5Z3G Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5Z3G_001 | 1/A/38:45 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_5Z3G_002 | 1/A/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_5Z3G_003 | 1/A/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_5Z3G_004 | 1/A/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_98426.1 | |
| HL_5Z3G_005 | 1/A/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_89380.2 | |
| HL_5Z3G_006 | 1/A/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_5Z3G_007 | 1/A/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_5Z3G_008 | 1/A/278:287 | No text annotation Not in a motif group | ||
| HL_5Z3G_009 | 1/A/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_5Z3G_010 | 1/A/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_5Z3G_012 | 1/A/543:548 | No text annotation Not in a motif group | homologous HL_5TBW_012 HL_86373.2 | |
| HL_5Z3G_013 | 1/A/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_5Z3G_014 | 1/A/640:649 | No text annotation Not in a motif group | ||
| HL_5Z3G_015 | 1/A/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_5Z3G_016 | 1/A/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_5Z3G_018 | 1/A/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_5Z3G_021 | 1/A/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_5Z3G_023 | 1/A/1346:1358 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_5Z3G_024 | 1/A/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_5Z3G_026 | 1/A/3018:3036 | No text annotation Not in a motif group | ||
| HL_5Z3G_027 | 1/A/3067:3074 | No text annotation Not in a motif group | geometric HL_4V88_190 HL_91058.1 | |
| HL_5Z3G_028 | 1/A/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_5Z3G_029 | 1/A/3194:3197 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_5Z3G_031 | 1/A/3303:3311 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_27930.1 | |
| HL_5Z3G_032 | 1/B/47:56 | No text annotation Not in a motif group | geometric HL_6JXM_002 HL_88526.2 | |
| HL_5Z3G_033 | 1/B/69:89 | No text annotation Not in a motif group | ||
| HL_5Z3G_034 | 1/B/108:114 | No text annotation Not in a motif group | ||
| HL_5Z3G_035 | 1/B/124:129 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5Z3G_036 | 1/C/11:17 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_5Z3G_037 | 1/C/35:44 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5Z3G_011 | No text annotation | ||
| HL_5Z3G_017 | No text annotation | ||
| HL_5Z3G_019 | No text annotation | ||
| HL_5Z3G_020 | No text annotation | ||
| HL_5Z3G_022 | No text annotation | ||
| HL_5Z3G_025 | No text annotation | ||
| HL_5Z3G_030 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5Z3G_001 | 1/A/7:8, 1/B/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_5Z3G_002 | 1/A/13:15, 1/B/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_5Z3G_003 | 1/A/27:28, 1/A/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_5Z3G_004 | 1/A/31:38, 1/A/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_5Z3G_005 | 1/A/82:89, 1/A/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_5Z3G_006 | 1/A/123:124, 1/A/144:149 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.2 | |
| IL_5Z3G_007 | 1/A/125:127, 1/A/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_5Z3G_009 | 1/A/169:171, 1/A/247:253 | No text annotation Not in a motif group | ||
| IL_5Z3G_010 | 1/A/177:179, 1/A/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_5Z3G_011 | 1/A/189:191, 1/A/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_5Z3G_012 | 1/A/272:274, 1/A/291:293 | No text annotation Not in a motif group | geometric IL_5MWI_002 IL_95997.1 | |
| IL_5Z3G_013 | 1/A/337:339, 1/B/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_5Z3G_014 | 1/A/376:379, 1/A/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_5Z3G_015 | 1/A/404:410, 1/B/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_5Z3G_016 | 1/A/428:431, 1/A/628:631 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
| IL_5Z3G_020 | 1/A/512:513, 1/A/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_5Z3G_021 | 1/A/517:525, 1/A/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_5Z3G_022 | 1/A/531:538, 1/A/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_5Z3G_023 | 1/A/668:670, 1/A/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_5Z3G_024 | 1/A/680:684, 1/A/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_5Z3G_025 | 1/A/725:728, 1/A/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.1 | |
| IL_5Z3G_026 | 1/A/752:753, 1/A/779:781 | Single bulged A Not in a motif group | geometric IL_4V88_452 IL_37497.2 | |
| IL_5Z3G_027 | 1/A/755:758, 1/A/773:777 | No text annotation Not in a motif group | ||
| IL_5Z3G_028 | 1/A/803:805, 1/A/938:940 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_95997.1 | |
| IL_5Z3G_029 | 1/A/805:809, 1/A/931:938 | No text annotation Not in a motif group | ||
| IL_5Z3G_030 | 1/A/954:957, 1/A/964:967 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_5Z3G_031 | 1/A/969:972, 1/A/1109:1113 | No text annotation Not in a motif group | ||
| IL_5Z3G_032 | 1/A/972:982, 1/A/1101:1109 | No text annotation Not in a motif group | ||
| IL_5Z3G_033 | 1/A/983:985, 1/A/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_5Z3G_034 | 1/A/986:987, 1/A/1062:1098 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1NBS_009 IL_69996.1 | |
| IL_5Z3G_035 | 1/A/1120:1122, 1/A/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_5Z3G_036 | 1/A/1167:1171, 1/A/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_5Z3G_037 | 1/A/1173:1174, 1/A/1312:1326 | No text annotation Not in a motif group | ||
| IL_5Z3G_038 | 1/A/1207:1209, 1/A/1296:1297 | No text annotation Not in a motif group | ||
| IL_5Z3G_039 | 1/A/1376:1378, 1/A/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_5Z3G_041 | 1/A/1388:1395, 1/A/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_5Z3G_043 | 1/A/1444:1450, 1/A/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
| IL_5Z3G_044 | 1/A/3004:3007, 1/A/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_5Z3G_045 | 1/A/3012:3014, 1/A/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_5Z3G_046 | 1/A/3047:3051, 1/A/3091:3094 | No text annotation Not in a motif group | homologous IL_8C3A_126 IL_37712.2 | |
| IL_5Z3G_047 | 1/A/3054:3059, 1/A/3084:3088 | No text annotation Not in a motif group | homologous IL_8C3A_127 IL_17136.1 | |
| IL_5Z3G_049 | 1/A/3103:3107, 1/A/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_89002.2 | |
| IL_5Z3G_050 | 1/A/3164:3166, 1/A/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_5Z3G_051 | 1/A/3177:3179, 1/A/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_5Z3G_052 | 1/A/3179:3188, 1/A/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_5Z3G_053 | 1/A/3193:3194, 1/A/3197:3199 | Single bulged U Not in a motif group | homologous IL_5TBW_125 IL_83039.13 | |
| IL_5Z3G_057 | 1/A/3300:3303, 1/A/3311:3314 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.2 | |
| IL_5Z3G_058 | 1/A/3318:3320, 1/A/3387:3388 | No text annotation Not in a motif group | homologous IL_8C3A_136 IL_83039.13 | |
| IL_5Z3G_059 | 1/A/3324:3325, 1/A/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_5Z3G_061 | 1/A/3331:3337, 1/A/3367:3372 | No text annotation Not in a motif group | ||
| IL_5Z3G_062 | 1/B/64:66, 1/B/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_82068.2 | |
| IL_5Z3G_063 | 1/B/68:69, 1/B/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_5Z3G_064 | 1/C/29:34, 1/C/45:49 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5Z3G_008 | Single stack bend | ||
| IL_5Z3G_017 | No text annotation | ||
| IL_5Z3G_018 | No text annotation | ||
| IL_5Z3G_019 | Single stack bend | ||
| IL_5Z3G_040 | No text annotation | ||
| IL_5Z3G_042 | Single bulged A | ||
| IL_5Z3G_048 | No text annotation | ||
| IL_5Z3G_054 | No text annotation | ||
| IL_5Z3G_055 | Isolated cWH basepair | ||
| IL_5Z3G_056 | Tandem non-canonical cWW pairs | ||
| IL_5Z3G_060 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5Z3G_001 | 1/A/369:376, 1/A/403:404, 1/B/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_5Z3G_002 | 1/A/502:503, 1/A/588:597, 1/A/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_5Z3G_003 | 1/A/3298:3300, 1/A/3314:3318, 1/A/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_5Z3G_004 | 1/B/44:45, 1/B/58:64, 1/B/96:100 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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