1
Basepair signature:
|
0.00 | -2058.64 | 4 | 3 |
Mini UNCG |
| 184 |
Motif group HL_93727.3
Basepair signature:
|
0.00 | -2104.71 | 4 | 4 |
GNRA with tandem sheared |
| 185 |
Motif group HL_69677.1
Basepair signature:
|
0.00 | -2157.07 | 6 | 5 |
|
| 186 |
Motif group HL_62604.1
Basepair signature:
|
0.00 | -2173.08 | 3 | 2 |
|
| 187 |
Motif group HL_28567.3
Basepair signature:
|
0.00 | -2175.07 | 3 | 2 |
|
| 188 |
Motif group HL_14859.1
Basepair signature:
|
0.00 | -2180.24 | 3 | 2 |
|
| 189 |
Motif group HL_98995.6
Basepair signature:
|
0.00 | -2192.48 | 3 | 2 |
Ribsomal LSU H95 |
| 190 |
Motif group HL_94386.1
Basepair signature:
|
0.00 | -2194.27 | 4 | 3 |
|
| 191 |
Motif group HL_67205.1
Basepair signature:
|
0.00 | -2211.63 | 4 | 3 |
|
| 192 |
Motif group HL_82678.2
Basepair signature:
|
0.00 | -2231.48 | 4 | 3 |
|
| 193 |
Motif group HL_51033.1
Basepair signature:
|
0.00 | -2240.21 | 5 | 4 |
|
| 194 |
Motif group HL_24403.1
Basepair signature:
|
0.00 | -2251.29 | 4 | 3 |
|
| 195 |
Motif group HL_07579.1
Basepair signature:
|
0.00 | -4065.13 | 13 | 12 |
|
| 196 |
Motif group HL_82866.1
Basepair signature:
|
0.00 | -4107.35 | 13 | 13 |
|
| 197 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4118.19 | 17 | 16 |
|
| 198 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -4132.39 | 13 | 12 |
|
| 199 |
Motif group HL_52657.1
Basepair signature:
|
0.00 | -4146.18 | 13 | 13 |
|
| 200 |
Motif group HL_82782.1
Basepair signature:
|
0.00 | -4159.05 | 15 | 15 |
|
| 201 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4159.28 | 17 | 16 |
|
| 202 |
Motif group HL_35978.6
Basepair signature:
|
0.00 | -4487.50 | 9 | 8 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 203 |
Motif group HL_38011.1
Basepair signature:
|
0.00 | -4608.06 | 10 | 10 |
|
| 204 |
Motif group HL_20751.1
Basepair signature:
|
0.00 | -4746.40 | 10 | 10 |
|
| 205 |
Motif group HL_89082.1
Basepair signature:
|
0.00 | -4809.88 | 10 | 9 |
|
| 206 |
Motif group HL_31581.4
Basepair signature:
|
0.00 | -4914.77 | 9 | 8 |
|
| 207 |
Motif group HL_12773.1
Basepair signature:
|
0.00 | -4947.26 | 12 | 11 |
|
| 208 |
Motif group HL_98885.3
Basepair signature:
|
0.00 | -5010.07 | 8 | 7 |
Pseudoknot geometry |
| 209 |
Motif group HL_98248.1
Basepair signature:
|
0.00 | -5015.93 | 8 | 7 |
|
| 210 |
Motif group HL_93221.1
Basepair signature:
|
0.00 | -5025.29 | 10 | 10 |
|
| 211 |
Motif group HL_42211.1
Basepair signature:
|
0.00 | -5031.45 | 12 | 11 |
|
| 212 |
Motif group HL_03603.1
Basepair signature:
|
0.00 | -5055.61 | 14 | 13 |
Pseudoknot geometry |
| 213 |
Motif group HL_72419.1
Basepair signature:
|
0.00 | -5085.71 | 8 | 7 |
|
| 214 |
Motif group HL_31286.3
Basepair signature:
|
0.00 | -5091.81 | 7 | 6 |
|
| 215 |
Motif group HL_43488.1
Basepair signature:
|
0.00 | -5096.62 | 10 | 9 |
|
| 216 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -5097.49 | 8 | 8 |
|
| 217 |
Motif group HL_70505.1
Basepair signature:
|
0.00 | -5123.84 | 9 | 8 |
|
| 218 |
Motif group HL_90257.1
Basepair signature:
|
0.00 | -5127.74 | 14 | 14 |
Pseudoknot geometry with G-bulge |
| 219 |
Motif group HL_67265.4
Basepair signature:
|
0.00 | -5129.79 | 8 | 7 |
|
| 220 |
Motif group HL_07432.1
Basepair signature:
|
0.00 | -5145.03 | 10 | 10 |
|
| 221 |
Motif group HL_20714.1
Basepair signature:
|
0.00 | -5148.35 | 10 | 9 |
|
| 222 |
Motif group HL_12571.1
Basepair signature:
|
0.00 | -5205.05 | 11 | 11 |
tRNA D-loop |
| 223 |
Motif group HL_30596.1
Basepair signature:
|
0.00 | -5265.55 | 8 | 8 |
|
| 224 |
Motif group HL_08291.1
Basepair signature:
|
0.00 | -5324.19 | 9 | 8 |
|
| 225 |
Motif group HL_22576.1
Basepair signature:
|
0.00 | -5331.82 | 9 | 8 |
|
| 226 |
Motif group HL_91503.2
Basepair signature:
|
0.00 | -5334.20 | 7 | 7 |
|
| 227 |
Motif group HL_15968.1
Basepair signature:
|
0.00 | -5349.26 | 7 | 6 |
|
| 228 |
Motif group HL_38513.1
Basepair signature:
|
0.00 | -5387.93 | 6 | 6 |
Pseudoknot geometry |
| 229 |
Motif group HL_35188.1
Basepair signature:
|
0.00 | -5389.46 | 8 | 7 |
tRNA D-loop |
| 230 |
Motif group HL_25466.1
Basepair signature:
|
0.00 | -5407.60 | 9 | 8 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 231 |
Motif group HL_41851.1
Basepair signature:
|
0.00 | -5421.89 | 6 | 5 |
|
| 232 |
Motif group HL_11805.2
Basepair signature:
|
0.00 | -5461.75 | 7 | 7 |
|
| 233 |
Motif group HL_96423.1
Basepair signature:
|
0.00 | -5485.10 | 9 | 8 |
|
| 234 |
Motif group HL_32458.2
Basepair signature:
|
0.00 | -5519.75 | 7 | 7 |
|
| 235 |
Motif group HL_58733.1
Basepair signature:
|
0.00 | -5528.60 | 11 | 10 |
|
| 236 |
Motif group HL_20891.1
Basepair signature:
|
0.00 | -5553.22 | 7 | 7 |
|
| 237 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -5565.25 | 10 | 9 |
|
| 238 |
Motif group HL_03847.1
Basepair signature:
|
0.00 | -5565.91 | 9 | 8 |
|
| 239 |
Motif group HL_14725.1
Basepair signature:
|
0.00 | -5621.12 | 7 | 6 |
|
| 240 |
Motif group HL_03427.1
Basepair signature:
|
0.00 | -5624.00 | 6 | 5 |
|
| 241 |
Motif group HL_19162.2
Basepair signature:
|
0.00 | -5624.66 | 8 | 8 |
|
| 242 |
Motif group HL_36095.1
Basepair signature:
|
0.00 | -5635.66 | 8 | 7 |
|
| 243 |
Motif group HL_10536.1
Basepair signature:
|
0.00 | -5681.28 | 8 | 6 |
|
| 244 |
Motif group HL_60326.1
Basepair signature:
|
0.00 | -5681.93 | 9 | 9 |
|
| 245 |
Motif group HL_49873.1
Basepair signature:
|
0.00 | -5724.10 | 9 | 9 |
tRNA D-loop |
| 246 |
Motif group HL_94032.1
Basepair signature:
|
0.00 | -5761.25 | 11 | 9 |
|
| 247 |
Motif group HL_24323.1
Basepair signature:
|
0.00 | -5765.73 | 6 | 6 |
|
| 248 |
Motif group HL_50622.6
Basepair signature:
|
0.00 | -5774.58 | 8 | 7 |
|
| 249 |
Motif group HL_19239.1
Basepair signature:
|
0.00 | -5778.20 | 8 | 7 |
tRNA D-loop |
| 250 |
Motif group HL_33172.1
Basepair signature:
|
0.00 | -5789.62 | 7 | 6 |
|
| 251 |
Motif group HL_73235.1
Basepair signature:
|
0.00 | -5912.25 | 7 | 6 |
|
| 252 |
Motif group HL_36421.4
Basepair signature:
|
0.00 | -5955.58 | 5 | 5 |
|
| 253 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -6083.42 | 8 | 7 |
|
| 254 |
Motif group HL_07268.1
Basepair signature:
|
0.00 | -6087.66 | 8 | 8 |
|
| 255 |
Motif group HL_28843.1
Basepair signature:
|
0.00 | -6096.25 | 11 | 11 |
Pseudoknot geometry with G-bulge |
| 256 |
Motif group HL_09712.1
Basepair signature:
|
0.00 | -6102.40 | 7 | 6 |
|
| 257 |
Motif group HL_68863.1
Basepair signature:
|
0.00 | -6114.78 | 11 | 10 |
|
| 258 |
Motif group HL_53037.1
Basepair signature:
|
0.00 | -6124.90 | 8 | 7 |
Pseudoknot |
| 259 |
Motif group HL_26501.1
Basepair signature:
|
0.00 | -6130.39 | 7 | 6 |
|
| 260 |
Motif group HL_51090.1
Basepair signature:
|
0.00 | -6157.05 | 8 | 7 |
tRNA D-loop |
| 261 |
Motif group HL_96854.1
Basepair signature:
|
0.00 | -6234.55 | 6 | 6 |
|
| 262 |
Motif group HL_52853.1
Basepair signature:
|
0.00 | -6277.33 | 8 | 7 |
tRNA D-loop |
| 263 |
Motif group HL_88982.1
Basepair signature:
|
0.00 | -6290.14 | 8 | 8 |
|
| 264 |
Motif group HL_48810.1
Basepair signature:
|
0.00 | -6300.34 | 7 | 5 |
tRNA D-loop |
| 265 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -6302.84 | 8 | 7 |
|
| 266 |
Motif group HL_68742.1
Basepair signature:
|
0.00 | -6322.15 | 6 | 5 |
tRNA anticodon loop |
| 267 |
Motif group HL_26772.1
Basepair signature:
|
0.00 | -6327.35 | 8 | 7 |
|
| 268 |
Motif group HL_05123.1
Basepair signature:
|
0.00 | -6389.29 | 8 | 7 |
|
| 269 |
Motif group HL_51284.1
Basepair signature:
|
0.00 | -6412.05 | 6 | 6 |
|
| 270 |
Motif group HL_36552.1
Basepair signature:
|
0.00 | -6446.60 | 7 | 5 |
|
| 271 |
Motif group HL_53499.1
Basepair signature:
|
0.00 | -6522.00 | 7 | 6 |
|
| 272 |
Motif group HL_97049.1
Basepair signature:
|
0.00 | -6532.50 | 7 | 6 |
|
| 273 |
Motif group HL_94607.1
Basepair signature:
|
0.00 | -6550.13 | 7 | 7 |
|
| 274 |
Motif group HL_56500.1
Basepair signature:
|
0.00 | -6564.00 | 9 | 7 |
|
| 275 |
Motif group HL_39334.4
Basepair signature:
|
0.00 | -6727.56 | 6 | 6 |
|
| 276 |
Motif group HL_93436.1
Basepair signature:
|
0.00 | -6730.62 | 7 | 6 |
T-loop with 2 stacked bulged bases |
| 277 |
Motif group HL_59710.7
Basepair signature:
|
0.00 | -6749.80 | 5 | 5 |
tRNA anticodon loop |
| 278 |
Motif group HL_78724.1
Basepair signature:
|
0.00 | -6793.65 | 6 | 5 |
|
| 279 |
Motif group HL_28085.1
Basepair signature:
|
0.00 | -6840.90 | 5 | 5 |
Other HL |
| 280 |
Motif group HL_86378.1
Basepair signature:
|
0.00 | -6851.13 | 8 | 7 |
|
| 281 |
Motif group HL_48962.1
Basepair signature:
|
0.00 | -6920.39 | 8 | 7 |
|
| 282 |
Motif group HL_48376.3
Basepair signature:
|
0.00 | -6948.53 | 6 | 6 |
|
| 283 |
Motif group HL_48636.1
Basepair signature:
|
0.00 | -6952.57 | 7 | 5 |
|
| 284 |
Motif group HL_83704.1
Basepair signature:
|
0.00 | -7272.35 | 7 | 6 |
|
| 285 |
Motif group HL_44769.1
Basepair signature:
|
0.00 | -7356.20 | 6 | 5 |
Pseudoknot geometry |
| 286 |
Motif group HL_49194.1
Basepair signature:
|
0.00 | -7393.57 | 6 | 4 |
|
| 287 |
Motif group HL_38646.2
Basepair signature:
|
0.00 | -7444.82 | 5 | 4 |
T-loop related |
| 288 |
Motif group HL_93551.1
Basepair signature:
|
0.00 | -7446.67 | 5 | 4 |
|
| 289 |
Motif group HL_80105.3
Basepair signature:
|
0.00 | -7848.44 | 6 | 5 |
|
| 290 |
Motif group HL_46771.1
Basepair signature:
|
0.00 | -7914.51 | 6 | 5 |
|
| 291 |
Motif group HL_01187.1
Basepair signature:
|
0.00 | -8070.07 | 5 | 4 |
|
| 292 |
Motif group HL_35888.1
Basepair signature:
|
0.00 | -8075.38 | 5 | 4 |
|
| 293 |
Motif group HL_44911.1
Basepair signature:
|
0.00 | -8075.86 | 5 | 4 |
|
| 294 |
Motif group HL_63693.1
Basepair signature:
|
0.00 | -8127.24 | 6 | 6 |
Pseudoknot geometry |
| 295 |
Motif group HL_46891.2
Basepair signature:
|
0.00 | -8481.16 | 5 | 4 |
|
| 296 |
Motif group HL_06920.1
Basepair signature:
|
0.00 | -8483.95 | 5 | 5 |
Pseudoknot geometry |
| 297 |
Motif group HL_92681.4
Basepair signature:
|
0.00 | -8504.33 | 4 | 4 |
GNRA variation |
| 298 |
Motif group HL_05692.1
Basepair signature:
|
0.00 | -8671.49 | 4 | 3 |
|
| 299 |
Motif group HL_96283.1
Basepair signature:
|
0.00 | -8688.91 | 4 | 3 |
Mini UNCG with extended bulge |
| 300 |
Motif group HL_17926.4
Basepair signature:
|
0.00 | -8815.62 | 5 | 5 |
|
| 301 |
Motif group HL_35491.2
Basepair signature:
|
0.00 | -8883.73 | 4 | 3 |
|
| 302 |
Motif group HL_72451.4
Basepair signature:
|
0.00 | -9147.10 | 5 | 4 |
|
| 303 |
Motif group HL_27757.1
Basepair signature:
|
0.00 | -9261.28 | 5 | 4 |
|
| 304 |
Motif group HL_32512.6
Basepair signature:
|
0.00 | -9417.59 | 5 | 4 |
Pseudoknot geometry |
| 305 |
Motif group HL_26055.5
Basepair signature:
|
0.00 | -9689.87 | 4 | 3 |
Purine riboswitch |
| 306 |
Motif group HL_59445.1
Basepair signature:
|
0.00 | -9691.84 | 4 | 3 |
|
| 307 |
Motif group HL_18808.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
tRNA D-loop |
| 308 |
Motif group HL_27747.3
Basepair signature:
|
0.00 | -9999.00 | 4 | 3 |
|
| 309 |
Motif group HL_46142.7
Basepair signature:
|
0.00 | -9999.00 | 4 | 4 |
Pseudoknot geometry |
| 310 |
Motif group HL_69459.1
Basepair signature:
|
0.00 | -9999.00 | 5 | 4 |
|