3T1H Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3T1H_001 | 1/A/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_3T1H_002 | 1/A/78:84 | No text annotation Not in a motif group | homologous HL_4LFB_002 HL_30784.2 | |
| HL_3T1H_003 | 1/A/152:157 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_3T1H_004 | 1/A/186:191 | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_3T1H_005 | 1/A/207:211 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_3T1H_006 | 1/A/254:262 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_3T1H_007 | 1/A/291:296 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_3T1H_008 | 1/A/315:328 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_3T1H_009 | 1/A/337:342 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_3T1H_010 | 1/A/374:379 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_3T1H_011 | 1/A/414:419 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_3T1H_012 | 1/A/452:458 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_3T1H_013 | 1/A/505:510 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_3T1H_014 | 1/A/600:606 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_3T1H_015 | 1/A/672:681 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_3T1H_016 | 1/A/709:714 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_3T1H_017 | 1/A/769:779 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_3T1H_018 | 1/A/820:826 | No text annotation Not in a motif group | geometric HL_4V9F_019 HL_90617.2 | |
| HL_3T1H_019 | 1/A/839:844 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_3T1H_020 | 1/A/874:879 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_42097.1 | |
| HL_3T1H_021 | 1/A/940:949 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_3T1H_022 | 1/A/990:995 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_3T1H_023 | 1/A/1008:1013 | No text annotation Not in a motif group | homologous HL_4LFB_023 NA | |
| HL_3T1H_024 | 1/A/1058:1063 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_3T1H_026 | 1/A/1114:1124 | No text annotation Not in a motif group | ||
| HL_3T1H_027 | 1/A/1146:1153 | No text annotation Not in a motif group | ||
| HL_3T1H_028 | 1/A/1246:1251 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_3T1H_029 | 1/A/1295:1304 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_3T1H_030 | 1/A/1337:1348 | No text annotation Not in a motif group | ||
| HL_3T1H_031 | 1/A/1429:1434 | UNCG Not in a motif group | homologous HL_4LFB_031 HL_03562.2 | |
| HL_3T1H_032 | 1/A/1492:1497 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3T1H_025 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3T1H_001 | 1/A/30:32, 1/A/535:536 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_3T1H_002 | 1/A/44:45, 1/A/391:393 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_3T1H_003 | 1/A/47:52, 1/A/354:356 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_3T1H_004 | 1/A/54:56, 1/A/351:352 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_3T1H_005 | 1/A/63:66, 1/A/96:97 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_3T1H_006 | 1/A/67:69, 1/A/93:95 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_3T1H_007 | 1/A/122:125, 1/A/226:227 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_3T1H_008 | 1/A/126:130, 1/A/222:225 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_3T1H_009 | 1/A/142:147, 1/A/162:168 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_3T1H_010 | 1/A/150:152, 1/A/157:159 | No text annotation Not in a motif group | geometric IL_1NBS_006 IL_95997.1 | |
| IL_3T1H_011 | 1/A/180:182, 1/A/195:197 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_3T1H_012 | 1/A/237:242, 1/A/272:279 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_3T1H_013 | 1/A/244:247, 1/A/269:270 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_3T1H_014 | 1/A/287:288, 1/A/299:303 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_3T1H_015 | 1/A/362:365, 1/A/386:388 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_3T1H_016 | 1/A/366:370, 1/A/384:385 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_3T1H_017 | 1/A/370:371, 1/A/382:384 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.2 | |
| IL_3T1H_018 | 1/A/404:411, 1/A/422:428 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_3T1H_019 | 1/A/440:444, 1/A/467:472 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_3T1H_020 | 1/A/444:449, 1/A/461:467 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_3T1H_021 | 1/A/487:494, 1/A/523:524 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_3T1H_022 | 1/A/498:504, 1/A/511:519 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_3T1H_023 | 1/A/552:558, 1/A/857:858 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_3T1H_024 | 1/A/563:567, 1/A/740:744 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_3T1H_025 | 1/A/577:579, 1/A/627:628 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_3T1H_026 | 1/A/580:581, 1/A/623:626 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_3T1H_027 | 1/A/588:595, 1/A/611:616 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_3T1H_028 | 1/A/637:638, 1/A/734:737 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_3T1H_029 | 1/A/640:641, 1/A/730:732 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_3T1H_030 | 1/A/645:649, 1/A/723:726 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_3T1H_031 | 1/A/656:661, 1/A/695:700 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_3T1H_032 | 1/A/666:671, 1/A/682:690 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_3T1H_033 | 1/A/757:761, 1/A/787:788 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_3T1H_034 | 1/A/762:766, 1/A/782:786 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_3T1H_035 | 1/A/864:871, 1/A/882:887 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_3T1H_036 | 1/A/899:900, 1/A/1375:1377 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_3T1H_037 | 1/A/902:904, 1/A/1372:1373 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_3T1H_038 | 1/A/910:912, 1/A/1362:1366 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_3T1H_039 | 1/A/930:931, 1/A/1207:1209 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_3T1H_040 | 1/A/970:974, 1/A/1026:1027 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_3T1H_044 | 1/A/985:988, 1/A/997:1000 | No text annotation Not in a motif group | ||
| IL_3T1H_045 | 1/A/1007:1008, 1/A/1013:1015 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_3T1H_046 | 1/A/1030:1032, 1/A/1189:1190 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_3T1H_047 | 1/A/1034:1038, 1/A/1185:1187 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_3T1H_049 | 1/A/1042:1043, 1/A/1176:1178 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_3T1H_050 | 1/A/1043:1045, 1/A/1174:1176 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_3T1H_051 | 1/A/1106:1114, 1/A/1124:1131 | No text annotation Not in a motif group | ||
| IL_3T1H_052 | 1/A/1227:1234, 1/A/1265:1272 | No text annotation Not in a motif group | ||
| IL_3T1H_053 | 1/A/1236:1240, 1/A/1257:1263 | No text annotation Not in a motif group | ||
| IL_3T1H_054 | 1/A/1240:1243, 1/A/1254:1257 | No text annotation Not in a motif group | ||
| IL_3T1H_055 | 1/A/1284:1289, 1/A/1310:1315 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_3T1H_056 | 1/A/1381:1383, 1/A/1478:1481 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_3T1H_057 | 1/A/1383:1386, 1/A/1474:1478 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_3T1H_058 | 1/A/1387:1389, 1/A/1471:1473 | No text annotation Not in a motif group | geometric IL_3GM7_005 IL_95997.1 | |
| IL_3T1H_059 | 1/A/1389:1391, 1/A/1468:1471 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_3T1H_060 | 1/A/1394:1396, 1/A/1463:1465 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_3T1H_061 | 1/A/1398:1402, 1/A/1457:1461 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_3T1H_063 | 1/A/1413:1417, 1/A/1443:1446 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_3T1H_064 | 1/A/1417:1419, 1/A/1441:1443 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_3T1H_065 | 1/A/1422:1427, 1/A/1436:1438 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3T1H_041 | No text annotation | ||
| IL_3T1H_042 | No text annotation | ||
| IL_3T1H_043 | No text annotation | ||
| IL_3T1H_048 | Minor groove platform | ||
| IL_3T1H_062 | UG cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3T1H_001 | 1/A/809:812, 1/A/834:838, 1/A/845:851 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_3T1H_002 | 1/A/913:916, 1/A/1325:1331, 1/A/1354:1361 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_3T1H_003 | 1/A/920:923, 1/A/1216:1218, 1/A/1318:1321 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_3T1H_004 | 1/A/932:939, 1/A/950:961, 1/A/1202:1206 | No text annotation Not in a motif group | ||
| J3_3T1H_005 | 1/A/967:970, 1/A/1027:1029, 1/A/1191:1196 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_3T1H_006 | 1/A/980:985, 1/A/1000:1007, 1/A/1015:1020 | No text annotation Not in a motif group | ||
| J3_3T1H_007 | 1/A/1045:1050, 1/A/1089:1095, 1/A/1168:1174 | No text annotation Not in a motif group | ||
| J3_3T1H_008 | 1/A/1098:1100, 1/A/1137:1143, 1/A/1156:1165 | No text annotation Not in a motif group | ||
| J3_3T1H_009 | 1/A/1218:1222, 1/A/1277:1284, 1/A/1315:1318 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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