RNA 3D Hub //

8E47 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8E47_0011/I/59:68No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_8E47_0021/I/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_8E47_0031/I/123:128No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_8E47_0041/I/136:143No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_8E47_0051/I/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_8E47_0061/I/194:201No text annotation
geometric
HL_7RQB_006
NA
HL_8E47_0071/I/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_8E47_0081/I/246:252No text annotation
homologous
HL_7RQB_008
NA
HL_8E47_0091/I/305:312T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_01609.3
HL_8E47_0101/I/319:323No text annotation
homologous
HL_7A0S_011
HL_75660.5
HL_8E47_0111/I/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_8E47_0121/I/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_8E47_0131/I/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_8E47_0141/I/462:467GNRA
homologous
HL_4WF9_015
HL_37824.7
HL_8E47_0151/I/487:493GNRA
homologous
HL_5J7L_148
HL_37824.7
HL_8E47_0161/I/543:550No text annotation
homologous
HL_7RQB_017
NA
HL_8E47_0171/I/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_28252.6
HL_8E47_0181/I/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_8E47_0191/I/629:634GNRA
homologous
HL_5J7L_152
HL_37824.7
HL_8E47_0791/I/641:647No text annotation
homologous
HL_5J7L_153
HL_13529.1
HL_8E47_0211/I/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_8E47_0221/I/744:753No text annotation
homologous
HL_5J7L_155
HL_88205.2
HL_8E47_0231/I/779:785No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_8E47_0241/I/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_8E47_0731/I/955:962GNRA
homologous
HL_5J7L_211
HL_37824.7
HL_8E47_0271/I/978:985No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_8E47_0281/I/1064:1074No text annotation
homologous
HL_5J7L_161
HL_19210.3
HL_8E47_0291/I/1091:1100No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_8E47_0301/I/1168:1181No text annotation
HL_8E47_0311/I/1222:1227GNRA
homologous
HL_7A0S_031
HL_37824.7
HL_8E47_0321/I/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.6
HL_8E47_0331/I/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_8E47_0341/I/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_8E47_0351/I/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_8E47_0801/I/1450:1461No text annotation
HL_8E47_0361/I/1451:1459Mini UNCG with extended bulge
geometric
HL_5J7L_169
HL_22622.1
HL_8E47_0371/I/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_8E47_0381/I/1533:1538Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_8E47_0391/I/1565:1568Mini UNCG
homologous
HL_5J7L_172
HL_48778.2
HL_8E47_0401/I/1612:1619No text annotation
homologous
HL_4WF9_038
HL_89567.2
HL_8E47_0411/I/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.7
HL_8E47_0421/I/1691:1696UNCG
geometric
HL_4LFB_009
HL_34617.5
HL_8E47_0431/I/1727:1733No text annotation
geometric
HL_361D_002
HL_13963.3
HL_8E47_0441/I/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_8E47_0451/I/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_8E47_0461/I/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_8E47_0471/I/1868:1873GNRA
geometric
HL_6CZR_078
NA
HL_8E47_0481/I/1909:1921No text annotation
homologous
HL_7RQB_048
NA
HL_8E47_0491/I/1949:1957No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_8E47_0501/I/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.2
HL_8E47_0761/I/2101:2188No text annotation
HL_8E47_0511/I/2107:2182No text annotation
HL_8E47_0521/I/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_8E47_0531/I/2248:2256No text annotation
homologous
HL_7A0S_052
HL_85367.2
HL_8E47_0541/I/2264:2276No text annotation
homologous
HL_5J7L_187
HL_91939.2
HL_8E47_0551/I/2303:2313No text annotation
homologous
HL_7RQB_055
NA
HL_8E47_0561/I/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_8E47_0571/I/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.7
HL_8E47_0581/I/2372:2381No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_8E47_0591/I/2404:2413No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_8E47_0601/I/2471:2479No text annotation
homologous
HL_4WF9_056
HL_32735.2
HL_8E47_0611/I/2528:2535No text annotation
homologous
HL_5J7L_194
HL_31585.3
HL_8E47_0621/I/2551:2557No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_8E47_0631/I/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_8E47_0641/I/2658:2663GNRA
homologous
HL_5J7L_197
HL_37824.7
HL_8E47_0651/I/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_8E47_0661/I/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_8E47_0671/I/2795:2801Other HL
homologous
HL_5J7L_200
HL_08100.1
HL_8E47_0681/I/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_8E47_0691/I/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.7
HL_8E47_0781/J/34:48No text annotation
homologous
HL_5J7L_215
HL_97756.2
HL_8E47_0701/J/38:44No text annotation
geometric
HL_7RQB_070
NA
HL_8E47_0711/J/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2

Problematic loops

#loop idProblemSequence
HL_8E47_072No text annotation
HL_8E47_020No text annotation
HL_8E47_025No text annotation
HL_8E47_026No text annotation
HL_8E47_074No text annotation
HL_8E47_075No text annotation
HL_8E47_077tRNA anticodon loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8E47_0011/I/24:30,
1/I/510:516		Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
IL_04021.2
IL_8E47_0021/I/36:37,
1/I/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_8E47_0031/I/43:44,
1/I/434:436		Minor groove platform
homologous
IL_5J7L_247
IL_51454.2
IL_8E47_0041/I/81:85,
1/I/97:105		No text annotation
homologous
IL_5J7L_248
IL_37015.1
IL_8E47_0051/I/183:184,
1/I/212:214		Single stack bend
homologous
IL_5J7L_249
IL_90729.1
IL_8E47_0061/I/188:194,
1/I/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_250
IL_04346.10
IL_8E47_0071/I/239:245,
1/I/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_8E47_0081/I/269:271,
1/I/366:370		No text annotation
geometric
IL_5J7L_252
IL_47972.1
IL_8E47_1391/I/274:281,
1/I/359:363		No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_8E47_0121/I/293:295,
1/I/343:347		No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_8E47_0131/I/481:484,
1/I/496:509		No text annotation
homologous
IL_7RQB_014
NA
IL_8E47_0141/I/536:539,
1/I/554:557		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_8E47_0151/I/564:566,
1/I/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
IL_07785.1
IL_8E47_0161/I/606:610,
1/I/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_8E47_0171/I/672:674,
1/I/806:808		No text annotation
geometric
IL_7RQB_017
NA
IL_8E47_0181/I/674:678,
1/I/799:806		tHW-tHW cross-strand stack
homologous
IL_5J7L_260
IL_54041.2
IL_8E47_0191/I/697:698,
1/I/763:765		Single bulged A
geometric
IL_5J7L_261
IL_31462.5
IL_8E47_0201/I/702:703,
1/I/728:730		Single bulged G
geometric
IL_7RQB_020
NA
IL_8E47_0211/I/703:707,
1/I/724:728		Triple sheared
homologous
IL_4WF9_024
IL_50730.2
IL_8E47_0231/I/738:740,
1/I/757:758		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_8E47_0241/I/775:777,
1/I/787:791		Multiple bulged bases
homologous
IL_5J7L_265
IL_06549.2
IL_8E47_0251/I/837:838,
1/I/940:942		Single stack bend
homologous
IL_5J7L_266
IL_90729.1
IL_8E47_0261/I/844:847,
1/I/933:934		Other IL
geometric
IL_5J7L_267
IL_90729.1
IL_8E47_1401/I/844:848,
1/I/930:934		No text annotation
homologous
IL_5J7L_399
IL_96236.1
IL_8E47_0271/I/847:848,
1/I/930:933		Stack outside cWW
homologous
IL_5J7L_268
IL_56987.1
IL_8E47_0281/I/850:851,
1/I/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_8E47_0291/I/856:862,
1/I/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_8E47_0301/I/862:863,
1/I/913:915		Single bulged G
geometric
IL_5J7L_271
IL_00225.13
IL_8E47_0311/I/864:868,
1/I/909:912		C-loop
homologous
IL_5J7L_272
IL_26222.2
IL_8E47_0321/I/870:872,
1/I/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_8E47_0331/I/875:879,
1/I/898:902		Triple sheared
geometric
IL_5J7L_274
IL_17948.2
IL_8E47_0341/I/994:996,
1/I/1159:1160		Single bulged C
homologous
IL_5J7L_276
IL_61258.15
IL_8E47_0351/I/998:1002,
1/I/1153:1157		UAA/GAN
homologous
IL_7A0S_033
IL_38507.2
IL_8E47_0361/I/1004:1011,
1/I/1150:1151		SSU/LSU pseudoknot
homologous
IL_4WF9_037
IL_41203.4
IL_8E47_0371/I/1011:1013,
1/I/1149:1150		Single bulged U
geometric
IL_5J7L_279
IL_89505.4
IL_8E47_0381/I/1018:1024,
1/I/1140:1144		No text annotation
homologous
IL_7RQB_039
NA
IL_8E47_1231/I/1024:1030,
1/I/1124:1140		No text annotation
homologous
IL_5J7L_281
IL_50715.3
IL_8E47_0391/I/1031:1034,
1/I/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_57744.1
IL_8E47_0411/I/1038:1042,
1/I/1113:1117		Partly complementary
geometric
IL_8D29_010
IL_49751.4
IL_8E47_0421/I/1043:1051,
1/I/1108:1112		Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_8E47_1241/I/1054:1090,
1/I/1101:1105		No text annotation
IL_8E47_0431/I/1196:1198,
1/I/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
IL_42997.3
IL_8E47_0441/I/1202:1206,
1/I/1240:1243		No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_8E47_0451/I/1208:1215,
1/I/1234:1238		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_8E47_0461/I/1262:1269,
1/I/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_8E47_0471/I/1310:1313,
1/I/1603:1604		Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_50694.7
IL_8E47_0481/I/1319:1323,
1/I/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_8E47_0491/I/1351:1355,
1/I/1376:1380		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_8E47_0501/I/1357:1361,
1/I/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_8E47_0511/I/1415:1416,
1/I/1582:1587		No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_8E47_0521/I/1417:1421,
1/I/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_8E47_0531/I/1432:1435,
1/I/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_8E47_0541/I/1437:1440,
1/I/1551:1555		tSH-tHW
homologous
IL_5J7L_297
IL_99646.2
IL_8E47_0551/I/1450:1451,
1/I/1459:1461		Single bulged U
homologous
IL_5J7L_298
IL_89505.4
IL_8E47_0561/I/1468:1471,
1/I/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_8E47_1411/I/1474:1478,
1/I/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_8E47_0581/I/1481:1482,
1/I/1507:1510		180 degree turn
homologous
IL_5J7L_301
IL_00881.1
IL_8E47_0591/I/1489:1491,
1/I/1499:1500		Single bulged A
homologous
IL_5J7L_302
IL_31462.5
IL_8E47_0601/I/1526:1529,
1/I/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_8E47_1271/I/1526:1532,
1/I/1539:1546		No text annotation
IL_8E47_0621/I/1651:1656,
1/I/2004:2006		No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_8E47_0631/I/1663:1665,
1/I/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_8E47_0641/I/1666:1669,
1/I/1993:1994		Major groove platform; stack outside cWW
geometric
IL_4WF9_064
IL_50694.7
IL_8E47_1281/I/1666:1674,
1/I/1990:1994		No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_8E47_0651/I/1669:1674,
1/I/1990:1993		Intercalated tWH
homologous
IL_4WF9_065
IL_76758.2
IL_8E47_0661/I/1686:1691,
1/I/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
IL_47346.2
IL_8E47_0671/I/1712:1718,
1/I/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_8E47_0681/I/1720:1724,
1/I/1736:1740		Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_8E47_0691/I/1770:1771,
1/I/1980:1982		Single bulged A
homologous
IL_5J7L_312
IL_31462.5
IL_8E47_0701/I/1798:1804,
1/I/1813:1821		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_8E47_0711/I/1837:1840,
1/I/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_7A0S_066
IL_95583.2
IL_8E47_0721/I/1841:1842,
1/I/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_8E47_0731/I/1846:1849,
1/I/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
IL_68140.4
IL_8E47_1301/I/1851:1860,
1/I/1882:1891		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_8E47_0751/I/1864:1867,
1/I/1874:1878		UAA/GAN variation
homologous
IL_5J7L_317
IL_77691.5
IL_8E47_0761/I/1933:1934,
1/I/1964:1967		Bulged stacked bases
homologous
IL_4WF9_076
IL_22551.3
IL_8E47_0771/I/1934:1945,
1/I/1961:1964		No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_8E47_0781/I/2050:2052,
1/I/2617:2618		Major groove platform
homologous
IL_7RQB_078
NA
IL_8E47_0791/I/2054:2056,
1/I/2612:2615		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_8E47_1311/I/2067:2069,
1/I/2442:2443		Single bulged U
homologous
IL_4WF9_080
IL_89505.4
IL_8E47_0821/I/2070:2071,
1/I/2438:2441		Minor groove platform
geometric
IL_7RQB_081
NA
IL_8E47_0831/I/2081:2083,
1/I/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_8E47_0841/I/2085:2087,
1/I/2232:2234		Isolated non-canonical cWW pair
homologous
IL_7A0S_078
IL_28037.2
IL_8E47_0861/I/2101:2107,
1/I/2182:2188		No text annotation
IL_8E47_0871/I/2202:2204,
1/I/2220:2221		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_8E47_0881/I/2350:2353,
1/I/2364:2367		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_8E47_0891/I/2401:2403,
1/I/2414:2415		No text annotation
IL_8E47_1321/I/2453:2454,
1/I/2498:2500		Single stack bend
homologous
IL_5J7L_391
IL_26793.1
IL_8E47_1421/I/2454:2455,
1/I/2496:2498		Major groove platform
homologous
IL_5J7L_392
IL_48076.6
IL_8E47_1341/I/2457:2459,
1/I/2493:2494		Major groove platform
homologous
IL_5J7L_393
IL_07039.3
IL_8E47_0921/I/2459:2461,
1/I/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
IL_51387.2
IL_8E47_0931/I/2466:2470,
1/I/2480:2484		Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_8E47_1361/I/2507:2508,
1/I/2580:2582		Major groove platform
homologous
IL_5J7L_394
IL_07039.3
IL_8E47_0951/I/2510:2512,
1/I/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
IL_07785.1
IL_8E47_0961/I/2512:2513,
1/I/2571:2574		No text annotation
homologous
IL_5J7L_341
IL_42626.2
IL_8E47_0971/I/2522:2523,
1/I/2540:2543		Major groove platform with intercalation
homologous
IL_7A0S_091
IL_02555.1
IL_8E47_0991/I/2591:2592,
1/I/2601:2603		Single bulged A
homologous
IL_4WF9_098
IL_31462.5
IL_8E47_1001/I/2636:2640,
1/I/2774:2782		tSH-tHS-tHW
homologous
IL_4WF9_099
IL_04638.3
IL_8E47_1011/I/2652:2658,
1/I/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
IL_16458.4
IL_8E47_1021/I/2680:2684,
1/I/2725:2727		C-loop
homologous
IL_7A0S_095
IL_63596.11
IL_8E47_1031/I/2687:2691,
1/I/2718:2722		No text annotation
homologous
IL_4WF9_102
IL_23774.1
IL_8E47_1041/I/2695:2696,
1/I/2711:2714		Multiple bulged bases
homologous
IL_4WF9_103
IL_42626.2
IL_8E47_1051/I/2737:2742,
1/I/2762:2767		UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_8E47_1071/I/2806:2811,
1/I/2889:2892		No text annotation
homologous
IL_5J7L_351
IL_29471.1
IL_8E47_1081/I/2838:2839,
1/I/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_8E47_1091/I/2843:2846,
1/I/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_8E47_1101/I/2847:2852,
1/I/2865:2869		tHS double platform
homologous
IL_5J7L_354
IL_70411.2
IL_8E47_1121/J/17:22,
1/J/61:67		No text annotation
IL_8E47_1131/J/23:28,
1/J/56:60		No text annotation
geometric
IL_5J7L_356
IL_18472.4
IL_8E47_1431/J/30:31,
1/J/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_4WF9_126
IL_68140.4
IL_8E47_1161/J/33:38,
1/J/44:49		No text annotation
homologous
IL_7A0S_105
NA

Problematic loops

#loop idProblemSequence
IL_8E47_117Minor groove platform with extra cWW
IL_8E47_009No text annotation
IL_8E47_118No text annotation
IL_8E47_010No text annotation
IL_8E47_011Isolated cWH basepair
IL_8E47_119No text annotation
IL_8E47_120Isolated non-canonical cWW pair
IL_8E47_022Tandem non-canonical cWW pairs
IL_8E47_121No text annotation
IL_8E47_122Isolated non-canonical cWW pair
IL_8E47_040Tandem non-canonical cWW pairs
IL_8E47_125No text annotation
IL_8E47_126No text annotation
IL_8E47_057No text annotation
IL_8E47_061Tandem non-canonical cWW pairs
IL_8E47_129No text annotation
IL_8E47_074Isolated non-canonical cWW pair
IL_8E47_080No text annotation
IL_8E47_081No text annotation
IL_8E47_085Tandem non-canonical cWW pairs
IL_8E47_090No text annotation
IL_8E47_133No text annotation
IL_8E47_091Major groove platform with extra pair
IL_8E47_135No text annotation
IL_8E47_094No text annotation
IL_8E47_098No text annotation
IL_8E47_106Isolated cWH basepair
IL_8E47_111Isolated non-canonical cWW pair
IL_8E47_137No text annotation
IL_8E47_138No text annotation
IL_8E47_114Isolated non-canonical cWW pair
IL_8E47_115No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8E47_0091/I/30:31,
1/I/474:484,
1/I/496:510		No text annotation
homologous
J3_9DFE_002
J3_92134.2
J3_8E47_0101/I/32:35,
1/I/445:461,
1/I/468:473		No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_8E47_0111/I/56:57,
1/I/70:76,
1/I/110:114		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_8E47_0121/I/297:301,
1/I/316:325,
1/I/337:341		No text annotation
homologous
J3_5J7L_068
J3_46299.2
J3_8E47_0011/I/683:689,
1/I/773:775,
1/I/791:794		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_8E47_0021/I/698:700,
1/I/732:736,
1/I/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_8E47_0031/I/1298:1303,
1/I/1625:1627,
1/I/1639:1642		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_8E47_0041/I/1306:1309,
1/I/1605:1611,
1/I/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_71677.1
J3_8E47_0131/I/1344:1349,
1/I/1382:1385,
1/I/1402:1403		No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_8E47_0141/I/1424:1429,
1/I/1564:1565,
1/I/1568:1574		No text annotation
homologous
J3_7A0S_019
J3_34864.2
J3_8E47_0051/I/2091:2093,
1/I/2196:2200,
1/I/2223:2228		Kink-turn in J3
homologous
J3_5J7L_044
J3_89368.5
J3_8E47_0061/I/2295:2299,
1/I/2317:2323,
1/I/2332:2337		No text annotation
homologous
J3_5J7L_071
J3_44961.1
J3_8E47_0071/I/2517:2520,
1/I/2545:2547,
1/I/2561:2567		No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_8E47_0161/I/2789:2791,
1/I/2805:2806,
1/I/2892:2894		No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_8E47_0081/I/2812:2815,
1/I/2831:2836,
1/I/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_8E47_0181/J/9:16,
1/J/68:79,
1/J/97:111		No text annotation
J4_8E47_0011/I/268:269,
1/I/370:375,
1/I/399:406,
1/I/421:424		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_8E47_0021/I/297:301,
1/I/316:319,
1/I/323:325,
1/I/337:341		No text annotation
homologous
J4_5J7L_019
J4_71729.5
J4_8E47_0031/I/601:604,
1/I/624:628,
1/I/635:638,
1/I/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_8E47_0041/I/1270:1276,
1/I/1294:1295,
1/I/1645:1648,
1/I/2009:2010		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_8E47_0051/I/1310:1314,
1/I/1338:1343,
1/I/1404:1405,
1/I/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_8E47_0061/I/1313:1314,
1/I/1338:1343,
1/I/1404:1405,
1/I/1597:1603		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_8E47_0071/I/1444:1445,
1/I/1466:1467,
1/I/1525:1526,
1/I/1546:1547		No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_8E47_0081/I/1772:1776,
1/I/1788:1792,
1/I/1827:1830,
1/I/1975:1979		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_8E47_0091/I/1833:1835,
1/I/1905:1906,
1/I/1924:1933,
1/I/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_8E47_0101/I/2285:2289,
1/I/2343:2347,
1/I/2370:2372,
1/I/2381:2383		No text annotation
homologous
J4_9DFE_009
J4_04930.6
J4_8E47_0111/I/2643:2646,
1/I/2674:2676,
1/I/2731:2735,
1/I/2769:2771		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J5_8E47_0061/I/47:54,
1/I/116:121,
1/I/130:131,
1/I/148:150,
1/I/176:178		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_8E47_0021/I/531:533,
1/I/560:564,
1/I/577:579,
1/I/1261:1262,
1/I/2017:2018		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_8E47_0031/I/584:589,
1/I/668:671,
1/I/809:812,
1/I/1195:1196,
1/I/1250:1256		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_8E47_0041/I/1674:1682,
1/I/1706:1707,
1/I/1751:1752,
1/I/1756:1764,
1/I/1988:1990		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_8E47_0051/I/2057:2064,
1/I/2446:2453,
1/I/2500:2506,
1/I/2583:2588,
1/I/2606:2611		No text annotation
J6_8E47_0031/I/45:46,
1/I/179:184,
1/I/212:224,
1/I/231:235,
1/I/262:266,
1/I/426:433		No text annotation
J6_8E47_0021/I/2074:2077,
1/I/2243:2246,
1/I/2258:2259,
1/I/2281:2284,
1/I/2384:2395,
1/I/2421:2435		No text annotation
J7_8E47_0011/I/8:15,
1/I/525:531,
1/I/2018:2023,
1/I/2040:2043,
1/I/2625:2630,
1/I/2788:2789,
1/I/2894:2895		No text annotation
J7_8E47_0031/I/817:822,
1/I/835:838,
1/I/940:946,
1/I/971:976,
1/I/987:991,
1/I/1163:1164,
1/I/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_8E47_015No text annotation
J3_8E47_017No text annotation
J5_8E47_001No text annotation
J6_8E47_001No text annotation
J7_8E47_002No text annotation

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