6V3D Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_6V3D_001 | 1/AN1/66:75 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
HL_6V3D_002 | 1/AN1/93:104 | No text annotation Not in a motif group | ||
HL_6V3D_003 | 1/AN1/130:135 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
HL_6V3D_004 | 1/AN1/144:149 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
HL_6V3D_005 | 1/AN1/165:175 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
HL_6V3D_006 | 1/AN1/201:208 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
HL_6V3D_007 | 1/AN1/232:237 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
HL_6V3D_008 | 1/AN1/253:259 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.7 | |
HL_6V3D_009 | 1/AN1/307:314 | No text annotation Not in a motif group | geometric HL_7A0S_010 HL_89380.2 | |
HL_6V3D_010 | 1/AN1/321:325 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
HL_6V3D_011 | 1/AN1/329:337 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
HL_6V3D_012 | 1/AN1/381:391 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
HL_6V3D_013 | 1/AN1/409:416 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
HL_6V3D_014 | 1/AN1/461:466 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
HL_6V3D_015 | 1/AN1/486:492 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
HL_6V3D_016 | 1/AN1/543:546 | No text annotation Not in a motif group | geometric HL_5TBW_071 HL_53837.1 | |
HL_6V3D_017 | 1/AN1/564:573 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
HL_6V3D_018 | 1/AN1/609:615 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
HL_6V3D_019 | 1/AN1/627:632 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
HL_6V3D_020 | 1/AN1/639:645 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
HL_6V3D_021 | 1/AN1/710:717 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
HL_6V3D_022 | 1/AN1/742:751 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
HL_6V3D_023 | 1/AN1/777:783 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
HL_6V3D_024 | 1/AN1/824:829 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
HL_6V3D_025 | 1/AN1/882:890 | No text annotation Not in a motif group | ||
HL_6V3D_026 | 1/AN1/951:960 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
HL_6V3D_027 | 1/AN1/975:982 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
HL_6V3D_028 | 1/AN1/1060:1073 | No text annotation Not in a motif group | ||
HL_6V3D_029 | 1/AN1/1087:1098 | No text annotation Not in a motif group | ||
HL_6V3D_030 | 1/AN1/1166:1176 | No text annotation Not in a motif group | ||
HL_6V3D_031 | 1/AN1/1217:1222 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
HL_6V3D_032 | 1/AN1/1276:1284 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
HL_6V3D_033 | 1/AN1/1319:1325 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
HL_6V3D_034 | 1/AN1/1358:1363 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
HL_6V3D_035 | 1/AN1/1384:1393 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
HL_6V3D_036 | 1/AN1/1446:1454 | No text annotation Not in a motif group | geometric HL_5J7L_169 HL_53837.1 | |
HL_6V3D_037 | 1/AN1/1487:1493 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
HL_6V3D_038 | 1/AN1/1563:1566 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
HL_6V3D_039 | 1/AN1/1610:1617 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
HL_6V3D_040 | 1/AN1/1628:1634 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
HL_6V3D_041 | 1/AN1/1689:1694 | UNCG Not in a motif group | geometric HL_4LFB_009 HL_03562.2 | |
HL_6V3D_042 | 1/AN1/1723:1729 | No text annotation Not in a motif group | geometric HL_6VMY_004 HL_91058.1 | |
HL_6V3D_043 | 1/AN1/1748:1752 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
HL_6V3D_044 | 1/AN1/1773:1783 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
HL_6V3D_045 | 1/AN1/1802:1807 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
HL_6V3D_046 | 1/AN1/1864:1869 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_42097.1 | |
HL_6V3D_047 | 1/AN1/1906:1916 | No text annotation Not in a motif group | ||
HL_6V3D_048 | 1/AN1/1945:1953 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
HL_6V3D_049 | 1/AN1/2023:2032 | No text annotation Not in a motif group | ||
HL_6V3D_050 | 1/AN1/2136:2148 | No text annotation Not in a motif group | ||
HL_6V3D_051 | 1/AN1/2205:2211 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
HL_6V3D_052 | 1/AN1/2244:2252 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
HL_6V3D_053 | 1/AN1/2260:2272 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
HL_6V3D_054 | 1/AN1/2299:2309 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
HL_6V3D_055 | 1/AN1/2320:2327 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
HL_6V3D_056 | 1/AN1/2351:2358 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
HL_6V3D_057 | 1/AN1/2370:2375 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
HL_6V3D_058 | 1/AN1/2400:2409 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
HL_6V3D_059 | 1/AN1/2467:2475 | No text annotation Not in a motif group | ||
HL_6V3D_060 | 1/AN1/2524:2531 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
HL_6V3D_061 | 1/AN1/2547:2553 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
HL_6V3D_062 | 1/AN1/2590:2595 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
HL_6V3D_063 | 1/AN1/2654:2659 | No text annotation Not in a motif group | geometric HL_7A0S_063 HL_42097.1 | |
HL_6V3D_064 | 1/AN1/2697:2702 | Ribsomal LSU H95 Not in a motif group | homologous HL_7A0S_064 HL_46680.1 | |
HL_6V3D_065 | 1/AN1/2741:2755 | No text annotation Not in a motif group | homologous HL_4WF9_062 HL_56677.7 | |
HL_6V3D_066 | 1/AN1/2792:2795 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
HL_6V3D_067 | 1/AN1/2815:2823 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
HL_6V3D_068 | 1/AN1/2852:2857 | Other HL Not in a motif group | homologous HL_4WF9_065 HL_42097.1 | |
HL_6V3D_069 | 1/B/36:42 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
HL_6V3D_070 | 1/B/83:88 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 |
Problematic loops
No problematic loops
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_6V3D_001 | 1/AN1/31:37, 1/AN1/509:515 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.6 | |
IL_6V3D_002 | 1/AN1/43:44, 1/AN1/441:443 | Single bulged A Not in a motif group | homologous IL_5J7L_246 IL_37497.2 | |
IL_6V3D_003 | 1/AN1/50:51, 1/AN1/433:435 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
IL_6V3D_004 | 1/AN1/88:92, 1/AN1/105:112 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
IL_6V3D_005 | 1/AN1/190:191, 1/AN1/219:221 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
IL_6V3D_006 | 1/AN1/195:201, 1/AN1/208:215 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_006 IL_04346.7 | |
IL_6V3D_007 | 1/AN1/246:252, 1/AN1/260:265 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
IL_6V3D_008 | 1/AN1/276:282, 1/AN1/362:369 | No text annotation Not in a motif group | ||
IL_6V3D_009 | 1/AN1/295:297, 1/AN1/345:349 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
IL_6V3D_010 | 1/AN1/305:307, 1/AN1/314:316 | No text annotation Not in a motif group | geometric IL_3SZX_001 IL_95997.1 | |
IL_6V3D_011 | 1/AN1/480:483, 1/AN1/495:508 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
IL_6V3D_012 | 1/AN1/535:538, 1/AN1/552:555 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
IL_6V3D_013 | 1/AN1/542:543, 1/AN1/546:548 | Single bulged U Not in a motif group | geometric IL_7RQB_008 IL_83039.13 | |
IL_6V3D_014 | 1/AN1/562:564, 1/AN1/573:575 | No text annotation Not in a motif group | homologous IL_4WF9_017 IL_95997.1 | |
IL_6V3D_015 | 1/AN1/604:608, 1/AN1/616:620 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
IL_6V3D_016 | 1/AN1/670:672, 1/AN1/804:806 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_95997.1 | |
IL_6V3D_017 | 1/AN1/672:676, 1/AN1/797:804 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
IL_6V3D_018 | 1/AN1/695:696, 1/AN1/761:763 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
IL_6V3D_019 | 1/AN1/700:701, 1/AN1/726:728 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.2 | |
IL_6V3D_020 | 1/AN1/701:705, 1/AN1/722:726 | Triple sheared Not in a motif group | geometric IL_4WF9_024 IL_56467.8 | |
IL_6V3D_021 | 1/AN1/736:738, 1/AN1/755:756 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
IL_6V3D_022 | 1/AN1/740:742, 1/AN1/751:753 | No text annotation Not in a motif group | homologous IL_7A0S_020 IL_95997.1 | |
IL_6V3D_023 | 1/AN1/773:775, 1/AN1/785:789 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
IL_6V3D_024 | 1/AN1/841:845, 1/AN1/930:932 | No text annotation Not in a motif group | ||
IL_6V3D_025 | 1/AN1/845:846, 1/AN1/928:930 | No text annotation Not in a motif group | ||
IL_6V3D_026 | 1/AN1/848:849, 1/AN1/924:926 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
IL_6V3D_027 | 1/AN1/854:860, 1/AN1/913:919 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
IL_6V3D_028 | 1/AN1/860:861, 1/AN1/911:913 | Minor groove platform Not in a motif group | geometric IL_7A0S_028 IL_42622.2 | |
IL_6V3D_029 | 1/AN1/862:867, 1/AN1/906:910 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
IL_6V3D_030 | 1/AN1/868:870, 1/AN1/903:905 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
IL_6V3D_031 | 1/AN1/873:877, 1/AN1/896:900 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
IL_6V3D_032 | 1/AN1/878:881, 1/AN1/891:895 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_003 IL_30621.2 | |
IL_6V3D_033 | 1/AN1/991:993, 1/AN1/1157:1158 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
IL_6V3D_034 | 1/AN1/995:999, 1/AN1/1151:1155 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
IL_6V3D_035 | 1/AN1/1001:1008, 1/AN1/1148:1149 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4WF9_037 IL_15861.7 | |
IL_6V3D_036 | 1/AN1/1008:1010, 1/AN1/1147:1148 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
IL_6V3D_037 | 1/AN1/1015:1021, 1/AN1/1137:1142 | No text annotation Not in a motif group | homologous IL_7RQB_039 IL_57188.3 | |
IL_6V3D_038 | 1/AN1/1021:1027, 1/AN1/1121:1137 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
IL_6V3D_039 | 1/AN1/1028:1031, 1/AN1/1118:1120 | No text annotation Not in a motif group | ||
IL_6V3D_040 | 1/AN1/1035:1038, 1/AN1/1111:1114 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
IL_6V3D_041 | 1/AN1/1038:1048, 1/AN1/1105:1111 | No text annotation Not in a motif group | ||
IL_6V3D_042 | 1/AN1/1054:1056, 1/AN1/1077:1078 | Single stack bend Not in a motif group | geometric IL_7KGA_006 IL_76488.2 | |
IL_6V3D_043 | 1/AN1/1056:1060, 1/AN1/1073:1077 | No text annotation Not in a motif group | ||
IL_6V3D_044 | 1/AN1/1191:1193, 1/AN1/1242:1245 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.2 | |
IL_6V3D_045 | 1/AN1/1197:1201, 1/AN1/1235:1238 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
IL_6V3D_046 | 1/AN1/1203:1210, 1/AN1/1229:1233 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
IL_6V3D_047 | 1/AN1/1257:1264, 1/AN1/2007:2013 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
IL_6V3D_048 | 1/AN1/1305:1308, 1/AN1/1601:1602 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_290 IL_50694.2 | |
IL_6V3D_049 | 1/AN1/1314:1318, 1/AN1/1326:1328 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
IL_6V3D_050 | 1/AN1/1346:1350, 1/AN1/1371:1375 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
IL_6V3D_051 | 1/AN1/1352:1356, 1/AN1/1365:1369 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
IL_6V3D_052 | 1/AN1/1409:1411, 1/AN1/1580:1586 | No text annotation Not in a motif group | ||
IL_6V3D_053 | 1/AN1/1412:1416, 1/AN1/1575:1579 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
IL_6V3D_054 | 1/AN1/1427:1430, 1/AN1/1555:1559 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
IL_6V3D_055 | 1/AN1/1432:1435, 1/AN1/1549:1553 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
IL_6V3D_056 | 1/AN1/1445:1446, 1/AN1/1454:1456 | Single bulged U Not in a motif group | homologous IL_5J7L_298 IL_83039.13 | |
IL_6V3D_057 | 1/AN1/1468:1473, 1/AN1/1509:1514 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
IL_6V3D_058 | 1/AN1/1476:1479, 1/AN1/1500:1506 | No text annotation Not in a motif group | ||
IL_6V3D_059 | 1/AN1/1480:1486, 1/AN1/1494:1499 | No text annotation Not in a motif group | ||
IL_6V3D_060 | 1/AN1/1649:1654, 1/AN1/2000:2002 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
IL_6V3D_061 | 1/AN1/1661:1663, 1/AN1/1991:1993 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
IL_6V3D_062 | 1/AN1/1664:1667, 1/AN1/1989:1990 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
IL_6V3D_063 | 1/AN1/1667:1672, 1/AN1/1986:1989 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
IL_6V3D_064 | 1/AN1/1684:1689, 1/AN1/1694:1700 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5J7L_308 IL_65969.2 | |
IL_6V3D_065 | 1/AN1/1716:1720, 1/AN1/1732:1736 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
IL_6V3D_066 | 1/AN1/1766:1767, 1/AN1/1976:1978 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
IL_6V3D_067 | 1/AN1/1794:1800, 1/AN1/1809:1817 | Kink-turn related Not in a motif group | homologous IL_7A0S_065 IL_17069.3 | |
IL_6V3D_068 | 1/AN1/1833:1836, 1/AN1/1898:1899 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
IL_6V3D_069 | 1/AN1/1837:1838, 1/AN1/1894:1897 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
IL_6V3D_070 | 1/AN1/1842:1845, 1/AN1/1889:1890 | No text annotation Not in a motif group | ||
IL_6V3D_071 | 1/AN1/1860:1863, 1/AN1/1870:1874 | No text annotation Not in a motif group | ||
IL_6V3D_072 | 1/AN1/1929:1930, 1/AN1/1960:1963 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_071 IL_59677.2 | |
IL_6V3D_073 | 1/AN1/1930:1941, 1/AN1/1957:1960 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
IL_6V3D_074 | 1/AN1/2045:2048, 1/AN1/2613:2615 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
IL_6V3D_075 | 1/AN1/2050:2052, 1/AN1/2608:2611 | No text annotation Not in a motif group | ||
IL_6V3D_076 | 1/AN1/2060:2062, 1/AN1/2440:2442 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
IL_6V3D_077 | 1/AN1/2063:2066, 1/AN1/2437:2439 | No text annotation Not in a motif group | geometric IL_5C5W_002 IL_95997.1 | |
IL_6V3D_078 | 1/AN1/2066:2067, 1/AN1/2434:2437 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
IL_6V3D_079 | 1/AN1/2077:2079, 1/AN1/2232:2235 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
IL_6V3D_080 | 1/AN1/2081:2083, 1/AN1/2228:2230 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
IL_6V3D_081 | 1/AN1/2098:2101, 1/AN1/2181:2183 | No text annotation Not in a motif group | ||
IL_6V3D_082 | 1/AN1/2101:2102, 1/AN1/2179:2181 | No text annotation Not in a motif group | ||
IL_6V3D_083 | 1/AN1/2104:2106, 1/AN1/2175:2177 | No text annotation Not in a motif group | homologous IL_3U4M_001 IL_95997.1 | |
IL_6V3D_084 | 1/AN1/2106:2112, 1/AN1/2161:2175 | No text annotation Not in a motif group | ||
IL_6V3D_085 | 1/AN1/2112:2133, 1/AN1/2150:2161 | No text annotation Not in a motif group | ||
IL_6V3D_086 | 1/AN1/2133:2136, 1/AN1/2148:2150 | No text annotation Not in a motif group | ||
IL_6V3D_087 | 1/AN1/2198:2200, 1/AN1/2216:2217 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
IL_6V3D_088 | 1/AN1/2346:2349, 1/AN1/2360:2363 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
IL_6V3D_089 | 1/AN1/2397:2399, 1/AN1/2410:2411 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.13 | |
IL_6V3D_090 | 1/AN1/2449:2450, 1/AN1/2494:2496 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
IL_6V3D_091 | 1/AN1/2450:2451, 1/AN1/2492:2494 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
IL_6V3D_092 | 1/AN1/2452:2455, 1/AN1/2489:2491 | Major groove platform with extra pair Not in a motif group | geometric IL_4KQY_003 IL_47263.2 | |
IL_6V3D_093 | 1/AN1/2455:2458, 1/AN1/2484:2489 | No text annotation Not in a motif group | ||
IL_6V3D_094 | 1/AN1/2462:2466, 1/AN1/2476:2480 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
IL_6V3D_095 | 1/AN1/2503:2505, 1/AN1/2575:2578 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
IL_6V3D_096 | 1/AN1/2506:2508, 1/AN1/2570:2574 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4WF9_095 IL_90933.2 | |
IL_6V3D_097 | 1/AN1/2508:2509, 1/AN1/2567:2570 | No text annotation Not in a motif group | homologous IL_4WF9_096 IL_71530.2 | |
IL_6V3D_098 | 1/AN1/2518:2519, 1/AN1/2536:2539 | Minor groove platform with intercalation Not in a motif group | homologous IL_7A0S_091 IL_95601.3 | |
IL_6V3D_099 | 1/AN1/2584:2586, 1/AN1/2600:2602 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
IL_6V3D_100 | 1/AN1/2587:2588, 1/AN1/2597:2599 | No text annotation Not in a motif group | ||
IL_6V3D_101 | 1/AN1/2632:2636, 1/AN1/2770:2778 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
IL_6V3D_102 | 1/AN1/2647:2654, 1/AN1/2659:2665 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
IL_6V3D_103 | 1/AN1/2676:2680, 1/AN1/2721:2723 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
IL_6V3D_104 | 1/AN1/2683:2687, 1/AN1/2714:2718 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
IL_6V3D_105 | 1/AN1/2691:2692, 1/AN1/2707:2710 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
IL_6V3D_106 | 1/AN1/2733:2738, 1/AN1/2758:2763 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
IL_6V3D_107 | 1/AN1/2791:2792, 1/AN1/2795:2797 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
IL_6V3D_108 | 1/AN1/2802:2807, 1/AN1/2885:2888 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
IL_6V3D_109 | 1/AN1/2834:2835, 1/AN1/2874:2876 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
IL_6V3D_110 | 1/AN1/2839:2842, 1/AN1/2866:2870 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
IL_6V3D_111 | 1/AN1/2843:2848, 1/AN1/2861:2865 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
IL_6V3D_112 | 1/B/15:16, 1/B/63:65 | Major groove intercalation Not in a motif group | homologous IL_4V9F_101 IL_37497.2 | |
IL_6V3D_113 | 1/B/20:26, 1/B/54:59 | No text annotation Not in a motif group | ||
IL_6V3D_114 | 1/B/28:36, 1/B/42:52 | No text annotation Not in a motif group | ||
IL_6V3D_115 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
No problematic loops
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_6V3D_001 | 1/AN1/37:38, 1/AN1/473:480, 1/AN1/508:509 | No text annotation Not in a motif group | homologous J3_5J7L_036 NA | |
J3_6V3D_002 | 1/AN1/63:64, 1/AN1/77:83, 1/AN1/117:121 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
J3_6V3D_003 | 1/AN1/681:687, 1/AN1/771:773, 1/AN1/789:792 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
J3_6V3D_004 | 1/AN1/696:698, 1/AN1/730:734, 1/AN1/758:761 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
J3_6V3D_005 | 1/AN1/1052:1054, 1/AN1/1078:1087, 1/AN1/1098:1101 | No text annotation Not in a motif group | ||
J3_6V3D_006 | 1/AN1/1293:1298, 1/AN1/1623:1625, 1/AN1/1637:1640 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
J3_6V3D_007 | 1/AN1/1301:1304, 1/AN1/1603:1609, 1/AN1/1618:1620 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
J3_6V3D_008 | 1/AN1/1339:1344, 1/AN1/1377:1380, 1/AN1/1397:1398 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
J3_6V3D_009 | 1/AN1/2087:2089, 1/AN1/2192:2196, 1/AN1/2219:2224 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
J3_6V3D_010 | 1/AN1/2291:2295, 1/AN1/2313:2319, 1/AN1/2328:2333 | No text annotation Not in a motif group | ||
J3_6V3D_011 | 1/AN1/2513:2516, 1/AN1/2541:2543, 1/AN1/2557:2563 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
J3_6V3D_012 | 1/AN1/2785:2788, 1/AN1/2800:2802, 1/AN1/2888:2890 | No text annotation Not in a motif group | ||
J3_6V3D_013 | 1/AN1/2810:2811, 1/AN1/2827:2832, 1/AN1/2878:2882 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
J3_6V3D_014 | 1/B/8:14, 1/B/66:67, 1/B/104:107 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: