#Varna 2DMotifNtsSize
1
  • HL_67042.13
HL_67042.13
  • Basepair signature: cWW-tSH-R-R
  • History status: Updated, 1 parent
  • Name: GNRA Hairpin motifs
6238
2
  • HL_72498.13
HL_72498.13
  • Basepair signature: cWW-tWH-R-R-R
  • History status: Updated, 1 parent
  • Name: T-loops with two bulged bases
967
3
  • HL_39895.7
HL_39895.7
  • Basepair signature: cWW-tSW-R
  • History status: Updated, 1 parent
  • Name: UNCG Hairpin motifs
635
4
  • HL_18781.5
HL_18781.5
  • Basepair signature: cWW-tSH-R-R-R-R
  • History status: Updated, 1 parent
  • Name: Double sheared (tSH) with U-turn
821
5
  • HL_91226.4
HL_91226.4
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Updated, 1 parent
  • Name: Kissing Hairpin motif
817
6
  • HL_97270.4
HL_97270.4
  • Basepair signature: cWW-tWH-R-R-R
  • History status: Updated, 1 parent
  • Name: T-loops with 1 bulged base
715
7
  • HL_52574.4
HL_52574.4
  • Basepair signature: cWW-tWH-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 92 (H92) A-site Loop. GNRA-like with extra stacked base.
715
8
  • HL_74465.5
HL_74465.5
  • Basepair signature: cWW-cWW-R-tSH-R-R
  • History status: Exact match
  • Name: tRNA Anti-Codon loop
913
9
  • HL_27271.2
HL_27271.2
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: LSU Helix 96 (H96) Hairpin Loop
612
10
  • HL_49036.4
HL_49036.4
  • Basepair signature: cWW-tSH-R-R
  • History status: Updated, 2 parents
  • Name: LSU Helix 11 (H11) Hairpin Loop. GNRA-like. | GNRA with one bulged base
612
11
  • HL_56824.3
HL_56824.3
  • Basepair signature: cWW-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 60A. LSU Helix 63A.
511
12
  • HL_48039.2
HL_48039.2
  • Basepair signature: cWW-R
  • History status: Exact match
  • Name: MS2 virus RNA Hairpin
411
13
  • HL_46175.3
HL_46175.3
  • Basepair signature: cWW-R-tSH-R-R-R-R
  • History status: Updated, 1 parent
  • Name: 16S helix 23 and 24 hairpin loops
1011
14
  • HL_68081.4
HL_68081.4
  • Basepair signature: cWW-R-R-tWH-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 20 Hairpin loop
810
15
  • HL_75759.5
HL_75759.5
  • Basepair signature: cWW-R
  • History status: Updated, 1 parent
410
16
  • HL_17723.5
HL_17723.5
  • Basepair signature: cWW-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 22 (H22) Hairpin Loop. Forms Pseudknot.
710
17
  • HL_15603.2
HL_15603.2
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: U1A protein-binding Hairpin Loop.
129
18
  • HL_33402.4
HL_33402.4
  • Basepair signature: cWW-tSH-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 13 (H13) Hairpin loop. GNRA-like.
79
19
  • HL_80459.4
HL_80459.4
  • Basepair signature: cWW-R-R
  • History status: Updated, 1 parent
69
20
  • HL_24544.3
HL_24544.3
  • Basepair signature: cWW-tWH-R-tSH-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 53 (H53) Hairpin Loop. T-loop like.
98
21
  • HL_34027.3
HL_34027.3
  • Basepair signature: cWW-R-R-R
  • History status: Updated, 1 parent
  • Name: 5S Loop C - Upper part of Hairpin Loop.
68
22
  • HL_11547.3
HL_11547.3
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 80 (H80) P-site Hairpin Loop.
88
23
  • HL_87844.3
HL_87844.3
  • Basepair signature: cWW-tSH-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 11 (H11) Hairpin Loop. GNRA-like.
78
24
  • HL_82294.3
HL_82294.3
  • Basepair signature: cWW-cWW-R-R
  • History status: Exact match
  • Name: SSU Helix 37 (h37) Hairpin loop.
78
25
  • HL_70420.3
HL_70420.3
  • Basepair signature: cWW-tSH-cWH-tSH-tWH-R-tHW-tHW-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 97 Hairpin loop
157
26
  • HL_42677.2
HL_42677.2
  • Basepair signature: cWW
  • History status: Exact match
57
27
  • HL_39872.3
HL_39872.3
  • Basepair signature: cWW-cSW-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 99A (H99A) Hairpin Loop. Closed by cSW AA.
97
28
  • HL_01926.4
HL_01926.4
  • Basepair signature: cWW-R-R-tSH-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 71 (H71) Hairpin Loop.
97
29
  • HL_18156.3
HL_18156.3
  • Basepair signature: cWW-R-R-tWH-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 72 (H72) Hairpin Loop
107
30
  • HL_41833.3
HL_41833.3
  • Basepair signature: cWW-tSH-tHH-tWW-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 81 (H81) Hairpin Loop
137
31
  • HL_34108.3
HL_34108.3
  • Basepair signature: cWW-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 37 (H37) Hairpin Loop.
67
32
  • HL_87136.3
HL_87136.3
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 39A Hairpin loop
87
33
  • HL_46489.3
HL_46489.3
  • Basepair signature: cWW-tSH-R-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU H89 Hairpin Loop
97
34
  • HL_39942.3
HL_39942.3
  • Basepair signature: cWW-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 91 (H91) Hairpin Loop
87
35
  • HL_06643.3
HL_06643.3
  • Basepair signature: cWW-cSH
  • History status: Exact match
  • Name: tRNA D-loop. Sec tRNA
56
36
  • HL_89236.1
HL_89236.1
  • Basepair signature: cWW-tSH-R-R-R-R-R
  • History status: New id, 2 parents
  • Name: LSU Helix 69 (H69) Hairpin Loop
96
37
  • HL_85534.2
HL_85534.2
  • Basepair signature: cWW-tWH-tWH-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 65 (H65) Hairpin Loop. T-loop like.
116
38
  • HL_11509.3
HL_11509.3
  • Basepair signature: cWW-R-R-cSH-cSH-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 6 (H6) Hairpin Loop.
106
39
  • HL_57514.2
HL_57514.2
  • Basepair signature: cWW-R
  • History status: Exact match
  • Name: Two base, cross-stacked hairpin loop
46
40
  • HL_88311.3
HL_88311.3
  • Basepair signature: cWW-R-tSW-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 35 (H35) Hairpin Loop
106
41
  • HL_62228.4
HL_62228.4
  • Basepair signature: cWW-R-tSW-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 35A (H35A) Hairpin Loop
66
42
  • HL_75579.3
HL_75579.3
  • Basepair signature: cWW
  • History status: Updated, 2 parents
56
43
  • HL_95720.1
HL_95720.1
  • Basepair signature: cWW-R-tSH-R-R
  • History status: Exact match
  • Name: Double tSH (double sheared) with bulged base | LSU Helix 71 (H71) Hairpin Loop. | Double tSH (double sheared) with bulged base
85
44
  • HL_45018.3
HL_45018.3
  • Basepair signature: cWW-cWW-R-cSS-cSS-R
  • History status: Exact match
  • Name: Hairpin-Hairpin Interacting HL
115
45
  • HL_78731.2
HL_78731.2
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 7 (H7) Hairpin Loop. Forms Pseudo-knot
95
46
  • HL_66174.1
HL_66174.1
  • Basepair signature: cWW-R-cSW-R-cSH
  • History status: Exact match
  • Name: cHS GU/cWS Double Platform creates Intercalation site
95
47
  • HL_72273.1
HL_72273.1
  • Basepair signature: cWW-cWS-R-R
  • History status: Exact match
  • Name: tRNA D-loop
95
48
  • HL_86077.1
HL_86077.1
  • Basepair signature: cWW-tSH-R-R
  • History status: New id, 2 parents
  • Name: GNRA with one bulged base | GNRA-like with bulged base.
65
49
  • HL_82538.2
HL_82538.2
  • Basepair signature: cWW-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking
55
50
  • HL_31318.1
HL_31318.1
  • Basepair signature: cWW-R-tHW-R-R-R-R-R
  • History status: New id, 2 parents
  • Name: SSU Central Pseudoknot (forms helix 2)
105
51
  • HL_72543.2
HL_72543.2
  • Basepair signature: cWW-tSH-R-R-R-R-R-R
  • History status: Exact match
  • Name: LSU Helix 43 (H43) Hairpin Loop. T-loop Like.
115
52
  • HL_08382.3
HL_08382.3
  • Basepair signature: cWW-R-R-R
  • History status: Updated, 1 parent
64
53
  • HL_99908.1
HL_99908.1
  • Basepair signature: cWW-cSH-tHW-R-R-R
  • History status: New id, 2 parents
  • Name: LSU Helix 69 (H69) Hairpin Loop
104
54
  • HL_62881.1
HL_62881.1
  • Basepair signature: cWW-tSH-tHW-R-tSW-R-R
  • History status: Exact match
  • Name: RNase P Structured Hairpin Loop
104
55
  • HL_25124.2
HL_25124.2
  • Basepair signature: cWW-tSW-R
  • History status: Exact match
  • Name: tSW GA closed tetraloops
64
56
  • HL_55718.1
HL_55718.1
  • Basepair signature: cWW
  • History status: Exact match
  • Name: UNCG-like. cWW Closing pair. | UNCG-like. cWW Closing pair. | LSU: Part of IL/3WJ between H55 and H56.
44
57
  • HL_11376.1
HL_11376.1
  • Basepair signature: cWW
  • History status: Exact match
  • Name: LSU Helix 8 (H8) Hairpin Loop
54
58
  • HL_98523.2
HL_98523.2
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: GNRA-like. Closed by tSH UC.
74
59
  • HL_86115.1
HL_86115.1
  • Basepair signature: cWW-cWS
  • History status: Exact match
54
60
  • HL_61547.5
HL_61547.5
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking
64
61
  • HL_64543.2
HL_64543.2
  • Basepair signature: cWW-R-cSS-R-R-R-R
  • History status: Exact match
  • Name: SSU Helix 31 (h31) Hairpin Loop
104
62
  • HL_82418.1
HL_82418.1
  • Basepair signature: cWW-R-R
  • History status: New id, 1 parent
  • Name: LSU Helix 8 (H8) Hairpin Loop
64
63
  • HL_48116.3
HL_48116.3
  • Basepair signature: cWW-R-R-R
  • History status: Updated, 1 parent
  • Name: GNRA-like with 5'-stacking of first unpaired base.
64
64
  • HL_33875.1
HL_33875.1
  • Basepair signature: cWW-cWW-R-R-R-R-R-R
  • History status: Exact match
  • Name: SSU Helix 43 (h43) Hairpin Loop from T.th. T-loop like.
113
65
  • HL_23182.1
HL_23182.1
  • Basepair signature: cWW-cWW-R-R-R
  • History status: Exact match
103
66
  • HL_76766.4
HL_76766.4
  • Basepair signature: cWW-tSH-R
  • History status: Exact match
63
67
  • HL_35619.3
HL_35619.3
  • Basepair signature: cWW-cWS-R
  • History status: Updated, 2 parents
93
68
  • HL_19221.2
HL_19221.2
  • Basepair signature: cWW-R-cSH
  • History status: Exact match
63
69
  • HL_91693.2
HL_91693.2
  • Basepair signature: cWW-R-R
  • History status: Updated, 1 parent
53
70
  • HL_48254.2
HL_48254.2
  • Basepair signature: cWW-cWH-R-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 84 (H84) Hairpin Loop.
93
71
  • HL_58083.2
HL_58083.2
  • Basepair signature: cWW-tSH-R-R-R-R-R
  • History status: Exact match
113
72
  • HL_16643.1
HL_16643.1
  • Basepair signature: cWW-R-R-R-R
  • History status: New id, 1 parent
  • Name: LSU Helix 71 (H71) Hairpin Loop. | Double tSH (double sheared) with bulged base
73
73
  • HL_80492.2
HL_80492.2
  • Basepair signature: cWW-tSH-cWS-cWS-R
  • History status: Exact match
  • Name: tRNA D-loop
133
74
  • HL_79956.1
HL_79956.1
  • Basepair signature: cWW-tSH-R-R
  • History status: New id, 2 parents
  • Name: GNRA-like with 5'-stacking of first unpaired base.
63
75
  • HL_64371.3
HL_64371.3
  • Basepair signature: cWW-tSH-R-R-R-R-R-R-R
  • History status: Updated, 2 parents
  • Name: SSU Central Pseudoknot (forms helix 2)
123
76
  • HL_21545.2
HL_21545.2
  • Basepair signature: cWW-R-R-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 96 (H96) Hairpin Loop
63
77
  • HL_13707.2
HL_13707.2
  • Basepair signature: cWW-tHH-cSH-R-R
  • History status: Exact match
  • Name: cSH AA Platform containing Hairpin Loop
93
78
  • HL_06997.2
HL_06997.2
  • Basepair signature: cWW-tWH-R-R-R-R-R-R-R
  • History status: Exact match
133
79
  • HL_27429.4
HL_27429.4
  • Basepair signature: cWW-R-R-R-R-R-R-R
  • History status: Updated, 1 parent
113
80
  • HL_98833.3
HL_98833.3
  • Basepair signature: cWW-cWS-R-R-R-R
  • History status: Exact match
113
81
  • HL_84258.1
HL_84258.1
  • Basepair signature: cWW-R-R
  • History status: New id, 2 parents
  • Name: LSU Helix 28 (H28) Hairpin Loop | LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking
63
82
  • HL_78361.1
HL_78361.1
  • Basepair signature: cWW-R-cSS-R-R
  • History status: Exact match
93
83
  • HL_19905.3
HL_19905.3
  • Basepair signature: cWW-R
  • History status: Exact match
  • Name: LSU: Part of IL/3WJ between H55 and H56.
43
84
  • HL_68697.3
HL_68697.3
  • Basepair signature: cWW-R-R-R
  • History status: Updated, 1 parent
63
85
  • HL_41827.1
HL_41827.1
  • Basepair signature: cWW-R-tSW-R-R
  • History status: Exact match
73
86
  • HL_38964.1
HL_38964.1
  • Basepair signature: cWW-R-cHH-R-R-R-R-R
  • History status: New id, 1 parent
  • Name: LSU Helix 84 (H84) Hairpin Loop. E.coli.
112
87
  • HL_91872.1
HL_91872.1
  • Basepair signature: cWW-cWH-tWH-R-R-R
  • History status: Exact match
122
88
  • HL_86123.2
HL_86123.2
  • Basepair signature: cWW-R-R-R-tWH-R-R-R
  • History status: Exact match
  • Name: SSU Helix 42 (h42) Hairpin Loop. T-loop like.
102
89
  • HL_42094.1
HL_42094.1
  • Basepair signature: cWW-cWS-R
  • History status: Exact match
92
90
  • HL_46903.1
HL_46903.1
  • Basepair signature: cWW-R-R-R
  • History status: New id, 1 parent
62
91
  • HL_16728.1
HL_16728.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: New id, 2 parents
  • Name: LSU Helix 71 (H71) Hairpin Loop. | Double tSH (double sheared) with bulged base
82
92
  • HL_74505.1
HL_74505.1
  • Basepair signature: cWW-R
  • History status: Exact match
62
93
  • HL_81510.1
HL_81510.1
  • Basepair signature: cWW-R-R
  • History status: New id, 2 parents
  • Name: LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking
62
94
  • HL_24711.1
HL_24711.1
  • Basepair signature: cWW-tWH-R-R-R
  • History status: Exact match
82
95
  • HL_42553.1
HL_42553.1
  • Basepair signature: cWW-tSH-R-cWS-R-R-R
  • History status: Exact match
132
96
  • HL_86398.1
HL_86398.1
  • Basepair signature: cWW-R-tWH-R-tWH-R-R-R
  • History status: Exact match
122
97
  • HL_26495.1
HL_26495.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
82
98
  • HL_96915.1
HL_96915.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: Exact match
92
99
  • HL_33451.1
HL_33451.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
132
100
  • HL_65924.1
HL_65924.1
  • Basepair signature: cWW-cWW-R-R-tWH-R-tWH-R-R-R
  • History status: Exact match
142
101
  • HL_62967.1
HL_62967.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
52
102
  • HL_93771.1
HL_93771.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
  • Name: tRNA T-loop distorted by RS binding
62
103
  • HL_98577.1
HL_98577.1
  • Basepair signature: cWW-R-R-tHW-R-R-R-R-R-R-R
  • History status: Exact match
142
104
  • HL_90542.1
HL_90542.1
  • Basepair signature: cWW-cWW-R-R
  • History status: Exact match
82
105
  • HL_50312.1
HL_50312.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
62
106
  • HL_42077.3
HL_42077.3
  • Basepair signature: cWW-tSH-R
  • History status: Updated, 1 parent
  • Name: LSU Helix 28 (H28) Hairpin Loop
72
107
  • HL_87554.1
HL_87554.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
52
108
  • HL_06122.1
HL_06122.1
  • Basepair signature: cWW-R-cSH-R
  • History status: Exact match
82
109
  • HL_92635.1
HL_92635.1
  • Basepair signature: cWW-R-R
  • History status: New id, 1 parent
62
110
  • HL_94309.1
HL_94309.1
  • Basepair signature: cWW-tSH-R-R
  • History status: New id, 2 parents
  • Name: GNRA with one bulged base
62
111
  • HL_99633.1
HL_99633.1
  • Basepair signature: cWW-cWW-R-tSW-R
  • History status: Exact match
92
112
  • HL_78660.1
HL_78660.1
  • Basepair signature: cWW
  • History status: New id, no parents
42
113
  • HL_23129.1
HL_23129.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: Exact match
92
114
  • HL_95756.1
HL_95756.1
  • Basepair signature: cWW-R-R-R
  • History status: New id, 1 parent
62
115
  • HL_24473.3
HL_24473.3
  • Basepair signature: cWW-tSH-cWS-tSW-R-R-R-R-R
  • History status: Exact match
  • Name: tRNA D-loop
152
116
  • HL_18587.1
HL_18587.1
  • Basepair signature: cWW-R-tWH-R-R-R
  • History status: Exact match
92
117
  • HL_19399.1
HL_19399.1
  • Basepair signature: cWW-R-R-R-R-R-cSW-R-R-R-R-R-R
  • History status: Exact match
172
118
  • HL_94578.1
HL_94578.1
  • Basepair signature: cWW-cWS-R-R
  • History status: Exact match
102
119
  • HL_86889.1
HL_86889.1
  • Basepair signature: cWW-R-R-R-R-R-R-R
  • History status: New id, 2 parents
  • Name: SSU Central Pseudoknot (forms helix 2)
102
120
  • HL_49210.1
HL_49210.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
92
121
  • HL_17790.1
HL_17790.1
  • Basepair signature: cWW
  • History status: Exact match
  • Name: UNCG-like. cWW Closing pair.
42
122
  • HL_53745.1
HL_53745.1
  • Basepair signature: cWW-R-R
  • History status: New id, 2 parents
62
123
  • HL_54751.2
HL_54751.2
  • Basepair signature: cWW-cWW-R-R-R-R-R-R
  • History status: Exact match
122
124
  • HL_23290.1
HL_23290.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
82
125
  • HL_50461.1
HL_50461.1
  • Basepair signature: cWW-R-R-R-R-R-R-R
  • History status: New id, 2 parents
102
126
  • HL_44467.1
HL_44467.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
122
127
  • HL_38130.2
HL_38130.2
  • Basepair signature: cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
112
128
  • HL_19528.1
HL_19528.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: Exact match
92
129
  • HL_60200.1
HL_60200.1
  • Basepair signature: cWW-tWH-R-R-R-R
  • History status: Exact match
102
130
  • HL_05361.1
HL_05361.1
  • Basepair signature: cWW-cWW-R
  • History status: Exact match
92
131
  • HL_65249.1
HL_65249.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
62
132
  • HL_65347.1
HL_65347.1
  • Basepair signature: cWW-cWW-R-R-R-R-R
  • History status: Exact match
  • Name: SSU Helix 43 (h43) Hairpin Loop E.coli | 16S helix 23 and 24 hairpin loops
102
133
  • HL_42436.1
HL_42436.1
  • Basepair signature: cWW-tHW-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: Kissing Hairpin from di-GMP-II riboswitch
162
134
  • HL_74559.1
HL_74559.1
  • Basepair signature: cWW-R
  • History status: Exact match
  • Name: Two base, cross-stacked hairpin loop
52
135
  • HL_38898.1
HL_38898.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
101
136
  • HL_25195.1
HL_25195.1
  • Basepair signature: cWW-cWH-R-R-R-R-R-R-R
  • History status: Exact match
141
137
  • HL_39422.1
HL_39422.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
91
138
  • HL_67761.1
HL_67761.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
61
139
  • HL_82288.1
HL_82288.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
111
140
  • HL_20920.1
HL_20920.1
  • Basepair signature: cWW-cWW-tWH-R-R-R-R-R
  • History status: Exact match
131
141
  • HL_19132.1
HL_19132.1
  • Basepair signature: cWW-tSH-R-tSH-R
  • History status: Exact match
81
142
  • HL_97022.1
HL_97022.1
  • Basepair signature: cWW-tSH-R
  • History status: New id, 1 parent
71
143
  • HL_99612.1
HL_99612.1
  • Basepair signature: cWW-tSH-R-R-R-R
  • History status: New id, no parents
91
144
  • HL_63997.1
HL_63997.1
  • Basepair signature: cWW
  • History status: New id, 1 parent
61
145
  • HL_44390.1
HL_44390.1
  • Basepair signature: cWW-R-tSW-R-tWH-R-R-R
  • History status: Exact match
121
146
  • HL_78228.1
HL_78228.1
  • Basepair signature: cWW-R-R-R-R-cWS-R-R-R
  • History status: Exact match
121
147
  • HL_08203.1
HL_08203.1
  • Basepair signature: cWW-cWW-tWH-tHH-R
  • History status: Exact match
131
148
  • HL_17008.1
HL_17008.1
  • Basepair signature: cWW-R-R-R-tSW-R-R
  • History status: Exact match
  • Name: Nova-2 KH3 domain binding hairpin
141
149
  • HL_56775.1
HL_56775.1
  • Basepair signature: cWW-cSH-R-R
  • History status: Exact match
91
150
  • HL_13786.1
HL_13786.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
61
151
  • HL_49998.1
HL_49998.1
  • Basepair signature: cWW-R-R-R
  • History status: New id, no parents
71
152
  • HL_52116.1
HL_52116.1
  • Basepair signature: cWW-cWS-R-R-R
  • History status: Exact match
111
153
  • HL_97499.1
HL_97499.1
  • Basepair signature: cWW-R
  • History status: Exact match
51
154
  • HL_88960.1
HL_88960.1
  • Basepair signature: cWW-R-tSW-R-R
  • History status: Exact match
81
155
  • HL_17537.1
HL_17537.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
101
156
  • HL_53789.1
HL_53789.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
61
157
  • HL_56809.1
HL_56809.1
  • Basepair signature: cWW-R
  • History status: Exact match
111
158
  • HL_75850.1
HL_75850.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
61
159
  • HL_30008.1
HL_30008.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
51
160
  • HL_46055.1
HL_46055.1
  • Basepair signature: cWW-R
  • History status: New id, no parents
71
161
  • HL_05113.1
HL_05113.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
111
162
  • HL_99207.1
HL_99207.1
  • Basepair signature: cWW-tSS-R-R
  • History status: Exact match
  • Name: Tetrahymena LSU hairpin poorly modeled
91
163
  • HL_85982.1
HL_85982.1
  • Basepair signature: cWW-R-R
  • History status: New id, no parents
71
164
  • HL_73972.1
HL_73972.1
  • Basepair signature: cWW-bif-tSW
  • History status: Exact match
91
165
  • HL_37962.1
HL_37962.1
  • Basepair signature: cWW-tSH-R-R-R-R
  • History status: Exact match
91
166
  • HL_66877.1
HL_66877.1
  • Basepair signature: cWW-cWW-R-cSW-R-cSH
  • History status: Exact match
  • Name: cSH GU/cWS double platform, intercalation site
111
167
  • HL_04194.1
HL_04194.1
  • Basepair signature: cWW-tSH-tSH-R
  • History status: Exact match
91
168
  • HL_85018.1
HL_85018.1
  • Basepair signature: cWW-R-R-R-R-R-R-R
  • History status: Exact match
101
169
  • HL_99932.1
HL_99932.1
  • Basepair signature: cWW-cWH-R-R-R
  • History status: New id, no parents
101
170
  • HL_52540.1
HL_52540.1
  • Basepair signature: cWW
  • History status: Exact match
71
171
  • HL_12706.1
HL_12706.1
  • Basepair signature: cWW-tSW
  • History status: Exact match
71
172
  • HL_42345.1
HL_42345.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
81
173
  • HL_84888.1
HL_84888.1
  • Basepair signature: cWW-cWW-R-tSH-R-R
  • History status: Exact match
  • Name: T-loop like but without tWH UA
91
174
  • HL_03785.1
HL_03785.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
  • Name: LSU Helix 8 (H8) Hairpin Loop
61
175
  • HL_97784.1
HL_97784.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
181
176
  • HL_53116.1
HL_53116.1
  • Basepair signature: cWW-R-R-R-R
  • History status: New id, no parents
81
177
  • HL_38897.1
HL_38897.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
  • Name: S8 operon binding Hairpin Loop. T-loop like with purine stacking.
81
178
  • HL_85044.1
HL_85044.1
  • Basepair signature: cWW-tSH-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: LSU Helix 10 (H10) Hairpin E.coli
121
179
  • HL_57217.1
HL_57217.1
  • Basepair signature: cWW-R-R-R-cSH
  • History status: Exact match
  • Name: cHS platform Intercalation Site
91
180
  • HL_66880.1
HL_66880.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
121
181
  • HL_19452.1
HL_19452.1
  • Basepair signature: cWW-R-R-cWS-cSH-R-R
  • History status: Exact match
  • Name: tRNA D-loop
141
182
  • HL_59610.1
HL_59610.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
91
183
  • HL_95049.1
HL_95049.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
  • Name: Two base, cross-stacked hairpin loop
91
184
  • HL_70912.1
HL_70912.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
81
185
  • HL_68733.1
HL_68733.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
  • Name: LSU Yeast Hairpin Loop
81
186
  • HL_96994.1
HL_96994.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
111
187
  • HL_99779.1
HL_99779.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
71
188
  • HL_62970.1
HL_62970.1
  • Basepair signature: cWW-R-tSH-tSH-R-tSH-R-R
  • History status: Exact match
131
189
  • HL_59982.1
HL_59982.1
  • Basepair signature: cWW-R-R
  • History status: New id, no parents
61
190
  • HL_27397.1
HL_27397.1
  • Basepair signature: cWW-cWW-R-R
  • History status: Exact match
91
191
  • HL_50059.1
HL_50059.1
  • Basepair signature: cWW-tSW-cSS-R
  • History status: Exact match
  • Name: LSU Helix 35 (H35) Hairpin Loop from Yeast
101
192
  • HL_98233.1
HL_98233.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
91
193
  • HL_04305.1
HL_04305.1
  • Basepair signature: cWW-R-R-R-R
  • History status: New id, no parents
81
194
  • HL_19363.1
HL_19363.1
  • Basepair signature: cWW-cWS-R
  • History status: New id, 1 parent
111
195
  • HL_45358.1
HL_45358.1
  • Basepair signature: cWW-R-R-R-R-tHW-R-R-R-R-R
  • History status: Exact match
  • Name: Double hairpin loop based on GGA triple
131
196
  • HL_90102.1
HL_90102.1
  • Basepair signature: cWW-tSH-tHS-R-R-R-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: Kink-turn-like Hairpin Loop
211
197
  • HL_24108.1
HL_24108.1
  • Basepair signature: cWW-cWW-R-R-R
  • History status: Exact match
111
198
  • HL_62880.1
HL_62880.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
71
199
  • HL_10116.1
HL_10116.1
  • Basepair signature: cWW-tSH-tHS-tSS-R-R-R-cWW-R-R-R-R-R
  • History status: Exact match
  • Name: Kink-turn-like Hairpin Loop
191
200
  • HL_10894.1
HL_10894.1
  • Basepair signature: cWW
  • History status: New id, no parents
61
201
  • HL_33640.1
HL_33640.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
91
202
  • HL_35865.1
HL_35865.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
61
203
  • HL_24707.1
HL_24707.1
  • Basepair signature: cWW-cWS
  • History status: Exact match
91
204
  • HL_19226.1
HL_19226.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
81
205
  • HL_73465.1
HL_73465.1
  • Basepair signature: cWW-cSW-R-R-R-R-R-R-R
  • History status: Exact match
111
206
  • HL_48480.1
HL_48480.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
91
207
  • HL_68435.1
HL_68435.1
  • Basepair signature: cWW-bif-R-R-R
  • History status: Exact match
91
208
  • HL_59182.1
HL_59182.1
  • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
161
209
  • HL_30366.1
HL_30366.1
  • Basepair signature: cWW-tSH-tHW-tHW-cSH-R
  • History status: Exact match
  • Name: LSU Helix 10 (H10) Hairpin E.coli
111
210
  • HL_46570.1
HL_46570.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
101
211
  • HL_25197.1
HL_25197.1
  • Basepair signature: cWW-tSH-tSH-bif-R-R-R-R-R-R-R
  • History status: Exact match
171
212
  • HL_30731.1
HL_30731.1
  • Basepair signature: cWW-R
  • History status: Exact match
71
213
  • HL_47337.1
HL_47337.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
71
214
  • HL_79038.1
HL_79038.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
  • Name: LSU Helix 12 (H12) Hairpin Loop. GNRA-like with altered stacking
61
215
  • HL_93428.1
HL_93428.1
  • Basepair signature: cWW-R-R-cWH-R
  • History status: New id, no parents
81
216
  • HL_58223.1
HL_58223.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
91
217
  • HL_67000.1
HL_67000.1
  • Basepair signature: cWW-tSW-R
  • History status: Exact match
61
218
  • HL_95716.1
HL_95716.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
61
219
  • HL_84289.1
HL_84289.1
  • Basepair signature: cWW-cWW-R-R-R-R-R-R
  • History status: Exact match
131
220
  • HL_10378.1
HL_10378.1
  • Basepair signature: cWW-R
  • History status: Exact match
  • Name: Double 5'-stacked purine Hairpin Loop from Eukaryal LSU
71
221
  • HL_83865.1
HL_83865.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
61
222
  • HL_82622.1
HL_82622.1
  • Basepair signature: cWW-R-tHW-R-R-R-R-R-R
  • History status: New id, 1 parent
  • Name: SSU Central Pseudoknot (forms helix 2)
111
223
  • HL_60203.1
HL_60203.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
81
224
  • HL_68579.1
HL_68579.1
  • Basepair signature: cWW-cWW-R
  • History status: Exact match
81
225
  • HL_78420.1
HL_78420.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: Exact match
111
226
  • HL_01418.1
HL_01418.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
51
227
  • HL_27236.1
HL_27236.1
  • Basepair signature: cWW-cWS-R-R
  • History status: New id, no parents
91
228
  • HL_57923.1
HL_57923.1
  • Basepair signature: cWW-cWW-R-R
  • History status: Exact match
91
229
  • HL_26579.1
HL_26579.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
91
230
  • HL_93263.1
HL_93263.1
  • Basepair signature: cWW
  • History status: Exact match
91
231
  • HL_93530.1
HL_93530.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
81
232
  • HL_29196.1
HL_29196.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
81
233
  • HL_65802.1
HL_65802.1
  • Basepair signature: cWW-tSH-tHH-R-R-R-R-R
  • History status: Exact match
111
234
  • HL_63304.1
HL_63304.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
151
235
  • HL_23195.1
HL_23195.1
  • Basepair signature: cWW-cWW-cWW-R-R-R-R-R-R-R-R-R-R
  • History status: Exact match
171
236
  • HL_87223.1
HL_87223.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
81
237
  • HL_91613.1
HL_91613.1
  • Basepair signature: cWW-cWW-cWW-R-R-R
  • History status: Exact match
111
238
  • HL_25175.1
HL_25175.1
  • Basepair signature: cWW-L-R-R-cWW-R-cWW-cWW-R-R-R
  • History status: Exact match
161
239
  • HL_20028.1
HL_20028.1
  • Basepair signature: cWW-R-R-R-R-R
  • History status: Exact match
111
240
  • HL_55202.1
HL_55202.1
  • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: U2B"-U2A" binding hairpin loop
151
241
  • HL_84768.1
HL_84768.1
  • Basepair signature: cWW-R
  • History status: Exact match
71
242
  • HL_10075.1
HL_10075.1
  • Basepair signature: cWW-R-tSH-R-R
  • History status: New id, no parents
91
243
  • HL_45411.1
HL_45411.1
  • Basepair signature: cWW-tSW-R-R-R-R
  • History status: Exact match
91
244
  • HL_82243.1
HL_82243.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: Exact match
101
245
  • HL_96012.1
HL_96012.1
  • Basepair signature: cWW-R-R-R-R-R-R
  • History status: New id, no parents
101
246
  • HL_20806.1
HL_20806.1
  • Basepair signature: cWW-R-R-R-R-cHH-R-R
  • History status: Exact match
141
247
  • HL_79902.1
HL_79902.1
  • Basepair signature: cWW-tSH-tHS-R-R
  • History status: Exact match
111
248
  • HL_55272.1
HL_55272.1
  • Basepair signature: cWW-cWW-L-R-cSS-cWW
  • History status: Exact match
101
249
  • HL_93567.1
HL_93567.1
  • Basepair signature: cWW-R-R-R-R
  • History status: Exact match
71
250
  • HL_00721.1
HL_00721.1
  • Basepair signature: cWW
  • History status: Exact match
61
251
  • HL_59225.1
HL_59225.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
61
252
  • HL_38138.1
HL_38138.1
  • Basepair signature: cWW-R-R-R
  • History status: Exact match
101
253
  • HL_50018.1
HL_50018.1
  • Basepair signature: cWW-tSH-R-R-R
  • History status: New id, no parents
71
254
  • HL_44522.1
HL_44522.1
  • Basepair signature: cWW-cWS-R
  • History status: Exact match
111
255
  • HL_00090.1
HL_00090.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R
  • History status: Exact match
121
256
  • HL_69403.1
HL_69403.1
  • Basepair signature: cWW-cWW-tSH-R-R-R
  • History status: Exact match
  • Name: GNRA-like
101
257
  • HL_23080.1
HL_23080.1
  • Basepair signature: cWW-R-R-R
  • History status: New id, no parents
81
258
  • HL_77692.1
HL_77692.1
  • Basepair signature: cWW-tSH-cWS-cSH-R-R
  • History status: Exact match
  • Name: tRNA D-loop
111
259
  • HL_78507.1
HL_78507.1
  • Basepair signature: cWW-R-R
  • History status: Exact match
71
260
  • HL_57843.1
HL_57843.1
  • Basepair signature: cWW-tSW-R
  • History status: Exact match
71
261
  • HL_53015.1
HL_53015.1
  • Basepair signature: cWW-cSH-tSS-R-R
  • History status: Exact match
101
262
  • HL_49492.1
HL_49492.1
  • Basepair signature: cWW-tSH-tHW-cSH-R-R-R-R-R-R-R
  • History status: Exact match
  • Name: Forms 7-BP PseudoKnot. Has embedded sarcin-like motif
151
263
  • HL_65071.1
HL_65071.1
  • Basepair signature: cWW-R
  • History status: Exact match
61
264
  • HL_99584.1
HL_99584.1
  • Basepair signature: cWW-R
  • History status: Exact match
51



Exact match 181; Updated, 1 parent 41; New id, no parents 16; New id, 1 parent 10; New id, 2 parents 12; Updated, 2 parents 4;