RNA 3D Hub //

Internal Loop Motif Atlas Release 0.2

Polymorphs
#Varna 2DMotifNum NtsInstances
1
  • IL_63653.1
IL_63653.1
  • Basepair signature:
  • History status: > 2 parents
  • Single bulged A (10)
  • Single bulged U (8)
  • Multiple bulged bases (7)
  • Single bulged C (5)
  • Single bulged G (3)
  • Major groove outside cWW, minor groove, intercalation pocket (1)
    		• 4148
    2
    • IL_90629.1
    		IL_90629.1
    • Basepair signature:
    • History status: > 2 parents
  • Isolated near basepair (3)
  • CA cWW (2)
  • Decoding loop with one bulged A (1)
  • Isolated non-canonical cWW with bulges (1)
  • Isolated cWH basepair (1)
    		• 6119
    3
    • IL_11363.1
    		IL_11363.1
    • Basepair signature:
    • History status: > 2 parents
  • Decoding loop related (5)
  • Single stack bend (2)
  • Stack and bulge (1)
    		• 531
    4
    • IL_14877.1
    		IL_14877.1
    • Basepair signature:
    • History status: > 2 parents
  • Tandem non-canonical cWW pairs (12)
    		• 830
    5
    • IL_45564.2
    		IL_45564.2
    • Basepair signature:
    • History status: Updated, 1 parent
  • Major groove platform (6)
    		• 524
    6
    • IL_69966.2
    		IL_69966.2
    • Basepair signature:
    • History status: Updated, 2 parents
  • Minor groove platform (2)
    		• 521
    7
    • IL_17030.2
    		IL_17030.2
    • Basepair signature:
    • History status: Updated, 2 parents
  • tSH-tHW-tHS (1)
    		• 1018
    8
    • IL_30798.1
    		IL_30798.1
    • Basepair signature:
    • History status: Exact match
  • Major groove platform; stack outside cWW (2)
    		• 614
    9
    • IL_29996.2
    		IL_29996.2
    • Basepair signature:
    • History status: Updated, 2 parents
  • UAA/GAN related (2)
  • Tandem non-canonical cWW pairs (2)
  • UAA/GAN variation (1)
  • Decoding loop related (1)
    		• 913
    10
    • IL_01643.1
    		IL_01643.1
    • Basepair signature:
    • History status: > 2 parents
  • Double sheared (3)
    		• 813
    11
    • IL_17977.1
    		IL_17977.1
    • Basepair signature:
    • History status: Exact match
  • Major groove minor groove platform; mini C-loop (4)
  • Major groove outside cWW, minor groove, intercalation pocket (2)
    		• 611
    12
    • IL_87158.1
    		IL_87158.1
    • Basepair signature:
    • History status: Exact match
  • 8x7 Sarcin-Ricin; G-bulge (2)
    		• 1511
    13
    • IL_33923.2
    		IL_33923.2
    • Basepair signature:
    • History status: Updated, 2 parents
  • Major groove platform with extra cWW (1)
    		• 711
    14
    • IL_33742.1
    		IL_33742.1
    • Basepair signature:
    • History status: Exact match
  • Isolated basepair with bulged bases (1)
  • Vitamin B12 Aptamer (1)
    		• 810
    15
    • IL_36534.1
    		IL_36534.1
    • Basepair signature:
    • History status: Exact match
    		129
    16
    • IL_47950.2
    		IL_47950.2
    • Basepair signature:
    • History status: Updated, 2 parents
    		79
    17
    • IL_26410.1
    		IL_26410.1
    • Basepair signature:
    • History status: Exact match
    		139
    18
    • IL_63717.1
    		IL_63717.1
    • Basepair signature:
    • History status: Exact match
    		98
    19
    • IL_29746.1
    		IL_29746.1
    • Basepair signature:
    • History status: > 2 parents
  • Isolated cWH basepair (3)
    		• 67
    20
    • IL_92741.1
    		IL_92741.1
    • Basepair signature:
    • History status: Exact match
  • tSH-tHW-tHS-cWW (2)
  • Other IL (1)
    		• 127
    21
    • IL_11167.1
    		IL_11167.1
    • Basepair signature:
    • History status: New id, 2 parents
    		147
    22
    • IL_26097.2
    		IL_26097.2
    • Basepair signature:
    • History status: Updated, 2 parents
    		117
    23
    • IL_58602.1
    		IL_58602.1
    • Basepair signature:
    • History status: > 2 parents
  • cWH basepair and non-canonical AC (2)
    		• 67
    24
    • IL_62089.1
    		IL_62089.1
    • Basepair signature:
    • History status: New id, 2 parents
    		57
    25
    • IL_82367.1
    		IL_82367.1
    • Basepair signature:
    • History status: > 2 parents
    		77
    26
    • IL_36381.2
    		IL_36381.2
    • Basepair signature:
    • History status: Updated, 2 parents
    		76
    27
    • IL_98756.1
    		IL_98756.1
    • Basepair signature:
    • History status: Exact match
  • Bacterial 5S Loop E (3)
    		• 186
    28
    • IL_39216.2
    		IL_39216.2
    • Basepair signature:
    • History status: Updated, 2 parents
  • Basepair outside cWW (2)
  • Stack outside cWW (1)
    		• 56
    29
    • IL_16628.1
    		IL_16628.1
    • Basepair signature:
    • History status: Exact match
    		106
    30
    • IL_23027.1
    		IL_23027.1
    • Basepair signature:
    • History status: New id, 2 parents
    		45
    31
    • IL_39526.1
    		IL_39526.1
    • Basepair signature: 09_cWW------cWW
    • History status: Exact match
    		95
    32
    • IL_65962.2
    		IL_65962.2
    • Basepair signature:
    • History status: Updated, 1 parent
  • Isolated tHS basepair with bulges (1)
    		• 65
    33
    • IL_21059.1
    		IL_21059.1
    • Basepair signature:
    • History status: > 2 parents
    		65
    34
    • IL_82768.1
    		IL_82768.1
    • Basepair signature:
    • History status: Exact match
  • Receptor of 11-nt loop-receptor motif (1)
    		• 94
    35
    • IL_70178.1
    		IL_70178.1
    • Basepair signature:
    • History status: New id, 2 parents
    		84
    36
    • IL_06484.1
    		IL_06484.1
    • Basepair signature:
    • History status: Exact match
    		104
    37
    • IL_78938.1
    		IL_78938.1
    • Basepair signature:
    • History status: Exact match
    		84
    38
    • IL_49609.1
    		IL_49609.1
    • Basepair signature:
    • History status: Exact match
    		104
    39
    • IL_84775.1
    		IL_84775.1
    • Basepair signature:
    • History status: New id, 2 parents
    		54
    40
    • IL_10326.1
    		IL_10326.1
    • Basepair signature:
    • History status: Exact match
    		113
    41
    • IL_55113.1
    		IL_55113.1
    • Basepair signature:
    • History status: Exact match
    		53
    42
    • IL_11419.1
    		IL_11419.1
    • Basepair signature:
    • History status: Exact match
    		43
    43
    • IL_97453.2
    		IL_97453.2
    • Basepair signature:
    • History status: Updated, 2 parents
  • Decoding loop related (1)
    		• 93
    44
    • IL_19669.1
    		IL_19669.1
    • Basepair signature:
    • History status: Exact match
  • Kink-turn (2)
    		• 123
    45
    • IL_87744.2
    		IL_87744.2
    • Basepair signature:
    • History status: Updated, 2 parents
    		73
    46
    • IL_78493.1
    		IL_78493.1
    • Basepair signature:
    • History status: Exact match
    		123
    47
    • IL_19801.1
    		IL_19801.1
    • Basepair signature:
    • History status: Exact match
    		103
    48
    • IL_48375.1
    		IL_48375.1
    • Basepair signature:
    • History status: New id, 2 parents
    		83
    49
    • IL_71700.1
    		IL_71700.1
    • Basepair signature:
    • History status: Exact match
  • Quadruple sheared (1)
    		• 123
    50
    • IL_12437.1
    		IL_12437.1
    • Basepair signature:
    • History status: Exact match
    		63
    51
    • IL_99336.1
    		IL_99336.1
    • Basepair signature:
    • History status: New id, 1 parent
    		63
    52
    • IL_61616.1
    		IL_61616.1
    • Basepair signature:
    • History status: Exact match
  • Kink-turn from U4 (2)
    		• 103
    53
    • IL_20796.2
    		IL_20796.2
    • Basepair signature:
    • History status: Updated, 2 parents
  • 180 degree turn (1)
    		• 53
    54
    • IL_53203.1
    		IL_53203.1
    • Basepair signature:
    • History status: Exact match
    		143
    55
    • IL_34635.1
    		IL_34635.1
    • Basepair signature:
    • History status: > 2 parents
    		73
    56
    • IL_41412.1
    		IL_41412.1
    • Basepair signature:
    • History status: Exact match
    		93
    57
    • IL_85104.1
    		IL_85104.1
    • Basepair signature:
    • History status: Exact match
    		113
    58
    • IL_76095.1
    		IL_76095.1
    • Basepair signature:
    • History status: Exact match
    		183
    59
    • IL_82563.1
    		IL_82563.1
    • Basepair signature: cWW-R-tWH-R-R-R-cWW
    • History status: Exact match
    		103
    60
    • IL_62718.1
    		IL_62718.1
    • Basepair signature: 11_cWW-tSH-tHW-tHH-cWW---cSH
    • History status: Exact match
    		112
    61
    • IL_03814.1
    		IL_03814.1
    • Basepair signature:
    • History status: Exact match
    		152
    62
    • IL_21500.1
    		IL_21500.1
    • Basepair signature:
    • History status: New id, 2 parents
    		62
    63
    • IL_43956.1
    		IL_43956.1
    • Basepair signature:
    • History status: New id, 2 parents
    		92
    64
    • IL_94744.1
    		IL_94744.1
    • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (1)
    		• 172
    65
    • IL_82854.1
    		IL_82854.1
    • Basepair signature:
    • History status: Exact match
    		132
    66
    • IL_57785.1
    		IL_57785.1
    • Basepair signature:
    • History status: Exact match
    		82
    67
    • IL_78483.1
    		IL_78483.1
    • Basepair signature:
    • History status: Exact match
    		112
    68
    • IL_06149.1
    		IL_06149.1
    • Basepair signature:
    • History status: New id, 2 parents
    		52
    69
    • IL_57870.1
    		IL_57870.1
    • Basepair signature: 14_cWW-tSS,cWH-cWH-cWW--tWH--cSS
    • History status: Exact match
    		142
    70
    • IL_64838.1
    		IL_64838.1
    • Basepair signature:
    • History status: Exact match
    		82
    71
    • IL_83664.1
    		IL_83664.1
    • Basepair signature:
    • History status: Exact match
    		182
    72
    • IL_20048.1
    		IL_20048.1
    • Basepair signature:
    • History status: Exact match
    		82
    73
    • IL_64979.1
    		IL_64979.1
    • Basepair signature:
    • History status: Exact match
  • tSH-tHW (1)
    		• 92
    74
    • IL_00906.1
    		IL_00906.1
    • Basepair signature:
    • History status: New id, 2 parents
    		52
    75
    • IL_26781.1
    		IL_26781.1
    • Basepair signature:
    • History status: Exact match
    		132
    76
    • IL_34405.1
    		IL_34405.1
    • Basepair signature:
    • History status: Exact match
    		122
    77
    • IL_82266.1
    		IL_82266.1
    • Basepair signature:
    • History status: Exact match
    		62
    78
    • IL_65768.1
    		IL_65768.1
    • Basepair signature:
    • History status: New id, 2 parents
    		142
    79
    • IL_09020.1
    		IL_09020.1
    • Basepair signature:
    • History status: Exact match
    		162
    80
    • IL_73748.1
    		IL_73748.1
    • Basepair signature:
    • History status: New id, 2 parents
    		92
    81
    • IL_74876.1
    		IL_74876.1
    • Basepair signature: cWW-tWH-L-R-tHS-cWW
    • History status: Exact match
    		102
    82
    • IL_90628.1
    		IL_90628.1
    • Basepair signature:
    • History status: New id, 2 parents
    		72
    83
    • IL_16360.1
    		IL_16360.1
    • Basepair signature:
    • History status: Exact match
    		122
    84
    • IL_09882.1
    		IL_09882.1
    • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW-tWH-tHS (2)
    		• 122
    85
    • IL_53918.1
    		IL_53918.1
    • Basepair signature:
    • History status: Exact match
    		62
    86
    • IL_62527.1
    		IL_62527.1
    • Basepair signature:
    • History status: Exact match
    		102
    87
    • IL_76474.1
    		IL_76474.1
    • Basepair signature:
    • History status: Exact match
    		131
    88
    • IL_35887.1
    		IL_35887.1
    • Basepair signature:
    • History status: New id, 1 parent
    		71
    89
    • IL_69395.1
    		IL_69395.1
    • Basepair signature:
    • History status: Exact match
    		101
    90
    • IL_86981.1
    		IL_86981.1
    • Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW
    • History status: Exact match
    		151
    91
    • IL_56170.1
    		IL_56170.1
    • Basepair signature:
    • History status: Exact match
    		131
    92
    • IL_76973.1
    		IL_76973.1
    • Basepair signature:
    • History status: Exact match
    		61
    93
    • IL_04040.1
    		IL_04040.1
    • Basepair signature:
    • History status: Exact match
    		91
    94
    • IL_22579.1
    		IL_22579.1
    • Basepair signature: cWW-L-R-R-R-R-L-cWW
    • History status: New id, 1 parent
    		101
    95
    • IL_69909.1
    		IL_69909.1
    • Basepair signature:
    • History status: New id, 1 parent
    		71
    96
    • IL_77549.1
    		IL_77549.1
    • Basepair signature:
    • History status: Exact match
    		121
    97
    • IL_95275.1
    		IL_95275.1
    • Basepair signature:
    • History status: Exact match
    		141
    98
    • IL_19417.1
    		IL_19417.1
    • Basepair signature:
    • History status: Exact match
    		81
    99
    • IL_83250.1
    		IL_83250.1
    • Basepair signature: cWW-tWH-R-R-R-cSH-cWW-cWW
    • History status: Exact match
    		111
    100
    • IL_05830.1
    		IL_05830.1
    • Basepair signature:
    • History status: Exact match
    		141
    101
    • IL_47295.1
    		IL_47295.1
    • Basepair signature:
    • History status: Exact match
    		111
    102
    • IL_87637.1
    		IL_87637.1
    • Basepair signature:
    • History status: Exact match
    		141
    103
    • IL_33041.1
    		IL_33041.1
    • Basepair signature:
    • History status: Exact match
    		71
    104
    • IL_57863.1
    		IL_57863.1
    • Basepair signature:
    • History status: Exact match
    		71
    105
    • IL_37596.1
    		IL_37596.1
    • Basepair signature:
    • History status: New id, 1 parent
    		51
    106
    • IL_63952.1
    		IL_63952.1
    • Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW
    • History status: Exact match
    		131
    107
    • IL_83485.1
    		IL_83485.1
    • Basepair signature:
    • History status: Exact match
    		131
    108
    • IL_12233.1
    		IL_12233.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW
    • History status: Exact match
    		141
    109
    • IL_33600.1
    		IL_33600.1
    • Basepair signature:
    • History status: Exact match
    		81
    110
    • IL_26241.1
    		IL_26241.1
    • Basepair signature: cWW-tHW-tHS-cWW-cWW
    • History status: Exact match
    		101
    111
    • IL_71076.1
    		IL_71076.1
    • Basepair signature:
    • History status: Exact match
    		101
    112
    • IL_87816.1
    		IL_87816.1
    • Basepair signature:
    • History status: Exact match
    		101
    113
    • IL_12278.1
    		IL_12278.1
    • Basepair signature:
    • History status: Exact match
    		91
    114
    • IL_98916.1
    		IL_98916.1
    • Basepair signature:
    • History status: Exact match
    		101
    115
    • IL_00209.1
    		IL_00209.1
    • Basepair signature:
    • History status: Exact match
    		121
    116
    • IL_39324.1
    		IL_39324.1
    • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW
    • History status: Exact match
    		181
    117
    • IL_84308.1
    		IL_84308.1
    • Basepair signature:
    • History status: Exact match
    		111
    118
    • IL_06499.1
    		IL_06499.1
    • Basepair signature:
    • History status: Exact match
    		81
    119
    • IL_88737.1
    		IL_88737.1
    • Basepair signature:
    • History status: Exact match
    		61
    120
    • IL_61032.1
    		IL_61032.1
    • Basepair signature:
    • History status: Exact match
    		121
    121
    • IL_81728.1
    		IL_81728.1
    • Basepair signature:
    • History status: Exact match
    		121
    122
    • IL_20775.1
    		IL_20775.1
    • Basepair signature: cWW-R-tHS-cWW
    • History status: Exact match
    		71
    123
    • IL_65519.1
    		IL_65519.1
    • Basepair signature:
    • History status: Exact match
    		101
    124
    • IL_84453.1
    		IL_84453.1
    • Basepair signature:
    • History status: Exact match
    		51
    125
    • IL_08744.1
    		IL_08744.1
    • Basepair signature:
    • History status: Exact match
    		71
    126
    • IL_50503.1
    		IL_50503.1
    • Basepair signature:
    • History status: Exact match
    		71
    127
    • IL_72861.1
    		IL_72861.1
    • Basepair signature:
    • History status: New id, 1 parent
    		71
    128
    • IL_90454.1
    		IL_90454.1
    • Basepair signature:
    • History status: Exact match
  • Symmetric double minor groove platform (1)
    		• 91
    129
    • IL_14812.1
    		IL_14812.1
    • Basepair signature:
    • History status: Exact match
    		121
    130
    • IL_41009.1
    		IL_41009.1
    • Basepair signature: cWW-L-L-L-tSS-tHW-L-R-cWW
    • History status: Exact match
    		111
    131
    • IL_26786.1
    		IL_26786.1
    • Basepair signature:
    • History status: Exact match
    		81
    132
    • IL_90498.1
    		IL_90498.1
    • Basepair signature:
    • History status: New id, 1 parent
    		101
    133
    • IL_02449.1
    		IL_02449.1
    • Basepair signature:
    • History status: Exact match
    		121
    134
    • IL_21031.1
    		IL_21031.1
    • Basepair signature:
    • History status: Exact match
    		121
    135
    • IL_09333.1
    		IL_09333.1
    • Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW
    • History status: Exact match
    		121
    136
    • IL_28626.1
    		IL_28626.1
    • Basepair signature:
    • History status: Exact match
    		141
    137
    • IL_53598.1
    		IL_53598.1
    • Basepair signature:
    • History status: Exact match
    		41
    138
    • IL_35361.1
    		IL_35361.1
    • Basepair signature:
    • History status: Exact match
    		131
    139
    • IL_62105.1
    		IL_62105.1
    • Basepair signature:
    • History status: New id, 1 parent
    		71
    140
    • IL_82472.1
    		IL_82472.1
    • Basepair signature:
    • History status: Exact match
    		131
    141
    • IL_02835.1
    		IL_02835.1
    • Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW
    • History status: Exact match
    		131
    142
    • IL_41791.1
    		IL_41791.1
    • Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW
    • History status: Exact match
    		111
    143
    • IL_67328.1
    		IL_67328.1
    • Basepair signature:
    • History status: Exact match
    		81
    144
    • IL_85679.1
    		IL_85679.1
    • Basepair signature:
    • History status: Exact match
    		131
    145
    • IL_29499.1
    		IL_29499.1
    • Basepair signature:
    • History status: Exact match
    		91
    146
    • IL_35496.1
    		IL_35496.1
    • Basepair signature:
    • History status: Exact match
    		81
    147
    • IL_03110.1
    		IL_03110.1
    • Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW
    • History status: Exact match
    		131
    148
    • IL_21254.1
    		IL_21254.1
    • Basepair signature: cWW-tWH-cWW-tHS-tSS-R-R-cWW
    • History status: Exact match
    		121
    149
    • IL_43316.1
    		IL_43316.1
    • Basepair signature: cWW-tSH-L-L-tHH-cWW
    • History status: Exact match
    		101
    150
    • IL_67805.1
    		IL_67805.1
    • Basepair signature:
    • History status: Exact match
    		81
    151
    • IL_86213.1
    		IL_86213.1
    • Basepair signature:
    • History status: Exact match
    		101

    Coloring options:


    Exact match 110; New id, 2 parents 13; > 2 parents 10; Updated, 2 parents 11; New id, 1 parent 8; Updated, 1 parent 2;

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