5AA0 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/AA/25:30,1/AA/510:515 | NA | NA |
2 | ➜ | 1/AA/36:37,1/AA/442:444 | NA | NA |
3 | ➜ | 1/AA/43:44,1/AA/434:436 | NA | NA |
4 | ➜ | 1/AA/81:85,1/AA/97:105 | NA | NA |
5 | ➜ | 1/AA/183:184,1/AA/212:215 | NA | NA |
6 | ➜ | 1/AA/188:194,1/AA/201:208 | NA | NA |
7 | ➜ | 1/AA/239:245,1/AA/253:258 | NA | NA |
8 | ➜ | 1/AA/271:272,1/AA/365:366 | NA | NA |
9 | ➜ | 1/AA/273:273A,1/AA/363E:364 | NA | NA |
10 | ➜ | 1/AA/273A:273C,1/AA/363C:363E | NA | NA |
11 | ➜ | 1/AA/288:292,1/AA/348:353 | NA | NA |
12 | ➜ | 1/AA/292:295,1/AA/343:348 | NA | NA |
13 | ➜ | 1/AA/672:674,1/AA/806:808 | NA | NA |
14 | ➜ | 1/AA/674:678,1/AA/799:806 | NA | NA |
15 | ➜ | 1/AA/697:698,1/AA/763:765 | NA | NA |
16 | ➜ | 1/AA/703:707,1/AA/724:729 | NA | NA |
17 | ➜ | 1/AA/738:741,1/AA/756:758 | NA | NA |
18 | ➜ | 1/AA/837:838,1/AA/940:942 | NA | NA |
19 | ➜ | 1/AA/844:846,1/AA/932:934 | NA | NA |
20 | ➜ | 1/AA/846:850,1/AA/928:932 | NA | NA |
21 | ➜ | 1/AA/858:860,1/AA/917:919 | NA | NA |
22 | ➜ | 1/AA/860:862,1/AA/915:917 | NA | NA |
23 | ➜ | 1/AA/862:863,1/AA/913:915 | NA | NA |
24 | ➜ | 1/AA/864:868,1/AA/909:912 | NA | NA |
25 | ➜ | 1/AA/870:872,1/AA/905:907 | NA | NA |
26 | ➜ | 1/AA/952:954,1/AA/963:965 | NA | NA |
27 | ➜ | 1/AA/994:996,1/AA/1159:1160 | NA | NA |
28 | ➜ | 1/AA/998:1002,1/AA/1153:1157 | NA | NA |
29 | ➜ | 1/AA/1004:1011,1/AA/1150:1151 | NA | NA |
30 | ➜ | 1/AA/1011:1013,1/AA/1149:1150 | NA | NA |
31 | ➜ | 1/AA/1019:1030,1/AA/1124:1143 | NA | NA |
32 | ➜ | 1/AA/1031:1034,1/AA/1121:1123 | NA | NA |
33 | ➜ | 1/AA/1055:1087,1/AA/1102:1104 | NA | NA |
34 | ➜ | 1/AA/1087:1091,1/AA/1100:1102 | NA | NA |
35 | ➜ | 1/AA/1165:1167,1/AA/1182:1184 | NA | NA |
36 | ➜ | 1/AA/1197:1198,1/AA/1247:1249 | NA | NA |
37 | ➜ | 1/AA/1202:1207,1/AA/1239:1243 | NA | NA |
38 | ➜ | 1/AA/1208:1215,1/AA/1234:1238 | NA | NA |
39 | ➜ | 1/AA/1219:1221,1/AA/1228:1230 | NA | NA |
40 | ➜ | 1/AA/1319:1324,1/AA/1330:1333 | NA | NA |
41 | ➜ | 1/AA/1351:1355,1/AA/1376:1380 | NA | NA |
42 | ➜ | 1/AA/1357:1361,1/AA/1370:1374 | NA | NA |
43 | ➜ | 1/AA/1415:1421,1/AA/1577:1587 | NA | NA |
44 | ➜ | 1/AA/1421:1423,1/AA/1575:1577 | NA | NA |
45 | ➜ | 1/AA/1432:1435,1/AA/1557:1561 | NA | NA |
46 | ➜ | 1/AA/1437:1440,1/AA/1551:1555 | NA | NA |
47 | ➜ | 1/AA/1448:1449A,1/AA/1462:1463 | NA | NA |
48 | ➜ | 1/AA/1474:1478,1/AA/1515:1517 | NA | NA |
49 | ➜ | 1/AA/1478:1482,1/AA/1507:1515 | NA | NA |
50 | ➜ | 1/AA/1488:1491,1/AA/1499:1501 | NA | NA |
51 | ➜ | 1/AA/1525:1531,1/AA/1540:1546 | NA | NA |
52 | ➜ | 1/AA/1651:1656,1/AA/2004:2006 | NA | NA |
53 | ➜ | 1/AA/1663:1665,1/AA/1995:1997 | NA | NA |
54 | ➜ | 1/AA/1686:1691,1/AA/1696:1702 | NA | NA |
55 | ➜ | 1/AA/1712:1717,1/AA/1742:1746 | NA | NA |
56 | ➜ | 1/AA/1770:1771,1/AA/1980:1982 | NA | NA |
57 | ➜ | 1/AA/1798:1804,1/AA/1813:1821 | NA | NA |
58 | ➜ | 1/AA/1836:1840,1/AA/1902:1904 | NA | NA |
59 | ➜ | 1/AA/1841:1842,1/AA/1898:1901 | NA | NA |
60 | ➜ | 1/AA/1846:1849,1/AA/1893:1894 | NA | NA |
61 | ➜ | 1/AA/1851:1855,1/AA/1887:1891 | NA | NA |
62 | ➜ | 1/AA/1856:1860,1/AA/1882:1886 | NA | NA |
63 | ➜ | 1/AA/1934:1945,1/AA/1961:1964 | NA | NA |
64 | ➜ | 1/AA/2050:2052,1/AA/2617:2618 | NA | NA |
65 | ➜ | 1/AA/2054:2056,1/AA/2612:2615 | NA | NA |
66 | ➜ | 1/AA/2067:2069,1/AA/2442:2443 | NA | NA |
67 | ➜ | 1/AA/2070:2071,1/AA/2438:2441 | NA | NA |
68 | ➜ | 1/AA/2081:2083,1/AA/2236:2239 | NA | NA |
69 | ➜ | 1/AA/2085:2087,1/AA/2232:2234 | NA | NA |
70 | ➜ | 1/AA/2108:2110,1/AA/2179:2181 | NA | NA |
71 | ➜ | 1/AA/2110:2120,1/AA/2178:2179 | NA | NA |
72 | ➜ | 1/AA/2124:2127,1/AA/2161:2174 | NA | NA |
73 | ➜ | 1/AA/2130:2136,1/AA/2155:2158 | NA | NA |
74 | ➜ | 1/AA/2297:2299,1/AA/2317:2321 | NA | NA |
75 | ➜ | 1/AA/2350:2353,1/AA/2364:2367 | NA | NA |
76 | ➜ | 1/AA/2401:2403,1/AA/2414:2415 | NA | NA |
77 | ➜ | 1/AA/2454:2455,1/AA/2496:2498 | NA | NA |
78 | ➜ | 1/AA/2457:2460,1/AA/2490:2494 | NA | NA |
79 | ➜ | 1/AA/2466:2470,1/AA/2480:2484 | NA | NA |
80 | ➜ | 1/AA/2507:2508,1/AA/2580:2582 | NA | NA |
81 | ➜ | 1/AA/2510:2512,1/AA/2574:2578 | NA | NA |
82 | ➜ | 1/AA/2512:2513,1/AA/2571:2574 | NA | NA |
83 | ➜ | 1/AA/2521:2522,1/AA/2541:2544 | NA | NA |
84 | ➜ | 1/AA/2591:2592,1/AA/2601:2603 | NA | NA |
85 | ➜ | 1/AA/2637:2640,1/AA/2774:2781 | NA | NA |
86 | ➜ | 1/AA/2646:2648,1/AA/2672:2674 | NA | NA |
87 | ➜ | 1/AA/2680:2684,1/AA/2725:2727 | NA | NA |
88 | ➜ | 1/AA/2686:2691,1/AA/2718:2723 | NA | NA |
89 | ➜ | 1/AA/2695:2696,1/AA/2711:2714 | NA | NA |
90 | ➜ | 1/AA/2696:2698,1/AA/2709:2711 | NA | NA |
91 | ➜ | 1/AA/2737:2742,1/AA/2762:2767 | NA | NA |
92 | ➜ | 1/AA/2838:2839,1/AA/2878:2880 | NA | NA |
93 | ➜ | 1/AA/2843:2845,1/AA/2871:2874 | NA | NA |
94 | ➜ | 1/AA/2846:2852,1/AA/2865:2870 | NA | NA |
95 | ➜ | 1/AB/8:10,1/AB/110:112 | NA | NA |
96 | ➜ | 1/AB/17:18,1/AB/65:67 | NA | NA |
97 | ➜ | 1/AB/22:29,1/AB/55:61 | NA | NA |
98 | ➜ | 1/AB/30:31,1/AB/51:54 | NA | NA |
99 | ➜ | 1/AB/34:38,1/AB/44:48 | NA | NA |
100 | ➜ | 1/AB/71:79,1/AB/97:105 | NA | NA |
101 | ➜ | 1/BA/30:32,1/BA/552:553 | NA | NA |
102 | ➜ | 1/BA/44:46,1/BA/395:398 | NA | NA |
103 | ➜ | 1/BA/47:52,1/BA/359:361 | NA | NA |
104 | ➜ | 1/BA/54:56,1/BA/356:357 | NA | NA |
105 | ➜ | 1/BA/63:66,1/BA/103:104 | NA | NA |
106 | ➜ | 1/BA/67:69,1/BA/99:102 | NA | NA |
107 | ➜ | 1/BA/129:131,1/BA/231:232 | NA | NA |
108 | ➜ | 1/BA/132:136,1/BA/227:230 | NA | NA |
109 | ➜ | 1/BA/148:153,1/BA/168:174 | NA | NA |
110 | ➜ | 1/BA/185:186B,1/BA/191E:192 | NA | NA |
111 | ➜ | 1/BA/242:247,1/BA/277:284 | NA | NA |
112 | ➜ | 1/BA/249:252,1/BA/274:275 | NA | NA |
113 | ➜ | 1/BA/292:293,1/BA/304:308 | NA | NA |
114 | ➜ | 1/BA/367:369,1/BA/392:393 | NA | NA |
115 | ➜ | 1/BA/371:375,1/BA/389:390 | NA | NA |
116 | ➜ | 1/BA/375:376,1/BA/387:389 | NA | NA |
117 | ➜ | 1/BA/409:416,1/BA/427:433 | NA | NA |
118 | ➜ | 1/BA/446:450,1/BA/483:488 | NA | NA |
119 | ➜ | 1/BA/450:455,1/BA/477:483 | NA | NA |
120 | ➜ | 1/BA/504:511,1/BA/540:541 | NA | NA |
121 | ➜ | 1/BA/515:521,1/BA/528:536 | NA | NA |
122 | ➜ | 1/BA/579:584,1/BA/757:762 | NA | NA |
123 | ➜ | 1/BA/594:596,1/BA/644:645 | NA | NA |
124 | ➜ | 1/BA/597:598,1/BA/640:643 | NA | NA |
125 | ➜ | 1/BA/605:612,1/BA/628:633 | NA | NA |
126 | ➜ | 1/BA/654:655,1/BA/751:754 | NA | NA |
127 | ➜ | 1/BA/657:658,1/BA/747:749 | NA | NA |
128 | ➜ | 1/BA/662:666,1/BA/740:743 | NA | NA |
129 | ➜ | 1/BA/673:677,1/BA/713:717 | NA | NA |
130 | ➜ | 1/BA/683:688,1/BA/699:707 | NA | NA |
131 | ➜ | 1/BA/774:778,1/BA/804:805 | NA | NA |
132 | ➜ | 1/BA/779:783,1/BA/799:803 | NA | NA |
133 | ➜ | 1/BA/887:894,1/BA/905:910 | NA | NA |
134 | ➜ | 1/BA/922:923,1/BA/1393:1395 | NA | NA |
135 | ➜ | 1/BA/925:927,1/BA/1390:1391 | NA | NA |
136 | ➜ | 1/BA/933:935,1/BA/1380:1384 | NA | NA |
137 | ➜ | 1/BA/953:954,1/BA/1226:1228 | NA | NA |
138 | ➜ | 1/BA/1025:1027,1/BA/1034:1036 | NA | NA |
139 | ➜ | 1/BA/1048:1050,1/BA/1208:1209 | NA | NA |
140 | ➜ | 1/BA/1052:1056,1/BA/1204:1206 | NA | NA |
141 | ➜ | 1/BA/1057:1058,1/BA/1199:1203 | NA | NA |
142 | ➜ | 1/BA/1060:1061,1/BA/1195:1197 | NA | NA |
143 | ➜ | 1/BA/1061:1063,1/BA/1193:1195 | NA | NA |
144 | ➜ | 1/BA/1124:1127,1/BA/1145:1149 | NA | NA |
145 | ➜ | 1/BA/1127:1132,1/BA/1142:1145 | NA | NA |
146 | ➜ | 1/BA/1247:1253,1/BA/1284:1290 | NA | NA |
147 | ➜ | 1/BA/1255:1258,1/BA/1277:1282 | NA | NA |
148 | ➜ | 1/BA/1258:1262,1/BA/1273:1277 | NA | NA |
149 | ➜ | 1/BA/1303:1308,1/BA/1329:1334 | NA | NA |
150 | ➜ | 1/BA/1401:1404,1/BA/1497:1501 | NA | NA |
151 | ➜ | 1/BA/1405:1410,1/BA/1490:1496 | NA | NA |
152 | ➜ | 1/BA/1412:1414,1/BA/1486:1488 | NA | NA |
153 | ➜ | 1/BA/1416:1419,1/BA/1481:1484 | NA | NA |
154 | ➜ | 1/BA/1430:1435,1/BA/1466:1470 | NA | NA |
155 | ➜ | 1/BA/1435:1437,1/BA/1464:1466 | NA | NA |
156 | ➜ | 1/BA/1440:1447,1/BA/1459:1461 | NA | NA |
157 | ➜ | 1/BD/49:52,1/BD/62:65 | NA | NA |
Problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/AA/60:67 | NA | NA |
2 | ➜ | 1/AA/87:95 | NA | NA |
3 | ➜ | 1/AA/123:128 | NA | NA |
4 | ➜ | 1/AA/137A:141A | NA | NA |
5 | ➜ | 1/AA/152:174 | NA | NA |
6 | ➜ | 1/AA/194:201 | NA | NA |
7 | ➜ | 1/AA/225:230 | NA | NA |
8 | ➜ | 1/AA/245:253 | NA | NA |
9 | ➜ | 1/AA/270J:270P | NA | NA |
10 | ➜ | 1/AA/305:312 | NA | NA |
11 | ➜ | 1/AA/319:323 | NA | NA |
12 | ➜ | 1/AA/327:335 | NA | NA |
13 | ➜ | 1/AA/383:391 | NA | NA |
14 | ➜ | 1/AA/411:416 | NA | NA |
15 | ➜ | 1/AA/462:467 | NA | NA |
16 | ➜ | 1/AA/487:493 | NA | NA |
17 | ➜ | 1/AA/544:549 | NA | NA |
18 | ➜ | 1/AA/564:577 | NA | NA |
19 | ➜ | 1/AA/605:623 | NA | NA |
20 | ➜ | 1/AA/629:634 | NA | NA |
21 | ➜ | 1/AA/638:650 | NA | NA |
22 | ➜ | 1/AA/712:719 | NA | NA |
23 | ➜ | 1/AA/744:753 | NA | NA |
24 | ➜ | 1/AA/779:785 | NA | NA |
25 | ➜ | 1/AA/826:831 | NA | NA |
26 | ➜ | 1/AA/873:904 | NA | NA |
27 | ➜ | 1/AA/955:962 | NA | NA |
28 | ➜ | 1/AA/978:985 | NA | NA |
29 | ➜ | 1/AA/1092:1099 | NA | NA |
30 | ➜ | 1/AA/1170:1179 | NA | NA |
31 | ➜ | 1/AA/1221:1228 | NA | NA |
32 | ➜ | 1/AA/1281:1289 | NA | NA |
33 | ➜ | 1/AA/1324:1330 | NA | NA |
34 | ➜ | 1/AA/1362:1369 | NA | NA |
35 | ➜ | 1/AA/1389:1398 | NA | NA |
36 | ➜ | 1/AA/1450:1461 | NA | NA |
37 | ➜ | 1/AA/1492:1498 | NA | NA |
38 | ➜ | 1/AA/1533:1538 | NA | NA |
39 | ➜ | 1/AA/1612:1619 | NA | NA |
40 | ➜ | 1/AA/1630:1636 | NA | NA |
41 | ➜ | 1/AA/1691:1696 | NA | NA |
42 | ➜ | 1/AA/1717:1742 | NA | NA |
43 | ➜ | 1/AA/1752:1756 | NA | NA |
44 | ➜ | 1/AA/1779:1785 | NA | NA |
45 | ➜ | 1/AA/1806:1811 | NA | NA |
46 | ➜ | 1/AA/1864:1878 | NA | NA |
47 | ➜ | 1/AA/1909:1922 | NA | NA |
48 | ➜ | 1/AA/1950:1956 | NA | NA |
49 | ➜ | 1/AA/2027:2036 | NA | NA |
50 | ➜ | 1/AA/2143:2148 | NA | NA |
51 | ➜ | 1/AA/2209:2215 | NA | NA |
52 | ➜ | 1/AA/2249:2255 | NA | NA |
53 | ➜ | 1/AA/2264:2276 | NA | NA |
54 | ➜ | 1/AA/2304:2312 | NA | NA |
55 | ➜ | 1/AA/2324:2331 | NA | NA |
56 | ➜ | 1/AA/2355:2362 | NA | NA |
57 | ➜ | 1/AA/2374:2379 | NA | NA |
58 | ➜ | 1/AA/2404:2413 | NA | NA |
59 | ➜ | 1/AA/2471:2479 | NA | NA |
60 | ➜ | 1/AA/2528:2535 | NA | NA |
61 | ➜ | 1/AA/2551:2557 | NA | NA |
62 | ➜ | 1/AA/2594:2599 | NA | NA |
63 | ➜ | 1/AA/2648:2672 | NA | NA |
64 | ➜ | 1/AA/2701:2706 | NA | NA |
65 | ➜ | 1/AA/2746:2758 | NA | NA |
66 | ➜ | 1/AA/2819:2827 | NA | NA |
67 | ➜ | 1/AA/2856:2861 | NA | NA |
68 | ➜ | 1/AB/38:44 | NA | NA |
69 | ➜ | 1/AB/86:90 | NA | NA |
70 | ➜ | 1/BA/12:22 | NA | NA |
71 | ➜ | 1/BA/81:88 | NA | NA |
72 | ➜ | 1/BA/158:163 | NA | NA |
73 | ➜ | 1/BA/186F:191A | NA | NA |
74 | ➜ | 1/BA/201:216 | NA | NA |
75 | ➜ | 1/BA/259:267 | NA | NA |
76 | ➜ | 1/BA/296:301 | NA | NA |
77 | ➜ | 1/BA/320:333 | NA | NA |
78 | ➜ | 1/BA/342:347 | NA | NA |
79 | ➜ | 1/BA/379:384 | NA | NA |
80 | ➜ | 1/BA/419:424 | NA | NA |
81 | ➜ | 1/BA/458:474 | NA | NA |
82 | ➜ | 1/BA/522:527 | NA | NA |
83 | ➜ | 1/BA/617:623 | NA | NA |
84 | ➜ | 1/BA/689:698 | NA | NA |
85 | ➜ | 1/BA/726:731 | NA | NA |
86 | ➜ | 1/BA/786:796 | NA | NA |
87 | ➜ | 1/BA/838:848 | NA | NA |
88 | ➜ | 1/BA/862:867 | NA | NA |
89 | ➜ | 1/BA/897:902 | NA | NA |
90 | ➜ | 1/BA/963:972 | NA | NA |
91 | ➜ | 1/BA/1012:1017 | NA | NA |
92 | ➜ | 1/BA/1028B:1032A | NA | NA |
93 | ➜ | 1/BA/1076:1081 | NA | NA |
94 | ➜ | 1/BA/1089:1096 | NA | NA |
95 | ➜ | 1/BA/1134:1140 | NA | NA |
96 | ➜ | 1/BA/1165:1171 | NA | NA |
97 | ➜ | 1/BA/1265:1270 | NA | NA |
98 | ➜ | 1/BA/1314:1323 | NA | NA |
99 | ➜ | 1/BA/1356:1366 | NA | NA |
100 | ➜ | 1/BA/1449:1454 | NA | NA |
101 | ➜ | 1/BA/1515:1520 | NA | NA |
102 | ➜ | 1/BC/13:22 | NA | NA |
103 | ➜ | 1/BC/30:40 | NA | NA |
104 | ➜ | 1/BC/53:61 | NA | NA |
105 | ➜ | 1/BD/13:22 | NA | NA |
106 | ➜ | 1/BD/31:39 | NA | NA |
107 | ➜ | 1/BD/53:61 | NA | NA |
108 | ➜ | 1/BE/13:22 | NA | NA |
109 | ➜ | 1/BE/31:39 | NA | NA |
110 | ➜ | 1/BE/53:61 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/AA/683:687,1/AA/775:777,1/AA/787:794 | NA | NA |
2 | ➜ | 1/AA/698:700,1/AA/732:736,1/AA/760:763 | NA | NA |
3 | ➜ | 1/AA/1298:1303,1/AA/1625:1627,1/AA/1639:1642 | NA | NA |
4 | ➜ | 1/AA/1306:1309,1/AA/1605:1611,1/AA/1620:1622 | NA | NA |
5 | ➜ | 1/AA/1343:1350,1/AA/1381:1385,1/AA/1402:1404 | NA | NA |
6 | ➜ | 1/AA/2090:2093,1/AA/2196:2205,1/AA/2219:2229 | NA | NA |
7 | ➜ | 1/AA/2295:2297,1/AA/2321:2323,1/AA/2332:2337 | NA | NA |
8 | ➜ | 1/AA/2517:2520,1/AA/2545:2547,1/AA/2561:2567 | NA | NA |
9 | ➜ | 1/AB/11:16,1/AB/68:70,1/AB/106:109 | NA | NA |
10 | ➜ | 1/BA/826:829,1/BA/857:861,1/BA/868:874 | NA | NA |
11 | ➜ | 1/BA/936:939,1/BA/1344:1350,1/BA/1372:1379 | NA | NA |
12 | ➜ | 1/BA/943:946,1/BA/1235:1237,1/BA/1337:1340 | NA | NA |
13 | ➜ | 1/BA/955:962,1/BA/973:984,1/BA/1221:1225 | NA | NA |
14 | ➜ | 1/BA/990:997,1/BA/1044:1047,1/BA/1210:1215 | NA | NA |
15 | ➜ | 1/BA/1064:1068,1/BA/1107:1113,1/BA/1187:1192 | NA | NA |
16 | ➜ | 1/BA/1116:1118,1/BA/1155:1162,1/BA/1174:1184 | NA | NA |
17 | ➜ | 1/BA/1237:1241,1/BA/1296:1303,1/BA/1334:1337 | NA | NA |
Problematic loops
No problematic loops
Coloring options: