4GKK Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/A/12:22 | NA | NA |
| 2 | ➜ | 1/A/78:84 | NA | NA |
| 3 | ➜ | 1/A/152:157 | NA | NA |
| 4 | ➜ | 1/A/186:191 | NA | NA |
| 5 | ➜ | 1/A/207:211 | NA | NA |
| 6 | ➜ | 1/A/254:262 | NA | NA |
| 7 | ➜ | 1/A/291:296 | NA | NA |
| 8 | ➜ | 1/A/315:328 | NA | NA |
| 9 | ➜ | 1/A/337:342 | NA | NA |
| 10 | ➜ | 1/A/374:379 | NA | NA |
| 11 | ➜ | 1/A/414:419 | NA | NA |
| 12 | ➜ | 1/A/452:458 | NA | NA |
| 13 | ➜ | 1/A/505:510 | NA | NA |
| 14 | ➜ | 1/A/600:606 | NA | NA |
| 15 | ➜ | 1/A/672:681 | NA | NA |
| 16 | ➜ | 1/A/709:714 | NA | NA |
| 17 | ➜ | 1/A/769:779 | NA | NA |
| 18 | ➜ | 1/A/821:825 | NA | NA |
| 19 | ➜ | 1/A/839:844 | NA | NA |
| 20 | ➜ | 1/A/874:879 | NA | NA |
| 21 | ➜ | 1/A/940:949 | NA | NA |
| 22 | ➜ | 1/A/990:995 | NA | NA |
| 23 | ➜ | 1/A/1008:1013 | NA | NA |
| 24 | ➜ | 1/A/1058:1063 | NA | NA |
| 25 | ➜ | 1/A/1071:1078 | NA | NA |
| 26 | ➜ | 1/A/1116:1122 | NA | NA |
| 27 | ➜ | 1/A/1147:1152 | NA | NA |
| 28 | ➜ | 1/A/1246:1251 | NA | NA |
| 29 | ➜ | 1/A/1295:1304 | NA | NA |
| 30 | ➜ | 1/A/1337:1348 | NA | NA |
| 31 | ➜ | 1/A/1429:1434 | NA | NA |
| 32 | ➜ | 1/A/1492:1497 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/A/30:32,1/A/535:536 | NA | NA |
| 2 | ➜ | 1/A/44:45,1/A/391:393 | NA | NA |
| 3 | ➜ | 1/A/47:52,1/A/354:356 | NA | NA |
| 4 | ➜ | 1/A/54:56,1/A/351:352 | NA | NA |
| 5 | ➜ | 1/A/63:66,1/A/96:97 | NA | NA |
| 6 | ➜ | 1/A/67:69,1/A/93:95 | NA | NA |
| 7 | ➜ | 1/A/122:125,1/A/226:227 | NA | NA |
| 8 | ➜ | 1/A/126:130,1/A/222:225 | NA | NA |
| 9 | ➜ | 1/A/142:147,1/A/162:168 | NA | NA |
| 10 | ➜ | 1/A/180:182,1/A/195:197 | NA | NA |
| 11 | ➜ | 1/A/237:242,1/A/272:279 | NA | NA |
| 12 | ➜ | 1/A/244:247,1/A/269:270 | NA | NA |
| 13 | ➜ | 1/A/287:288,1/A/299:303 | NA | NA |
| 14 | ➜ | 1/A/362:364,1/A/387:388 | NA | NA |
| 15 | ➜ | 1/A/366:370,1/A/384:385 | NA | NA |
| 16 | ➜ | 1/A/370:371,1/A/382:384 | NA | NA |
| 17 | ➜ | 1/A/403:411,1/A/422:429 | NA | NA |
| 18 | ➜ | 1/A/440:444,1/A/467:472 | NA | NA |
| 19 | ➜ | 1/A/444:449,1/A/461:467 | NA | NA |
| 20 | ➜ | 1/A/487:494,1/A/523:524 | NA | NA |
| 21 | ➜ | 1/A/498:504,1/A/511:519 | NA | NA |
| 22 | ➜ | 1/A/552:558,1/A/857:858 | NA | NA |
| 23 | ➜ | 1/A/563:567,1/A/740:744 | NA | NA |
| 24 | ➜ | 1/A/577:579,1/A/627:628 | NA | NA |
| 25 | ➜ | 1/A/580:581,1/A/623:626 | NA | NA |
| 26 | ➜ | 1/A/588:595,1/A/611:616 | NA | NA |
| 27 | ➜ | 1/A/637:638,1/A/734:737 | NA | NA |
| 28 | ➜ | 1/A/640:641,1/A/730:732 | NA | NA |
| 29 | ➜ | 1/A/645:649,1/A/723:726 | NA | NA |
| 30 | ➜ | 1/A/656:661,1/A/695:700 | NA | NA |
| 31 | ➜ | 1/A/666:671,1/A/682:690 | NA | NA |
| 32 | ➜ | 1/A/757:761,1/A/787:788 | NA | NA |
| 33 | ➜ | 1/A/762:766,1/A/782:786 | NA | NA |
| 34 | ➜ | 1/A/864:871,1/A/882:887 | NA | NA |
| 35 | ➜ | 1/A/899:900,1/A/1375:1377 | NA | NA |
| 36 | ➜ | 1/A/902:904,1/A/1372:1373 | NA | NA |
| 37 | ➜ | 1/A/910:912,1/A/1362:1366 | NA | NA |
| 38 | ➜ | 1/A/930:931,1/A/1207:1209 | NA | NA |
| 39 | ➜ | 1/A/970:974,1/A/1026:1027 | NA | NA |
| 40 | ➜ | 1/A/1030:1032,1/A/1189:1190 | NA | NA |
| 41 | ➜ | 1/A/1034:1038,1/A/1185:1187 | NA | NA |
| 42 | ➜ | 1/A/1039:1040,1/A/1180:1184 | NA | NA |
| 43 | ➜ | 1/A/1042:1043,1/A/1176:1178 | NA | NA |
| 44 | ➜ | 1/A/1043:1045,1/A/1174:1176 | NA | NA |
| 45 | ➜ | 1/A/1106:1115,1/A/1123:1131 | NA | NA |
| 46 | ➜ | 1/A/1140:1143,1/A/1156:1162 | NA | NA |
| 47 | ➜ | 1/A/1228:1234,1/A/1265:1271 | NA | NA |
| 48 | ➜ | 1/A/1236:1239,1/A/1258:1263 | NA | NA |
| 49 | ➜ | 1/A/1240:1241,1/A/1255:1257 | NA | NA |
| 50 | ➜ | 1/A/1241:1243,1/A/1254:1255 | NA | NA |
| 51 | ➜ | 1/A/1284:1289,1/A/1310:1315 | NA | NA |
| 52 | ➜ | 1/A/1381:1383,1/A/1478:1481 | NA | NA |
| 53 | ➜ | 1/A/1383:1386,1/A/1474:1478 | NA | NA |
| 54 | ➜ | 1/A/1387:1389,1/A/1471:1473 | NA | NA |
| 55 | ➜ | 1/A/1389:1391,1/A/1468:1471 | NA | NA |
| 56 | ➜ | 1/A/1394:1396,1/A/1463:1465 | NA | NA |
| 57 | ➜ | 1/A/1398:1401,1/A/1458:1461 | NA | NA |
| 58 | ➜ | 1/A/1406:1408,1/A/1451:1453 | NA | NA |
| 59 | ➜ | 1/A/1413:1417,1/A/1443:1446 | NA | NA |
| 60 | ➜ | 1/A/1417:1419,1/A/1441:1443 | NA | NA |
| 61 | ➜ | 1/A/1422:1427,1/A/1436:1438 | NA | NA |
Problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/A/809:812,1/A/834:838,1/A/845:851 | NA | NA |
| 2 | ➜ | 1/A/913:916,1/A/1325:1331,1/A/1354:1361 | NA | NA |
| 3 | ➜ | 1/A/920:923,1/A/1216:1218,1/A/1318:1321 | NA | NA |
| 4 | ➜ | 1/A/932:939,1/A/950:961,1/A/1202:1206 | NA | NA |
| 5 | ➜ | 1/A/967:970,1/A/1027:1029,1/A/1191:1196 | NA | NA |
| 6 | ➜ | 1/A/1045:1050,1/A/1089:1095,1/A/1168:1174 | NA | NA |
| 7 | ➜ | 1/A/1098:1100,1/A/1137:1140,1/A/1162:1165 | NA | NA |
| 8 | ➜ | 1/A/1218:1222,1/A/1277:1284,1/A/1315:1318 | NA | NA |
Problematic loops
No problematic loops
Coloring options: