5AA0 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5AA0_001 | 1/AA/60:67 | No text annotation Not in a motif group | ||
| HL_5AA0_002 | 1/AA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5AA0_003 | 1/AA/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_5AA0_004 | 1/AA/137A:141A | No text annotation Not in a motif group | ||
| HL_5AA0_005 | 1/AA/152:174 | No text annotation Not in a motif group | ||
| HL_5AA0_006 | 1/AA/194:201 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_75407.1 | |
| HL_5AA0_007 | 1/AA/225:230 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
| HL_5AA0_008 | 1/AA/245:253 | No text annotation Not in a motif group | geometric HL_2ZZN_004 HL_09136.1 | |
| HL_5AA0_009 | 1/AA/270J:270P | No text annotation Not in a motif group | ||
| HL_5AA0_010 | 1/AA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_5AA0_011 | 1/AA/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_75407.1 | |
| HL_5AA0_012 | 1/AA/327:335 | No text annotation Not in a motif group | geometric HL_4WF9_012 HL_08002.8 | |
| HL_5AA0_013 | 1/AA/383:391 | No text annotation Not in a motif group | ||
| HL_5AA0_014 | 1/AA/411:416 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5AA0_015 | 1/AA/462:467 | GNRA Not in a motif group | homologous HL_5J7L_147 HL_42097.1 | |
| HL_5AA0_016 | 1/AA/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_5AA0_017 | 1/AA/544:549 | No text annotation Not in a motif group | ||
| HL_5AA0_018 | 1/AA/564:577 | No text annotation Not in a motif group | ||
| HL_5AA0_019 | 1/AA/605:623 | No text annotation Not in a motif group | ||
| HL_5AA0_020 | 1/AA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_5AA0_021 | 1/AA/638:650 | No text annotation Not in a motif group | ||
| HL_5AA0_022 | 1/AA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5AA0_023 | 1/AA/744:753 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.6 | |
| HL_5AA0_024 | 1/AA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_5AA0_025 | 1/AA/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_5AA0_026 | 1/AA/873:904 | No text annotation Not in a motif group | ||
| HL_5AA0_027 | 1/AA/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_5AA0_028 | 1/AA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5AA0_029 | 1/AA/1092:1099 | No text annotation Not in a motif group | ||
| HL_5AA0_030 | 1/AA/1170:1179 | No text annotation Not in a motif group | ||
| HL_5AA0_031 | 1/AA/1221:1228 | No text annotation Not in a motif group | ||
| HL_5AA0_032 | 1/AA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5AA0_033 | 1/AA/1324:1330 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_5AA0_034 | 1/AA/1362:1369 | No text annotation Not in a motif group | ||
| HL_5AA0_035 | 1/AA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_5AA0_036 | 1/AA/1450:1461 | No text annotation Not in a motif group | ||
| HL_5AA0_037 | 1/AA/1492:1498 | No text annotation Not in a motif group | ||
| HL_5AA0_038 | 1/AA/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_5AA0_039 | 1/AA/1612:1619 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_5AA0_040 | 1/AA/1630:1636 | No text annotation Not in a motif group | homologous HL_7A0S_041 HL_26881.1 | |
| HL_5AA0_041 | 1/AA/1691:1696 | UNCG Not in a motif group | geometric HL_4U7U_001 HL_32369.1 | |
| HL_5AA0_042 | 1/AA/1717:1742 | No text annotation Not in a motif group | ||
| HL_5AA0_043 | 1/AA/1752:1756 | No text annotation Not in a motif group | homologous HL_7A0S_044 HL_76539.2 | |
| HL_5AA0_044 | 1/AA/1779:1785 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5AA0_045 | 1/AA/1806:1811 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_5AA0_046 | 1/AA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_5AA0_047 | 1/AA/1909:1922 | No text annotation Not in a motif group | ||
| HL_5AA0_048 | 1/AA/1950:1956 | No text annotation Not in a motif group | geometric HL_5T16_002 HL_65572.2 | |
| HL_5AA0_049 | 1/AA/2027:2036 | No text annotation Not in a motif group | homologous HL_7A0S_049 HL_90642.6 | |
| HL_5AA0_050 | 1/AA/2143:2148 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5AA0_051 | 1/AA/2209:2215 | No text annotation Not in a motif group | ||
| HL_5AA0_052 | 1/AA/2249:2255 | No text annotation Not in a motif group | ||
| HL_5AA0_053 | 1/AA/2264:2276 | No text annotation Not in a motif group | homologous HL_7A0S_053 HL_19870.6 | |
| HL_5AA0_054 | 1/AA/2304:2312 | No text annotation Not in a motif group | ||
| HL_5AA0_055 | 1/AA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5AA0_056 | 1/AA/2355:2362 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_5AA0_057 | 1/AA/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_5AA0_058 | 1/AA/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_5AA0_059 | 1/AA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_5AA0_060 | 1/AA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_5AA0_061 | 1/AA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5AA0_062 | 1/AA/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_5AA0_063 | 1/AA/2648:2672 | No text annotation Not in a motif group | ||
| HL_5AA0_064 | 1/AA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5AA0_065 | 1/AA/2746:2758 | No text annotation Not in a motif group | ||
| HL_5AA0_066 | 1/AA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_5AA0_067 | 1/AA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5AA0_068 | 1/AB/38:44 | No text annotation Not in a motif group | ||
| HL_5AA0_069 | 1/AB/86:90 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 | |
| HL_5AA0_070 | 1/BA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5AA0_071 | 1/BA/81:88 | No text annotation Not in a motif group | ||
| HL_5AA0_072 | 1/BA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_5AA0_073 | 1/BA/186F:191A | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
| HL_5AA0_074 | 1/BA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_5AA0_075 | 1/BA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5AA0_076 | 1/BA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_5AA0_077 | 1/BA/320:333 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
| HL_5AA0_078 | 1/BA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_5AA0_079 | 1/BA/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_5AA0_080 | 1/BA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_5AA0_081 | 1/BA/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_5AA0_082 | 1/BA/522:527 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5AA0_083 | 1/BA/617:623 | No text annotation Not in a motif group | homologous HL_6CZR_085 HL_26881.1 | |
| HL_5AA0_084 | 1/BA/689:698 | No text annotation Not in a motif group | ||
| HL_5AA0_085 | 1/BA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_5AA0_086 | 1/BA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_5AA0_087 | 1/BA/838:848 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_38927.2 | |
| HL_5AA0_088 | 1/BA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_5AA0_089 | 1/BA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5AA0_090 | 1/BA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5AA0_091 | 1/BA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5AA0_092 | 1/BA/1028B:1032A | No text annotation Not in a motif group | homologous HL_4LFB_023 NA | |
| HL_5AA0_093 | 1/BA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_5AA0_094 | 1/BA/1089:1096 | No text annotation Not in a motif group | homologous HL_6CZR_096 HL_71554.2 | |
| HL_5AA0_095 | 1/BA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_5AA0_096 | 1/BA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_5AA0_097 | 1/BA/1265:1270 | No text annotation Not in a motif group | ||
| HL_5AA0_098 | 1/BA/1314:1323 | No text annotation Not in a motif group | geometric HL_4LFB_029 HL_89380.2 | |
| HL_5AA0_099 | 1/BA/1356:1366 | No text annotation Not in a motif group | homologous HL_6CZR_101 HL_96366.1 | |
| HL_5AA0_100 | 1/BA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_5AA0_101 | 1/BA/1515:1520 | No text annotation Not in a motif group | homologous HL_5J7L_031 NA | |
| HL_5AA0_102 | 1/BC/13:22 | No text annotation Not in a motif group | geometric HL_6JXM_001 HL_25462.2 | |
| HL_5AA0_103 | 1/BC/30:40 | No text annotation Not in a motif group | geometric HL_4V7M_039 HL_36684.1 | |
| HL_5AA0_104 | 1/BC/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6PMO_005 HL_22280.1 | |
| HL_5AA0_105 | 1/BD/13:22 | No text annotation Not in a motif group | ||
| HL_5AA0_106 | 1/BD/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4V9I_039 HL_53597.2 | |
| HL_5AA0_107 | 1/BD/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_3WFS_003 HL_71309.1 | |
| HL_5AA0_108 | 1/BE/13:22 | No text annotation Not in a motif group | ||
| HL_5AA0_109 | 1/BE/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_6UFG_007 HL_53597.2 | |
| HL_5AA0_110 | 1/BE/53:61 | No text annotation Not in a motif group | homologous HL_6UGG_006 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5AA0_001 | 1/AA/25:30, 1/AA/510:515 | No text annotation Not in a motif group | ||
| IL_5AA0_002 | 1/AA/36:37, 1/AA/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_5AA0_003 | 1/AA/43:44, 1/AA/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_5AA0_004 | 1/AA/81:85, 1/AA/97:105 | Kink-turn Not in a motif group | homologous IL_7A0S_004 IL_45067.2 | |
| IL_5AA0_005 | 1/AA/183:184, 1/AA/212:215 | No text annotation Not in a motif group | ||
| IL_5AA0_006 | 1/AA/188:194, 1/AA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_5AA0_007 | 1/AA/239:245, 1/AA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5AA0_008 | 1/AA/271:272, 1/AA/365:366 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_002 IL_59677.2 | |
| IL_5AA0_009 | 1/AA/273:273A, 1/AA/363E:364 | No text annotation Not in a motif group | ||
| IL_5AA0_010 | 1/AA/273A:273C, 1/AA/363C:363E | UU cWW Not in a motif group | geometric IL_4E48_006 IL_95997.1 | |
| IL_5AA0_012 | 1/AA/288:292, 1/AA/348:353 | No text annotation Not in a motif group | ||
| IL_5AA0_013 | 1/AA/292:295, 1/AA/343:348 | No text annotation Not in a motif group | ||
| IL_5AA0_015 | 1/AA/672:674, 1/AA/806:808 | No text annotation Not in a motif group | ||
| IL_5AA0_016 | 1/AA/674:678, 1/AA/799:806 | No text annotation Not in a motif group | ||
| IL_5AA0_017 | 1/AA/697:698, 1/AA/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.2 | |
| IL_5AA0_018 | 1/AA/703:707, 1/AA/724:729 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_5AA0_019 | 1/AA/738:741, 1/AA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5AA0_020 | 1/AA/837:838, 1/AA/940:942 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_5AA0_021 | 1/AA/844:846, 1/AA/932:934 | No text annotation Not in a motif group | ||
| IL_5AA0_022 | 1/AA/846:850, 1/AA/928:932 | No text annotation Not in a motif group | ||
| IL_5AA0_023 | 1/AA/858:860, 1/AA/917:919 | No text annotation Not in a motif group | ||
| IL_5AA0_024 | 1/AA/860:862, 1/AA/915:917 | No text annotation Not in a motif group | ||
| IL_5AA0_025 | 1/AA/862:863, 1/AA/913:915 | Minor groove platform Not in a motif group | geometric IL_7TZS_003 IL_42622.2 | |
| IL_5AA0_026 | 1/AA/864:868, 1/AA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5AA0_027 | 1/AA/870:872, 1/AA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_5AA0_028 | 1/AA/952:954, 1/AA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_5AA0_029 | 1/AA/994:996, 1/AA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_5AA0_030 | 1/AA/998:1002, 1/AA/1153:1157 | No text annotation Not in a motif group | ||
| IL_5AA0_031 | 1/AA/1004:1011, 1/AA/1150:1151 | No text annotation Not in a motif group | geometric IL_4V88_416 IL_69996.1 | |
| IL_5AA0_032 | 1/AA/1011:1013, 1/AA/1149:1150 | Single bulged U Not in a motif group | homologous IL_7A0S_035 IL_83039.13 | |
| IL_5AA0_033 | 1/AA/1019:1030, 1/AA/1124:1143 | No text annotation Not in a motif group | ||
| IL_5AA0_034 | 1/AA/1031:1034, 1/AA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
| IL_5AA0_035 | 1/AA/1055:1087, 1/AA/1102:1104 | No text annotation Not in a motif group | ||
| IL_5AA0_036 | 1/AA/1087:1091, 1/AA/1100:1102 | No text annotation Not in a motif group | ||
| IL_5AA0_037 | 1/AA/1165:1167, 1/AA/1182:1184 | No text annotation Not in a motif group | homologous IL_4WF9_043 NA | |
| IL_5AA0_038 | 1/AA/1197:1198, 1/AA/1247:1249 | Single bulged G Not in a motif group | geometric IL_5J7L_001 IL_00225.2 | |
| IL_5AA0_039 | 1/AA/1202:1207, 1/AA/1239:1243 | No text annotation Not in a motif group | ||
| IL_5AA0_040 | 1/AA/1208:1215, 1/AA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5AA0_041 | 1/AA/1219:1221, 1/AA/1228:1230 | Intercalated cWW Not in a motif group | geometric IL_7A0S_044 IL_82842.2 | |
| IL_5AA0_042 | 1/AA/1319:1324, 1/AA/1330:1333 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_5AA0_043 | 1/AA/1351:1355, 1/AA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5AA0_044 | 1/AA/1357:1361, 1/AA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7A0S_049 IL_17136.1 | |
| IL_5AA0_045 | 1/AA/1415:1421, 1/AA/1577:1587 | No text annotation Not in a motif group | ||
| IL_5AA0_046 | 1/AA/1421:1423, 1/AA/1575:1577 | No text annotation Not in a motif group | homologous IL_4WF9_055 IL_95997.1 | |
| IL_5AA0_047 | 1/AA/1432:1435, 1/AA/1557:1561 | No text annotation Not in a motif group | ||
| IL_5AA0_048 | 1/AA/1437:1440, 1/AA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7A0S_053 IL_04059.1 | |
| IL_5AA0_049 | 1/AA/1448:1449A, 1/AA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_5AA0_050 | 1/AA/1474:1478, 1/AA/1515:1517 | No text annotation Not in a motif group | ||
| IL_5AA0_051 | 1/AA/1478:1482, 1/AA/1507:1515 | No text annotation Not in a motif group | ||
| IL_5AA0_052 | 1/AA/1488:1491, 1/AA/1499:1501 | No text annotation Not in a motif group | ||
| IL_5AA0_053 | 1/AA/1525:1531, 1/AA/1540:1546 | No text annotation Not in a motif group | ||
| IL_5AA0_055 | 1/AA/1651:1656, 1/AA/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_5AA0_056 | 1/AA/1663:1665, 1/AA/1995:1997 | No text annotation Not in a motif group | ||
| IL_5AA0_057 | 1/AA/1686:1691, 1/AA/1696:1702 | No text annotation Not in a motif group | ||
| IL_5AA0_058 | 1/AA/1712:1717, 1/AA/1742:1746 | No text annotation Not in a motif group | ||
| IL_5AA0_059 | 1/AA/1770:1771, 1/AA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.2 | |
| IL_5AA0_061 | 1/AA/1798:1804, 1/AA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_4WF9_069 IL_17069.3 | |
| IL_5AA0_062 | 1/AA/1836:1840, 1/AA/1902:1904 | No text annotation Not in a motif group | ||
| IL_5AA0_063 | 1/AA/1841:1842, 1/AA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_69996.1 | |
| IL_5AA0_064 | 1/AA/1846:1849, 1/AA/1893:1894 | No text annotation Not in a motif group | homologous IL_4WF9_072 NA | |
| IL_5AA0_065 | 1/AA/1851:1855, 1/AA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7A0S_069 IL_90318.1 | |
| IL_5AA0_066 | 1/AA/1856:1860, 1/AA/1882:1886 | Triple sheared Not in a motif group | homologous IL_4WF9_074 IL_96141.1 | |
| IL_5AA0_067 | 1/AA/1934:1945, 1/AA/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_5AA0_068 | 1/AA/2050:2052, 1/AA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7A0S_073 IL_27635.1 | |
| IL_5AA0_069 | 1/AA/2054:2056, 1/AA/2612:2615 | No text annotation Not in a motif group | ||
| IL_5AA0_070 | 1/AA/2067:2069, 1/AA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_5AA0_071 | 1/AA/2070:2071, 1/AA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_5AA0_072 | 1/AA/2081:2083, 1/AA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5AA0_073 | 1/AA/2085:2087, 1/AA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5AA0_074 | 1/AA/2108:2110, 1/AA/2179:2181 | No text annotation Not in a motif group | geometric IL_4KZD_003 IL_95997.1 | |
| IL_5AA0_075 | 1/AA/2110:2120, 1/AA/2178:2179 | No text annotation Not in a motif group | homologous IL_3U4M_002 IL_45944.3 | |
| IL_5AA0_076 | 1/AA/2124:2127, 1/AA/2161:2174 | No text annotation Not in a motif group | ||
| IL_5AA0_077 | 1/AA/2130:2136, 1/AA/2155:2158 | No text annotation Not in a motif group | ||
| IL_5AA0_078 | 1/AA/2297:2299, 1/AA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_5AA0_079 | 1/AA/2350:2353, 1/AA/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
| IL_5AA0_080 | 1/AA/2401:2403, 1/AA/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_5AA0_081 | 1/AA/2454:2455, 1/AA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_5AA0_082 | 1/AA/2457:2460, 1/AA/2490:2494 | No text annotation Not in a motif group | ||
| IL_5AA0_083 | 1/AA/2466:2470, 1/AA/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_5AA0_084 | 1/AA/2507:2508, 1/AA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_5AA0_085 | 1/AA/2510:2512, 1/AA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_087 IL_90933.2 | |
| IL_5AA0_086 | 1/AA/2512:2513, 1/AA/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_5AA0_087 | 1/AA/2521:2522, 1/AA/2541:2544 | No text annotation Not in a motif group | ||
| IL_5AA0_088 | 1/AA/2591:2592, 1/AA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5AA0_089 | 1/AA/2637:2640, 1/AA/2774:2781 | No text annotation Not in a motif group | ||
| IL_5AA0_090 | 1/AA/2646:2648, 1/AA/2672:2674 | CA cWW Not in a motif group | geometric IL_5ED2_004 IL_95997.1 | |
| IL_5AA0_091 | 1/AA/2680:2684, 1/AA/2725:2727 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_5AA0_092 | 1/AA/2686:2691, 1/AA/2718:2723 | No text annotation Not in a motif group | ||
| IL_5AA0_093 | 1/AA/2695:2696, 1/AA/2711:2714 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_097 IL_71530.2 | |
| IL_5AA0_094 | 1/AA/2696:2698, 1/AA/2709:2711 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_5AA0_095 | 1/AA/2737:2742, 1/AA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_5AA0_096 | 1/AA/2838:2839, 1/AA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5AA0_097 | 1/AA/2843:2845, 1/AA/2871:2874 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_5AA0_098 | 1/AA/2846:2852, 1/AA/2865:2870 | No text annotation Not in a motif group | ||
| IL_5AA0_099 | 1/AB/8:10, 1/AB/110:112 | No text annotation Not in a motif group | geometric IL_4V88_424 IL_95997.1 | |
| IL_5AA0_100 | 1/AB/17:18, 1/AB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_5AA0_101 | 1/AB/22:29, 1/AB/55:61 | No text annotation Not in a motif group | homologous IL_4WF9_113 IL_19048.1 | |
| IL_5AA0_102 | 1/AB/30:31, 1/AB/51:54 | No text annotation Not in a motif group | ||
| IL_5AA0_103 | 1/AB/34:38, 1/AB/44:48 | No text annotation Not in a motif group | ||
| IL_5AA0_104 | 1/AB/71:79, 1/AB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_5AA0_105 | 1/BA/30:32, 1/BA/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
| IL_5AA0_106 | 1/BA/44:46, 1/BA/395:398 | No text annotation Not in a motif group | ||
| IL_5AA0_107 | 1/BA/47:52, 1/BA/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_5AA0_108 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5AA0_109 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_5AA0_110 | 1/BA/67:69, 1/BA/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_5AA0_111 | 1/BA/129:131, 1/BA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_5AA0_112 | 1/BA/132:136, 1/BA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5AA0_113 | 1/BA/148:153, 1/BA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_5AA0_114 | 1/BA/185:186B, 1/BA/191E:192 | No text annotation Not in a motif group | ||
| IL_5AA0_115 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_5AA0_116 | 1/BA/249:252, 1/BA/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_5AA0_117 | 1/BA/292:293, 1/BA/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_5AA0_118 | 1/BA/367:369, 1/BA/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_5AA0_119 | 1/BA/371:375, 1/BA/389:390 | No text annotation Not in a motif group | ||
| IL_5AA0_120 | 1/BA/375:376, 1/BA/387:389 | Single bulged G Not in a motif group | homologous IL_4LFB_016 IL_00225.2 | |
| IL_5AA0_121 | 1/BA/409:416, 1/BA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5AA0_122 | 1/BA/446:450, 1/BA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_6CZR_130 IL_88269.3 | |
| IL_5AA0_123 | 1/BA/450:455, 1/BA/477:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_5AA0_124 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5AA0_125 | 1/BA/515:521, 1/BA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_5AA0_126 | 1/BA/579:584, 1/BA/757:762 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
| IL_5AA0_127 | 1/BA/594:596, 1/BA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5AA0_128 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_5AA0_129 | 1/BA/605:612, 1/BA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5AA0_130 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
| IL_5AA0_131 | 1/BA/657:658, 1/BA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_5AA0_132 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5AA0_133 | 1/BA/673:677, 1/BA/713:717 | No text annotation Not in a motif group | ||
| IL_5AA0_134 | 1/BA/683:688, 1/BA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5AA0_135 | 1/BA/774:778, 1/BA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5AA0_136 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_5AA0_137 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5AA0_138 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_5AA0_139 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5AA0_140 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_5AA0_141 | 1/BA/953:954, 1/BA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_5AA0_142 | 1/BA/1025:1027, 1/BA/1034:1036 | No text annotation Not in a motif group | ||
| IL_5AA0_143 | 1/BA/1048:1050, 1/BA/1208:1209 | No text annotation Not in a motif group | homologous IL_6CZR_152 NA | |
| IL_5AA0_144 | 1/BA/1052:1056, 1/BA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_5AA0_145 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_6CZR_155 IL_93353.1 | |
| IL_5AA0_146 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged U Not in a motif group | geometric IL_2PN3_003 IL_83039.13 | |
| IL_5AA0_147 | 1/BA/1061:1063, 1/BA/1193:1195 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_5AA0_149 | 1/BA/1124:1127, 1/BA/1145:1149 | No text annotation Not in a motif group | ||
| IL_5AA0_150 | 1/BA/1127:1132, 1/BA/1142:1145 | No text annotation Not in a motif group | ||
| IL_5AA0_151 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation Not in a motif group | homologous IL_6CZR_160 IL_09129.1 | |
| IL_5AA0_152 | 1/BA/1255:1258, 1/BA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_5AA0_153 | 1/BA/1258:1262, 1/BA/1273:1277 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_5AA0_154 | 1/BA/1303:1308, 1/BA/1329:1334 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_5AA0_156 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5AA0_157 | 1/BA/1405:1410, 1/BA/1490:1496 | No text annotation Not in a motif group | ||
| IL_5AA0_158 | 1/BA/1412:1414, 1/BA/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_5AA0_159 | 1/BA/1416:1419, 1/BA/1481:1484 | No text annotation Not in a motif group | ||
| IL_5AA0_160 | 1/BA/1430:1435, 1/BA/1466:1470 | Triple sheared related Not in a motif group | geometric IL_5J7L_063 IL_64879.2 | |
| IL_5AA0_161 | 1/BA/1435:1437, 1/BA/1464:1466 | No text annotation Not in a motif group | homologous IL_6CZR_171 IL_95997.1 | |
| IL_5AA0_162 | 1/BA/1440:1447, 1/BA/1459:1461 | No text annotation Not in a motif group | ||
| IL_5AA0_168 | 1/BD/49:52, 1/BD/62:65 | No text annotation Not in a motif group | homologous IL_3AMU_001 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5AA0_011 | UU cWW | ||
| IL_5AA0_014 | No text annotation | ||
| IL_5AA0_054 | No text annotation | ||
| IL_5AA0_060 | No text annotation | ||
| IL_5AA0_148 | No text annotation | ||
| IL_5AA0_155 | No text annotation | ||
| IL_5AA0_163 | No text annotation | ||
| IL_5AA0_164 | No text annotation | ||
| IL_5AA0_165 | No text annotation | ||
| IL_5AA0_166 | Tandem non-canonical cWW pairs | ||
| IL_5AA0_167 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5AA0_001 | 1/AA/683:687, 1/AA/775:777, 1/AA/787:794 | No text annotation Not in a motif group | ||
| J3_5AA0_002 | 1/AA/698:700, 1/AA/732:736, 1/AA/760:763 | No text annotation Not in a motif group | ||
| J3_5AA0_003 | 1/AA/1298:1303, 1/AA/1625:1627, 1/AA/1639:1642 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_5AA0_004 | 1/AA/1306:1309, 1/AA/1605:1611, 1/AA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5AA0_005 | 1/AA/1343:1350, 1/AA/1381:1385, 1/AA/1402:1404 | No text annotation Not in a motif group | ||
| J3_5AA0_006 | 1/AA/2090:2093, 1/AA/2196:2205, 1/AA/2219:2229 | No text annotation Not in a motif group | ||
| J3_5AA0_007 | 1/AA/2295:2297, 1/AA/2321:2323, 1/AA/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_5AA0_008 | 1/AA/2517:2520, 1/AA/2545:2547, 1/AA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5AA0_009 | 1/AB/11:16, 1/AB/68:70, 1/AB/106:109 | No text annotation Not in a motif group | ||
| J3_5AA0_010 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5AA0_011 | 1/BA/936:939, 1/BA/1344:1350, 1/BA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_5AA0_012 | 1/BA/943:946, 1/BA/1235:1237, 1/BA/1337:1340 | No text annotation Not in a motif group | ||
| J3_5AA0_013 | 1/BA/955:962, 1/BA/973:984, 1/BA/1221:1225 | No text annotation Not in a motif group | ||
| J3_5AA0_014 | 1/BA/990:997, 1/BA/1044:1047, 1/BA/1210:1215 | No text annotation Not in a motif group | ||
| J3_5AA0_015 | 1/BA/1064:1068, 1/BA/1107:1113, 1/BA/1187:1192 | No text annotation Not in a motif group | ||
| J3_5AA0_016 | 1/BA/1116:1118, 1/BA/1155:1162, 1/BA/1174:1184 | No text annotation Not in a motif group | ||
| J3_5AA0_017 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: