4V6V Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V6V_001 | 1/A2/25:29 | No text annotation | ||
| HL_4V6V_002 | 1/A3/13:23 | No text annotation | homologous HL_3WFS_001 NA | |
| HL_4V6V_003 | 1/A3/32:40 | tRNA anticodon loop | homologous HL_6UFG_007 HL_06059.5 | |
| HL_4V6V_004 | 1/A3/54:62 | T-loop with 2 stacked bulged bases | homologous HL_1FIR_003 HL_28252.6 | |
| HL_4V6V_108 | 1/AA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4V6V_006 | 1/AA/83:86 | No text annotation | geometric HL_7RQB_009 NA | |
| HL_4V6V_007 | 1/AA/158:163 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_4V6V_008 | 1/AA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_4V6V_009 | 1/AA/207:212 | UNCG | homologous HL_5J7L_005 HL_34617.5 | |
| HL_4V6V_010 | 1/AA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_4V6V_011 | 1/AA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_4V6V_012 | 1/AA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V6V_013 | 1/AA/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4V6V_014 | 1/AA/379:384 | GNRA variation | geometric HL_5J7L_180 HL_37824.7 | |
| HL_4V6V_015 | 1/AA/419:424 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_4V6V_016 | 1/AA/462:470 | No text annotation | ||
| HL_4V6V_111 | 1/AA/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.7 | |
| HL_4V6V_018 | 1/AA/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_4V6V_019 | 1/AA/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4V6V_020 | 1/AA/726:731 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_4V6V_021 | 1/AA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V6V_022 | 1/AA/840:846 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V6V_023 | 1/AA/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_4V6V_024 | 1/AA/897:902 | GNRA | homologous HL_6CZR_091 NA | |
| HL_4V6V_025 | 1/AA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V6V_026 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4V6V_027 | 1/AA/1028:1033 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_4V6V_028 | 1/AA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_4V6V_029 | 1/AA/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_4V6V_030 | 1/AA/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_4V6V_031 | 1/AA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4V6V_032 | 1/AA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_4V6V_033 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_4V6V_034 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V6V_035 | 1/AA/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4V6V_036 | 1/AA/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_4V6V_037 | 1/BA/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_93438.2 | |
| HL_4V6V_038 | 1/BA/86:96 | No text annotation | ||
| HL_4V6V_039 | 1/BA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4V6V_040 | 1/BA/137:142 | No text annotation | geometric HL_2IZN_001 HL_48417.5 | |
| HL_4V6V_041 | 1/BA/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_4V6V_042 | 1/BA/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_4V6V_043 | 1/BA/225:230 | No text annotation | homologous HL_4WF9_007 HL_53890.2 | |
| HL_4V6V_044 | 1/BA/246:252 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
| HL_4V6V_045 | 1/BA/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_4V6V_046 | 1/BA/319:323 | No text annotation | homologous HL_4WF9_011 HL_75660.5 | |
| HL_4V6V_047 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4V6V_048 | 1/BA/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_4V6V_049 | 1/BA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V6V_050 | 1/BA/462:467 | GNRA | homologous HL_7A0S_015 HL_37824.7 | |
| HL_4V6V_051 | 1/BA/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_4V6V_052 | 1/BA/543:550 | No text annotation | ||
| HL_4V6V_053 | 1/BA/564:577 | No text annotation | ||
| HL_4V6V_054 | 1/BA/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_4V6V_055 | 1/BA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V6V_056 | 1/BA/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_4V6V_057 | 1/BA/712:719 | No text annotation | ||
| HL_4V6V_058 | 1/BA/744:753 | No text annotation | homologous HL_5J7L_155 HL_88205.2 | |
| HL_4V6V_059 | 1/BA/779:785 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_4V6V_060 | 1/BA/826:831 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
| HL_4V6V_061 | 1/BA/885:891 | No text annotation | ||
| HL_4V6V_109 | 1/BA/955:962 | GNRA | homologous HL_5J7L_211 HL_37824.7 | |
| HL_4V6V_063 | 1/BA/978:985 | No text annotation | homologous HL_4WF9_028 HL_42998.2 | |
| HL_4V6V_064 | 1/BA/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
| HL_4V6V_065 | 1/BA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_4V6V_066 | 1/BA/1172:1177 | GNRA related | geometric HL_8G9Z_003 HL_04783.2 | |
| HL_4V6V_067 | 1/BA/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
| HL_4V6V_068 | 1/BA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.6 | |
| HL_4V6V_069 | 1/BA/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V6V_070 | 1/BA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4V6V_071 | 1/BA/1389:1398 | No text annotation | homologous HL_4WF9_035 HL_81545.2 | |
| HL_4V6V_072 | 1/BA/1450:1461 | No text annotation | ||
| HL_4V6V_073 | 1/BA/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_4V6V_074 | 1/BA/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_4V6V_075 | 1/BA/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4V6V_076 | 1/BA/1612:1619 | No text annotation | homologous HL_5J7L_173 HL_89567.2 | |
| HL_4V6V_077 | 1/BA/1629:1637 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
| HL_4V6V_078 | 1/BA/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_4V6V_079 | 1/BA/1728:1731 | No text annotation | homologous HL_5J7L_176 HL_32346.3 | |
| HL_4V6V_080 | 1/BA/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_4V6V_081 | 1/BA/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_4V6V_082 | 1/BA/1806:1811 | No text annotation | homologous HL_4WF9_044 NA | |
| HL_4V6V_083 | 1/BA/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_4V6V_084 | 1/BA/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_4V6V_085 | 1/BA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V6V_086 | 1/BA/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
| HL_4V6V_087 | 1/BA/2143:2148 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_4V6V_088 | 1/BA/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_4V6V_089 | 1/BA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V6V_090 | 1/BA/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
| HL_4V6V_091 | 1/BA/2304:2313 | No text annotation | ||
| HL_4V6V_092 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_4V6V_093 | 1/BA/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_4V6V_094 | 1/BA/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.7 | |
| HL_4V6V_095 | 1/BA/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_4V6V_096 | 1/BA/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_4V6V_097 | 1/BA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V6V_098 | 1/BA/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_4V6V_099 | 1/BA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V6V_100 | 1/BA/2658:2663 | No text annotation | geometric HL_4V88_198 NA | |
| HL_4V6V_101 | 1/BA/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_4V6V_102 | 1/BA/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_4V6V_103 | 1/BA/2796:2800 | No text annotation | geometric HL_6U8D_003 HL_32346.3 | |
| HL_4V6V_104 | 1/BA/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_4V6V_105 | 1/BA/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_4V6V_110 | 1/Ba/34:48 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_4V6V_106 | 1/Ba/38:44 | No text annotation | geometric HL_1MJI_002 HL_47787.2 | |
| HL_4V6V_107 | 1/Ba/85:91 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6V_005 | No text annotation | ||
| HL_4V6V_017 | No text annotation | ||
| HL_4V6V_062 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V6V_001 | 1/AA/30:33, 1/AA/551:553 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_4V6V_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.5 | |
| IL_4V6V_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_4V6V_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_5J7L_004 IL_51454.2 | |
| IL_4V6V_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_4V6V_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_4V6V_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_4V6V_008 | 1/AA/75:76, 1/AA/93:95 | Major groove intercalation | geometric IL_7A0S_099 IL_00225.13 | |
| IL_4V6V_009 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_4V6V_010 | 1/AA/132:136, 1/AA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V6V_011 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.5 | |
| IL_4V6V_012 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_4V6V_013 | 1/AA/203:206, 1/AA/213:214 | No text annotation | ||
| IL_4V6V_014 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V6V_204 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V6V_016 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4V6V_017 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4V6V_018 | 1/AA/371:375, 1/AA/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4V6V_019 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_4V6V_020 | 1/AA/409:416, 1/AA/427:433 | No text annotation | ||
| IL_4V6V_021 | 1/AA/440:442, 1/AA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_4V6V_022 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_4V6V_023 | 1/AA/450:455, 1/AA/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V6V_024 | 1/AA/457:459, 1/AA/472:475 | No text annotation | geometric IL_4V9F_053 IL_09990.4 | |
| IL_4V6V_025 | 1/AA/460:462, 1/AA/470:471 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_4V6V_026 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_4V6V_027 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_4V6V_028 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4V6V_029 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_4V6V_030 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_4V6V_031 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_4V6V_032 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4V6V_033 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 IL_50694.7 | |
| IL_4V6V_034 | 1/AA/659:660, 1/AA/745:747 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_4V6V_035 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_4V6V_036 | 1/AA/673:678, 1/AA/712:717 | No text annotation | geometric IL_6CZR_142 NA | |
| IL_4V6V_037 | 1/AA/684:688, 1/AA/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_4V6V_038 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4V6V_039 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_4V6V_040 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4V6V_041 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.5 | |
| IL_4V6V_042 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_4V6V_043 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V6V_044 | 1/AA/953:954, 1/AA/1226:1228 | Single bulged A | geometric IL_8UO6_001 IL_31462.5 | |
| IL_4V6V_187 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_4V6V_046 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_4V6V_047 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_4V6V_049 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V6V_050 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4V6V_051 | 1/AA/1060:1063, 1/AA/1193:1197 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 IL_85033.2 | |
| IL_4V6V_052 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_4V6V_053 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_4V6V_054 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_4V6V_055 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_4V6V_056 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation | ||
| IL_4V6V_057 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_4V6V_058 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | geometric IL_4V88_462 NA | |
| IL_4V6V_059 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_4V6V_060 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V6V_188 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | homologous IL_4LFB_069 IL_87907.2 | |
| IL_4V6V_189 | 1/AA/1407:1409, 1/AA/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_4V6V_190 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V6V_063 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V6V_064 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_4V6V_065 | 1/AA/1440:1442, 1/AA/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.5 | |
| IL_4V6V_066 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_4V6V_068 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_4V6V_069 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V6V_070 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.2 | |
| IL_4V6V_071 | 1/BA/81:85, 1/BA/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_4V6V_072 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_4V6V_073 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4V6V_074 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_4V6V_075 | 1/BA/269:271, 1/BA/366:370 | No text annotation | ||
| IL_4V6V_076 | 1/BA/274:281, 1/BA/359:363 | No text annotation | ||
| IL_4V6V_077 | 1/BA/293:295, 1/BA/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_4V6V_078 | 1/BA/481:484, 1/BA/496:509 | No text annotation | geometric IL_7A0S_009 IL_81516.2 | |
| IL_4V6V_079 | 1/BA/536:539, 1/BA/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_4V6V_080 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_4V6V_081 | 1/BA/672:674, 1/BA/806:808 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_87907.2 | |
| IL_4V6V_082 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_4V6V_192 | 1/BA/694:696, 1/BA/766:768 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_4V6V_083 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4V6V_084 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | geometric IL_7A0S_017 IL_00225.13 | |
| IL_4V6V_085 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4V6V_086 | 1/BA/738:740, 1/BA/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_4V6V_087 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | geometric IL_7A0S_021 IL_06549.2 | |
| IL_4V6V_088 | 1/BA/843:845, 1/BA/934:935 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_4V6V_089 | 1/BA/845:848, 1/BA/930:934 | No text annotation | ||
| IL_4V6V_205 | 1/BA/850:851, 1/BA/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_4V6V_091 | 1/BA/856:862, 1/BA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_4V6V_092 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform | homologous IL_4WF9_032 IL_51454.2 | |
| IL_4V6V_093 | 1/BA/864:868, 1/BA/909:912 | C-loop | homologous IL_4WF9_033 IL_26222.2 | |
| IL_4V6V_094 | 1/BA/869:872, 1/BA/905:908 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_4V6V_095 | 1/BA/875:879, 1/BA/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_4V6V_096 | 1/BA/879:881, 1/BA/895:898 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_4V6V_193 | 1/BA/879:885, 1/BA/891:898 | No text annotation | ||
| IL_4V6V_097 | 1/BA/881:885, 1/BA/891:895 | No text annotation | ||
| IL_4V6V_098 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C | homologous IL_7A0S_032 IL_61258.15 | |
| IL_4V6V_099 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_4V6V_100 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_4V6V_101 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_4V6V_102 | 1/BA/1018:1024, 1/BA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4V6V_103 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_4V6V_104 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4V6V_105 | 1/BA/1038:1041, 1/BA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_4V6V_106 | 1/BA/1043:1051, 1/BA/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4V6V_107 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_4V6V_108 | 1/BA/1087:1090, 1/BA/1101:1102 | Major groove platform | geometric IL_4V9F_044 IL_48076.6 | |
| IL_4V6V_109 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V6V_110 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | ||
| IL_4V6V_111 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_4V6V_112 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_4V6V_113 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 IL_50694.7 | |
| IL_4V6V_114 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4V6V_115 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_4V6V_116 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_4V6V_117 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_4V6V_118 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V6V_119 | 1/BA/1432:1435, 1/BA/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_4V6V_120 | 1/BA/1437:1440, 1/BA/1551:1555 | Other IL | geometric IL_4WF9_054 IL_99646.2 | |
| IL_4V6V_121 | 1/BA/1468:1471, 1/BA/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_4V6V_122 | 1/BA/1474:1478, 1/BA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_4V6V_123 | 1/BA/1481:1482, 1/BA/1507:1510 | No text annotation | ||
| IL_4V6V_124 | 1/BA/1489:1491, 1/BA/1499:1500 | No text annotation | ||
| IL_4V6V_125 | 1/BA/1526:1529, 1/BA/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_4V6V_126 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V6V_127 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
| IL_4V6V_128 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4V6V_194 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4V6V_129 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4V6V_130 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_4V6V_131 | 1/BA/1712:1718, 1/BA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_4V6V_132 | 1/BA/1720:1724, 1/BA/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_4V6V_133 | 1/BA/1727:1728, 1/BA/1731:1733 | Single bulged C | homologous IL_5J7L_311 IL_61258.15 | |
| IL_4V6V_134 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_4WF9_068 IL_31462.5 | |
| IL_4V6V_135 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V6V_136 | 1/BA/1837:1840, 1/BA/1902:1903 | No text annotation | homologous IL_4WF9_070 NA | |
| IL_4V6V_137 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_4V6V_138 | 1/BA/1846:1849, 1/BA/1893:1894 | Major groove minor groove platform; mini C-loop | geometric IL_4V9F_068 IL_68140.4 | |
| IL_4V6V_195 | 1/BA/1849:1860, 1/BA/1882:1893 | No text annotation | ||
| IL_4V6V_139 | 1/BA/1864:1867, 1/BA/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_4V6V_140 | 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases | geometric IL_6IV9_001 IL_82107.4 | |
| IL_4V6V_141 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_4V6V_142 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V6V_143 | 1/BA/2054:2056, 1/BA/2612:2615 | Major groove platform with intercalation | geometric IL_5TBW_092 NA | |
| IL_4V6V_196 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | homologous IL_9DFE_080 IL_89505.4 | |
| IL_4V6V_197 | 1/BA/2069:2071, 1/BA/2438:2442 | No text annotation | ||
| IL_4V6V_146 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_4V6V_147 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V6V_148 | 1/BA/2103:2105, 1/BA/2184:2186 | Isolated non-canonical cWW pair | geometric IL_4V88_444 NA | |
| IL_4V6V_149 | 1/BA/2108:2120, 1/BA/2177:2181 | No text annotation | ||
| IL_4V6V_198 | 1/BA/2120:2122, 1/BA/2176:2177 | Single stack bend | geometric IL_7MLX_001 IL_90729.1 | |
| IL_4V6V_151 | 1/BA/2124:2128, 1/BA/2160:2174 | No text annotation | ||
| IL_4V6V_152 | 1/BA/2128:2136, 1/BA/2155:2160 | No text annotation | ||
| IL_4V6V_153 | 1/BA/2202:2204, 1/BA/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_4V6V_154 | 1/BA/2302:2304, 1/BA/2313:2314 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_4V6V_155 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V6V_156 | 1/BA/2401:2403, 1/BA/2414:2415 | Single bulged U | geometric IL_7PMM_002 IL_89505.4 | |
| IL_4V6V_199 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend | homologous IL_9DFE_091 IL_26793.1 | |
| IL_4V6V_200 | 1/BA/2454:2455, 1/BA/2496:2498 | Multiple bulged bases | geometric IL_3MXH_004 IL_82107.4 | |
| IL_4V6V_201 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform | homologous IL_5J7L_393 IL_07039.3 | |
| IL_4V6V_159 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 IL_51387.2 | |
| IL_4V6V_160 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V6V_202 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_5J7L_394 IL_07039.3 | |
| IL_4V6V_162 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V6V_163 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_4V6V_164 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_4V6V_166 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V6V_167 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.3 | |
| IL_4V6V_168 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_4V6V_169 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_4V6V_170 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_4V6V_171 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_4V6V_172 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_4V6V_174 | 1/BA/2806:2811, 1/BA/2889:2892 | No text annotation | geometric IL_5J7L_351 IL_29471.1 | |
| IL_4V6V_175 | 1/BA/2838:2839, 1/BA/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_4V6V_176 | 1/BA/2843:2846, 1/BA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_4V6V_203 | 1/BA/2847:2852, 1/BA/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_70411.2 | |
| IL_4V6V_179 | 1/Ba/17:18, 1/Ba/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.5 | |
| IL_4V6V_181 | 1/Ba/23:28, 1/Ba/56:60 | No text annotation | geometric IL_7A0S_103 IL_18472.4 | |
| IL_4V6V_182 | 1/Ba/30:31, 1/Ba/51:54 | No text annotation | ||
| IL_4V6V_183 | 1/Ba/34:38, 1/Ba/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.11 | |
| IL_4V6V_184 | 1/Ba/71:79, 1/Ba/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6V_015 | No text annotation | ||
| IL_4V6V_185 | No text annotation | ||
| IL_4V6V_186 | Isolated non-canonical cWW pair | ||
| IL_4V6V_045 | No text annotation | ||
| IL_4V6V_048 | Isolated non-canonical cWW pair | ||
| IL_4V6V_061 | No text annotation | ||
| IL_4V6V_062 | Tandem non-canonical cWW pairs | ||
| IL_4V6V_067 | tSH-tHW | ||
| IL_4V6V_191 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4V6V_090 | No text annotation | ||
| IL_4V6V_144 | No text annotation | ||
| IL_4V6V_145 | No text annotation | ||
| IL_4V6V_150 | Other IL | ||
| IL_4V6V_157 | No text annotation | ||
| IL_4V6V_158 | Decoding loop related | ||
| IL_4V6V_161 | No text annotation | ||
| IL_4V6V_165 | No text annotation | ||
| IL_4V6V_173 | Isolated cWS basepair | ||
| IL_4V6V_177 | No text annotation | ||
| IL_4V6V_178 | Not an internal loop | ||
| IL_4V6V_180 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V6V_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_4V6V_028 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4V6V_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_4V6V_029 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_4V6V_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_4V6V_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_4V6V_005 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V6V_006 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_4V6V_007 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_4V6V_008 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4V6V_030 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4V6V_009 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation | ||
| J3_4V6V_010 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_4V6V_011 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V6V_012 | 1/AA/1116:1118, 1/AA/1155:1158, 1/AA/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_4V6V_031 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_6CZR_025 NA | |
| J3_4V6V_013 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V6V_014 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_4V6V_032 | 1/BA/30:31, 1/BA/474:484, 1/BA/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4V6V_015 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4V6V_016 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_4V6V_033 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_4V6V_017 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_4V6V_018 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V6V_019 | 1/BA/1055:1057, 1/BA/1081:1087, 1/BA/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_4V6V_020 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_4V6V_021 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_4V6V_034 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation | ||
| J3_4V6V_035 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_4V6V_022 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_4V6V_036 | 1/BA/2282:2284, 1/BA/2384:2395, 1/BA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_4V6V_023 | 1/BA/2295:2299, 1/BA/2317:2323, 1/BA/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_4V6V_024 | 1/BA/2516:2520, 1/BA/2545:2547, 1/BA/2561:2568 | No text annotation | ||
| J3_4V6V_025 | 1/BA/2789:2791, 1/BA/2805:2806, 1/BA/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_4V6V_026 | 1/BA/2812:2815, 1/BA/2831:2836, 1/BA/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_4V6V_027 | 1/Ba/10:16, 1/Ba/68:70, 1/Ba/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J4_4V6V_001 | 1/A3/7:10, 1/A3/26:28, 1/A3/44:50, 1/A3/66:67 | No text annotation | homologous J4_7EQJ_002 J4_70449.27 | |
| J4_4V6V_002 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_4V6V_003 | 1/AA/142:144, 1/AA/178:184, 1/AA/193:198, 1/AA/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_4V6V_004 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4V6V_005 | 1/BA/45:46, 1/BA/179:183, 1/BA/214:218, 1/BA/431:433 | No text annotation | ||
| J4_4V6V_006 | 1/BA/218:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:431 | No text annotation | ||
| J4_4V6V_007 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_4V6V_008 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_4V6V_009 | 1/BA/601:604, 1/BA/624:628, 1/BA/635:638, 1/BA/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4V6V_010 | 1/BA/1270:1277, 1/BA/1293:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | ||
| J4_4V6V_011 | 1/BA/1310:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_4V6V_012 | 1/BA/1313:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_4V6V_013 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_4V6V_018 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_7A0S_008 J4_61477.5 | |
| J4_4V6V_015 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V6V_016 | 1/BA/2285:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_4V6V_017 | 1/BA/2643:2646, 1/BA/2674:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_4V6V_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:440, 1/AA/497:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_4V6V_002 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_4V6V_003 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_4V6V_004 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4V6V_005 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V6V_006 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1196, 1/BA/1250:1256 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
| J5_4V6V_007 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_4V6V_010 | 1/BA/2057:2064, 1/BA/2446:2453, 1/BA/2500:2507, 1/BA/2582:2588, 1/BA/2606:2611 | No text annotation | ||
| J5_4V6V_009 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J6_4V6V_001 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2284, 1/BA/2384:2395, 1/BA/2421:2435 | No text annotation | ||
| J7_4V6V_001 | 1/BA/8:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2789, 1/BA/2894:2895 | No text annotation | ||
| J7_4V6V_002 | 1/BA/817:822, 1/BA/835:838, 1/BA/940:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_4V6V_014 | No text annotation | ||
| J5_4V6V_008 | No text annotation |
Coloring options: