1IBM | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_1IBM_001 ➜	1/A/12:22	NA	NA
2	HL_1IBM_003 ➜	1/A/158:163	NA	NA
3	HL_1IBM_004 ➜	1/A/190B:190G	NA	NA
4	HL_1IBM_005 ➜	1/A/201:216	NA	NA
5	HL_1IBM_006 ➜	1/A/259:267	NA	NA
6	HL_1IBM_007 ➜	1/A/296:301	NA	NA
7	HL_1IBM_008 ➜	1/A/320:333	NA	NA
8	HL_1IBM_010 ➜	1/A/379:384	NA	NA
9	HL_1IBM_011 ➜	1/A/419:424	NA	NA
10	HL_1IBM_012 ➜	1/A/458:474	NA	NA
11	HL_1IBM_013 ➜	1/A/522:527	NA	NA
12	HL_1IBM_014 ➜	1/A/617:623	NA	NA
13	HL_1IBM_015 ➜	1/A/689:698	NA	NA
14	HL_1IBM_016 ➜	1/A/726:731	NA	NA
15	HL_1IBM_017 ➜	1/A/786:796	NA	NA
16	HL_1IBM_018 ➜	1/A/838:848	NA	NA
17	HL_1IBM_019 ➜	1/A/862:867	NA	NA
18	HL_1IBM_020 ➜	1/A/897:902	NA	NA
19	HL_1IBM_021 ➜	1/A/963:972	NA	NA
20	HL_1IBM_022 ➜	1/A/1012:1017	NA	NA
21	HL_1IBM_023 ➜	1/A/1076:1081	NA	NA
22	HL_1IBM_024 ➜	1/A/1089:1096	NA	NA
23	HL_1IBM_025 ➜	1/A/1134:1140	NA	NA
24	HL_1IBM_026 ➜	1/A/1165:1171	NA	NA
25	HL_1IBM_027 ➜	1/A/1265:1270	NA	NA
26	HL_1IBM_028 ➜	1/A/1314:1323	NA	NA
27	HL_1IBM_030 ➜	1/A/1449:1454	NA	NA
28	HL_1IBM_031 ➜	1/A/1515:1520	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_1IBM_002 ➜	missing nts	NA
2	HL_1IBM_009 ➜	missing nts	NA
3	HL_1IBM_029 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_1IBM_002 ➜	1/A/44:45,1/A/396:398	NA	NA
2	IL_1IBM_003 ➜	1/A/47:52,1/A/359:361	NA	NA
3	IL_1IBM_004 ➜	1/A/54:56,1/A/356:357	NA	NA
4	IL_1IBM_005 ➜	1/A/63:66,1/A/103:104	NA	NA
5	IL_1IBM_006 ➜	1/A/67:69,1/A/99:102	NA	NA
6	IL_1IBM_007 ➜	1/A/129:131,1/A/231:232	NA	NA
7	IL_1IBM_008 ➜	1/A/132:136,1/A/227:230	NA	NA
8	IL_1IBM_009 ➜	1/A/148:153,1/A/168:174	NA	NA
9	IL_1IBM_010 ➜	1/A/186:188,1/A/190K:191	NA	NA
10	IL_1IBM_011 ➜	1/A/242:247,1/A/277:284	NA	NA
11	IL_1IBM_012 ➜	1/A/249:252,1/A/274:275	NA	NA
12	IL_1IBM_013 ➜	1/A/292:293,1/A/304:308	NA	NA
13	IL_1IBM_014 ➜	1/A/367:369,1/A/392:393	NA	NA
14	IL_1IBM_017 ➜	1/A/409:416,1/A/427:433	NA	NA
15	IL_1IBM_018 ➜	1/A/446:450,1/A/483:488	NA	NA
16	IL_1IBM_019 ➜	1/A/450:455,1/A/477:483	NA	NA
17	IL_1IBM_020 ➜	1/A/504:511,1/A/540:541	NA	NA
18	IL_1IBM_021 ➜	1/A/515:521,1/A/528:536	NA	NA
19	IL_1IBM_022 ➜	1/A/569:575,1/A/880:881	NA	NA
20	IL_1IBM_023 ➜	1/A/580:584,1/A/757:761	NA	NA
21	IL_1IBM_024 ➜	1/A/594:596,1/A/644:645	NA	NA
22	IL_1IBM_025 ➜	1/A/597:598,1/A/640:643	NA	NA
23	IL_1IBM_026 ➜	1/A/605:612,1/A/628:633	NA	NA
24	IL_1IBM_027 ➜	1/A/654:655,1/A/751:754	NA	NA
25	IL_1IBM_028 ➜	1/A/657:658,1/A/747:749	NA	NA
26	IL_1IBM_029 ➜	1/A/662:666,1/A/740:743	NA	NA
27	IL_1IBM_030 ➜	1/A/673:678,1/A/712:717	NA	NA
28	IL_1IBM_031 ➜	1/A/683:688,1/A/699:707	NA	NA
29	IL_1IBM_032 ➜	1/A/774:778,1/A/804:805	NA	NA
30	IL_1IBM_033 ➜	1/A/779:783,1/A/799:803	NA	NA
31	IL_1IBM_034 ➜	1/A/887:894,1/A/905:910	NA	NA
32	IL_1IBM_035 ➜	1/A/922:923,1/A/1393:1395	NA	NA
33	IL_1IBM_036 ➜	1/A/925:927,1/A/1390:1391	NA	NA
34	IL_1IBM_037 ➜	1/A/933:935,1/A/1380:1384	NA	NA
35	IL_1IBM_038 ➜	1/A/953:954,1/A/1226:1228	NA	NA
36	IL_1IBM_039 ➜	1/A/993:998,1/A/1043:1045	NA	NA
37	IL_1IBM_042 ➜	1/A/1048:1050,1/A/1208:1209	NA	NA
38	IL_1IBM_043 ➜	1/A/1052:1056,1/A/1204:1206	NA	NA
39	IL_1IBM_044 ➜	1/A/1057:1059,1/A/1198:1203	NA	NA
40	IL_1IBM_045 ➜	1/A/1060:1061,1/A/1195:1197	NA	NA
41	IL_1IBM_046 ➜	1/A/1061:1063,1/A/1193:1195	NA	NA
42	IL_1IBM_048 ➜	1/A/1124:1128,1/A/1143:1149	NA	NA
43	IL_1IBM_049 ➜	1/A/1128:1132,1/A/1142:1143	NA	NA
44	IL_1IBM_050 ➜	1/A/1158:1161,1/A/1175:1181	NA	NA
45	IL_1IBM_051 ➜	1/A/1247:1253,1/A/1284:1290	NA	NA
46	IL_1IBM_052 ➜	1/A/1255:1259,1/A/1276:1282	NA	NA
47	IL_1IBM_053 ➜	1/A/1259:1260,1/A/1274:1276	NA	NA
48	IL_1IBM_054 ➜	1/A/1260:1262,1/A/1273:1274	NA	NA
49	IL_1IBM_055 ➜	1/A/1303:1308,1/A/1329:1334	NA	NA
50	IL_1IBM_056 ➜	1/A/1399:1401,1/A/1501:1504	NA	NA
51	IL_1IBM_057 ➜	1/A/1401:1404,1/A/1497:1501	NA	NA
52	IL_1IBM_058 ➜	1/A/1405:1407,1/A/1494:1496	NA	NA
53	IL_1IBM_059 ➜	1/A/1407:1409,1/A/1491:1494	NA	NA
54	IL_1IBM_060 ➜	1/A/1412:1414,1/A/1486:1488	NA	NA
55	IL_1IBM_061 ➜	1/A/1416:1419,1/A/1481:1484	NA	NA
56	IL_1IBM_062 ➜	1/A/1431:1435,1/A/1466:1469	NA	NA
57	IL_1IBM_063 ➜	1/A/1435:1437,1/A/1464:1466	NA	NA
58	IL_1IBM_064 ➜	1/A/1440:1447,1/A/1459:1461	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_1IBM_001 ➜	all high RSRZ	NA
2	IL_1IBM_015 ➜	all high RSRZ	NA
3	IL_1IBM_016 ➜	all high RSRZ	NA
4	IL_1IBM_040 ➜	missing nts	NA
5	IL_1IBM_041 ➜	missing nts	NA
6	IL_1IBM_047 ➜	complementary	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_1IBM_001 ➜	1/A/826:829,1/A/857:861,1/A/868:874	NA	NA
2	J3_1IBM_002 ➜	1/A/936:939,1/A/1344:1350,1/A/1372:1379	NA	NA
3	J3_1IBM_003 ➜	1/A/943:946,1/A/1235:1237,1/A/1337:1340	NA	NA
4	J3_1IBM_004 ➜	1/A/955:962,1/A/973:984,1/A/1221:1225	NA	NA
5	J3_1IBM_005 ➜	1/A/990:993,1/A/1045:1047,1/A/1210:1215	NA	NA
6	J3_1IBM_006 ➜	1/A/1063:1068,1/A/1107:1113,1/A/1187:1193	NA	NA
7	J3_1IBM_007 ➜	1/A/1116:1118,1/A/1155:1158,1/A/1181:1184	NA	NA
8	J3_1IBM_008 ➜	1/A/1237:1241,1/A/1296:1303,1/A/1334:1337	NA	NA

Problematic loops

No problematic loops

1IBM Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops