7U0H Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7U0H_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_7U0H_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_7U0H_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_7U0H_014 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_7U0H_057 | 1/1/3194:3197 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_7U0H_064 | 1/6/11:17 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7U0H_001 | No text annotation | ||
| HL_7U0H_002 | No text annotation | ||
| HL_7U0H_003 | Other HL | ||
| HL_7U0H_004 | No text annotation | ||
| HL_7U0H_008 | Other HL | ||
| HL_7U0H_009 | No text annotation | ||
| HL_7U0H_010 | No text annotation | ||
| HL_7U0H_011 | No text annotation | ||
| HL_7U0H_012 | No text annotation | ||
| HL_7U0H_013 | No text annotation | ||
| HL_7U0H_015 | No text annotation | ||
| HL_7U0H_016 | No text annotation | ||
| HL_7U0H_017 | No text annotation | ||
| HL_7U0H_018 | GNRA | ||
| HL_7U0H_019 | No text annotation | ||
| HL_7U0H_020 | No text annotation | ||
| HL_7U0H_021 | No text annotation | ||
| HL_7U0H_022 | No text annotation | ||
| HL_7U0H_023 | No text annotation | ||
| HL_7U0H_024 | No text annotation | ||
| HL_7U0H_025 | Other HL | ||
| HL_7U0H_026 | No text annotation | ||
| HL_7U0H_027 | No text annotation | ||
| HL_7U0H_028 | No text annotation | ||
| HL_7U0H_029 | No text annotation | ||
| HL_7U0H_030 | No text annotation | ||
| HL_7U0H_031 | No text annotation | ||
| HL_7U0H_032 | No text annotation | ||
| HL_7U0H_033 | No text annotation | ||
| HL_7U0H_034 | No text annotation | ||
| HL_7U0H_035 | No text annotation | ||
| HL_7U0H_036 | No text annotation | ||
| HL_7U0H_037 | No text annotation | ||
| HL_7U0H_038 | No text annotation | ||
| HL_7U0H_039 | No text annotation | ||
| HL_7U0H_040 | No text annotation | ||
| HL_7U0H_041 | No text annotation | ||
| HL_7U0H_042 | GNRA with one bulged base | ||
| HL_7U0H_043 | UNCG | ||
| HL_7U0H_044 | No text annotation | ||
| HL_7U0H_045 | No text annotation | ||
| HL_7U0H_046 | No text annotation | ||
| HL_7U0H_047 | No text annotation | ||
| HL_7U0H_048 | No text annotation | ||
| HL_7U0H_049 | No text annotation | ||
| HL_7U0H_050 | No text annotation | ||
| HL_7U0H_051 | No text annotation | ||
| HL_7U0H_052 | No text annotation | ||
| HL_7U0H_053 | No text annotation | ||
| HL_7U0H_054 | No text annotation | ||
| HL_7U0H_055 | No text annotation | ||
| HL_7U0H_056 | No text annotation | ||
| HL_7U0H_058 | No text annotation | ||
| HL_7U0H_059 | No text annotation | ||
| HL_7U0H_060 | No text annotation | ||
| HL_7U0H_061 | No text annotation | ||
| HL_7U0H_062 | No text annotation | ||
| HL_7U0H_063 | No text annotation | ||
| HL_7U0H_065 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7U0H_013 | 1/1/337:339, 1/2/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_7U0H_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_7U0H_015 | 1/1/404:410, 1/2/13:19 | No text annotation Not in a motif group | homologous IL_8C3A_016 IL_66414.6 | |
| IL_7U0H_019 | 1/1/512:513, 1/1/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_7U0H_020 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_7U0H_021 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_7U0H_023 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_7U0H_035 | 1/1/954:956, 1/1/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_7U0H_036 | 1/1/969:970, 1/1/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_7U0H_038 | 1/1/983:985, 1/1/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_7U0H_040 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_7U0H_041 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_7U0H_042 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5TBW_049 IL_15861.7 | |
| IL_7U0H_043 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | homologous IL_5TBW_050 IL_83039.13 | |
| IL_7U0H_050 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_7U0H_051 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_7U0H_094 | 1/1/3164:3166, 1/1/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_7U0H_096 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_7U0H_097 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_7U0H_098 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | homologous IL_5TBW_125 IL_83039.13 | |
| IL_7U0H_113 | 1/6/26:27, 1/6/51:54 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_7U0H_114 | 1/6/30:34, 1/6/45:48 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7U0H_001 | No text annotation | ||
| IL_7U0H_002 | No text annotation | ||
| IL_7U0H_003 | No text annotation | ||
| IL_7U0H_004 | tSH-tHW-tHH-tHS | ||
| IL_7U0H_005 | No text annotation | ||
| IL_7U0H_006 | No text annotation | ||
| IL_7U0H_007 | No text annotation | ||
| IL_7U0H_008 | Other IL | ||
| IL_7U0H_009 | No text annotation | ||
| IL_7U0H_010 | 8-nt loop receptor | ||
| IL_7U0H_011 | No text annotation | ||
| IL_7U0H_012 | No text annotation | ||
| IL_7U0H_016 | No text annotation | ||
| IL_7U0H_017 | Isolated near basepair | ||
| IL_7U0H_018 | No text annotation | ||
| IL_7U0H_022 | No text annotation | ||
| IL_7U0H_024 | UAA/GAN | ||
| IL_7U0H_025 | Single bulged A | ||
| IL_7U0H_026 | Single stack bend | ||
| IL_7U0H_027 | No text annotation | ||
| IL_7U0H_028 | No text annotation | ||
| IL_7U0H_029 | No text annotation | ||
| IL_7U0H_030 | No text annotation | ||
| IL_7U0H_031 | Triple sheared | ||
| IL_7U0H_032 | No text annotation | ||
| IL_7U0H_033 | Single bulged U | ||
| IL_7U0H_034 | No text annotation | ||
| IL_7U0H_037 | No text annotation | ||
| IL_7U0H_039 | No text annotation | ||
| IL_7U0H_044 | No text annotation | ||
| IL_7U0H_045 | No text annotation | ||
| IL_7U0H_046 | Single bulged U | ||
| IL_7U0H_047 | No text annotation | ||
| IL_7U0H_048 | No text annotation | ||
| IL_7U0H_049 | No text annotation | ||
| IL_7U0H_052 | Kink-turn | ||
| IL_7U0H_053 | Single bulged A | ||
| IL_7U0H_054 | No text annotation | ||
| IL_7U0H_055 | C-loop | ||
| IL_7U0H_056 | No text annotation | ||
| IL_7U0H_057 | No text annotation | ||
| IL_7U0H_058 | Multiple bulged bases | ||
| IL_7U0H_059 | No text annotation | ||
| IL_7U0H_060 | Triple sheared | ||
| IL_7U0H_061 | No text annotation | ||
| IL_7U0H_062 | Single bulged C | ||
| IL_7U0H_063 | No text annotation | ||
| IL_7U0H_064 | No text annotation | ||
| IL_7U0H_065 | No text annotation | ||
| IL_7U0H_066 | Kink-turn | ||
| IL_7U0H_067 | No text annotation | ||
| IL_7U0H_068 | No text annotation | ||
| IL_7U0H_069 | No text annotation | ||
| IL_7U0H_070 | Intercalated tWH | ||
| IL_7U0H_071 | No text annotation | ||
| IL_7U0H_072 | No text annotation | ||
| IL_7U0H_073 | No text annotation | ||
| IL_7U0H_074 | No text annotation | ||
| IL_7U0H_075 | No text annotation | ||
| IL_7U0H_076 | No text annotation | ||
| IL_7U0H_077 | Kink-turn related | ||
| IL_7U0H_078 | No text annotation | ||
| IL_7U0H_079 | CC cWW | ||
| IL_7U0H_080 | Single bulged A | ||
| IL_7U0H_081 | No text annotation | ||
| IL_7U0H_082 | No text annotation | ||
| IL_7U0H_083 | No text annotation | ||
| IL_7U0H_084 | No text annotation | ||
| IL_7U0H_085 | No text annotation | ||
| IL_7U0H_086 | No text annotation | ||
| IL_7U0H_087 | Double sheared | ||
| IL_7U0H_088 | No text annotation | ||
| IL_7U0H_089 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7U0H_090 | Major groove minor groove platform with tHH | ||
| IL_7U0H_091 | No text annotation | ||
| IL_7U0H_092 | No text annotation | ||
| IL_7U0H_093 | No text annotation | ||
| IL_7U0H_095 | No text annotation | ||
| IL_7U0H_099 | No text annotation | ||
| IL_7U0H_100 | No text annotation | ||
| IL_7U0H_101 | Tandem non-canonical cWW pairs | ||
| IL_7U0H_102 | Tandem non-canonical cWW pairs | ||
| IL_7U0H_103 | Single bulged U | ||
| IL_7U0H_104 | Single bulged U | ||
| IL_7U0H_105 | No text annotation | ||
| IL_7U0H_106 | No text annotation | ||
| IL_7U0H_107 | No text annotation | ||
| IL_7U0H_108 | tWS-tSW | ||
| IL_7U0H_109 | Multiple bulged bases | ||
| IL_7U0H_110 | No text annotation | ||
| IL_7U0H_111 | Isolated non-canonical cWW with bulges | ||
| IL_7U0H_112 | Single bulged U |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7U0H_004 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7U0H_001 | No text annotation | ||
| J3_7U0H_002 | No text annotation | ||
| J3_7U0H_003 | No text annotation | ||
| J3_7U0H_005 | No text annotation | ||
| J3_7U0H_006 | No text annotation | ||
| J3_7U0H_007 | No text annotation | ||
| J3_7U0H_008 | No text annotation | ||
| J3_7U0H_009 | No text annotation | ||
| J3_7U0H_010 | No text annotation | ||
| J3_7U0H_011 | No text annotation | ||
| J3_7U0H_012 | No text annotation | ||
| J3_7U0H_013 | No text annotation |
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