7SYI Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7SYI_001 | 1/2/7:17 | No text annotation Not in a motif group | geometric HL_4V88_186 HL_89881.2 | |
| HL_7SYI_002 | 1/2/69:80 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_7SYI_003 | 1/2/156:162 | No text annotation Not in a motif group | geometric HL_7A0S_011 HL_75407.1 | |
| HL_7SYI_004 | 1/2/196:203 | No text annotation Not in a motif group | ||
| HL_7SYI_005 | 1/2/288:295 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_7SYI_007 | 1/2/377:387 | No text annotation Not in a motif group | ||
| HL_7SYI_008 | 1/2/416:421 | No text annotation Not in a motif group | geometric HL_4V88_194 HL_50142.2 | |
| HL_7SYI_009 | 1/2/441:452 | No text annotation Not in a motif group | geometric HL_4V88_195 HL_84288.1 | |
| HL_7SYI_010 | 1/2/462:467 | UNCG Not in a motif group | geometric HL_4LFB_009 HL_03562.2 | |
| HL_7SYI_011 | 1/2/498:504 | No text annotation Not in a motif group | geometric HL_7A0S_011 HL_75407.1 | |
| HL_7SYI_012 | 1/2/534:550 | No text annotation Not in a motif group | ||
| HL_7SYI_013 | 1/2/569:581 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_7SYI_014 | 1/2/618:623 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_7SYI_016 | 1/2/820:828 | No text annotation Not in a motif group | geometric HL_4V88_203 HL_46766.2 | |
| HL_7SYI_018 | 1/2/884:902 | No text annotation Not in a motif group | ||
| HL_7SYI_019 | 1/2/957:966 | No text annotation Not in a motif group | geometric HL_4LFB_015 HL_12326.1 | |
| HL_7SYI_020 | 1/2/994:999 | Other HL Not in a motif group | geometric HL_1G1X_005 HL_87030.2 | |
| HL_7SYI_021 | 1/2/1054:1064 | No text annotation Not in a motif group | geometric HL_4V88_208 HL_12326.1 | |
| HL_7SYI_022 | 1/2/1113:1120 | No text annotation Not in a motif group | ||
| HL_7SYI_023 | 1/2/1141:1146 | Other HL Not in a motif group | geometric HL_4V88_210 HL_42097.2 | |
| HL_7SYI_024 | 1/2/1178:1183 | GNRA Not in a motif group | geometric HL_1Q96_001 HL_42097.2 | |
| HL_7SYI_025 | 1/2/1245:1254 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_75407.1 | |
| HL_7SYI_026 | 1/2/1294:1305 | No text annotation Not in a motif group | ||
| HL_7SYI_027 | 1/2/1353:1358 | GNRA Not in a motif group | geometric HL_5J7L_027 HL_42097.2 | |
| HL_7SYI_028 | 1/2/1366:1373 | No text annotation Not in a motif group | geometric HL_4V88_215 HL_71554.2 | |
| HL_7SYI_030 | 1/2/1460:1466 | No text annotation Not in a motif group | geometric HL_5J7L_179 HL_42097.2 | |
| HL_7SYI_031 | 1/2/1565:1570 | GNRA Not in a motif group | geometric HL_4V9F_017 HL_42097.2 | |
| HL_7SYI_032 | 1/2/1614:1625 | No text annotation Not in a motif group | homologous HL_8C3A_224 HL_22554.1 | |
| HL_7SYI_033 | 1/2/1658:1666 | No text annotation Not in a motif group | geometric HL_4V88_220 HL_60812.1 | |
| HL_7SYI_035 | 1/2/1846:1853 | No text annotation Not in a motif group | ||
| HL_7SYI_036 | 1/z/161:166 | No text annotation Not in a motif group | ||
| HL_7SYI_038 | 1/z/232:235 | No text annotation Not in a motif group | ||
| HL_7SYI_039 | 1/z/261:272 | No text annotation Not in a motif group | ||
| HL_7SYI_040 | 1/z/280:283 | No text annotation Not in a motif group | ||
| HL_7SYI_041 | 1/z/293:300 | No text annotation Not in a motif group | ||
| HL_7SYI_042 | 1/z/304:313 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7SYI_006 | No text annotation | ||
| HL_7SYI_015 | No text annotation | ||
| HL_7SYI_017 | No text annotation | ||
| HL_7SYI_029 | No text annotation | ||
| HL_7SYI_034 | No text annotation | ||
| HL_7SYI_037 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7SYI_001 | 1/2/23:25, 1/2/649:651 | No text annotation Not in a motif group | geometric IL_3MEI_002 IL_95997.1 | |
| IL_7SYI_002 | 1/2/34:36, 1/2/519:521 | No text annotation Not in a motif group | geometric IL_5C5W_002 IL_95997.1 | |
| IL_7SYI_003 | 1/2/37:40, 1/2/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_7SYI_004 | 1/2/41:47, 1/2/479:481 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_7SYI_005 | 1/2/49:51, 1/2/476:477 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_7SYI_006 | 1/2/56:62, 1/2/86:89 | No text annotation Not in a motif group | ||
| IL_7SYI_007 | 1/2/63:68, 1/2/81:85 | No text annotation Not in a motif group | geometric IL_4V88_390 IL_77691.1 | |
| IL_7SYI_008 | 1/2/108:112, 1/2/349:353 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_7SYI_009 | 1/2/112:115, 1/2/348:349 | Multiple bulged bases Not in a motif group | geometric IL_5XWP_001 IL_44546.1 | |
| IL_7SYI_010 | 1/2/116:121, 1/2/343:347 | No text annotation Not in a motif group | geometric IL_4V88_393 IL_64181.2 | |
| IL_7SYI_012 | 1/2/145:151, 1/2/167:174 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4V88_394 IL_80604.2 | |
| IL_7SYI_013 | 1/2/152:155, 1/2/163:166 | No text annotation Not in a motif group | geometric IL_6AZ4_001 IL_69145.1 | |
| IL_7SYI_014 | 1/2/188:192, 1/2/207:211 | Triple sheared Not in a motif group | geometric IL_7A0S_056 IL_41507.1 | |
| IL_7SYI_015 | 1/2/216:219, 1/2/302:309 | No text annotation Not in a motif group | ||
| IL_7SYI_017 | 1/2/312:314, 1/2/336:337 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.3 | |
| IL_7SYI_018 | 1/2/317:319, 1/2/332:333 | Single stack bend Not in a motif group | geometric IL_5TBW_009 IL_76488.2 | |
| IL_7SYI_019 | 1/2/320:322, 1/2/330:331 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_7SYI_020 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_5J7L_014 IL_45067.2 | |
| IL_7SYI_021 | 1/2/366:373, 1/2/391:394 | No text annotation Not in a motif group | ||
| IL_7SYI_022 | 1/2/411:413, 1/2/424:429 | No text annotation Not in a motif group | geometric IL_4V88_404 IL_11347.1 | |
| IL_7SYI_023 | 1/2/436:439, 1/2/454:457 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.3 | |
| IL_7SYI_024 | 1/2/459:461, 1/2/468:470 | Isolated near basepair Not in a motif group | geometric IL_3NJ7_003 IL_52767.2 | |
| IL_7SYI_025 | 1/2/487:489, 1/2/511:512 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.14 | |
| IL_7SYI_026 | 1/2/491:495, 1/2/508:509 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_7SYI_027 | 1/2/495:496, 1/2/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.3 | |
| IL_7SYI_028 | 1/2/529:531, 1/2/553:556 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_7SYI_029 | 1/2/563:565, 1/2/585:592 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_7SYI_030 | 1/2/565:569, 1/2/581:585 | No text annotation Not in a motif group | geometric IL_4V88_422 IL_05145.2 | |
| IL_7SYI_031 | 1/2/598:608, 1/2/635:638 | No text annotation Not in a motif group | ||
| IL_7SYI_032 | 1/2/611:617, 1/2/624:632 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_7SYI_033 | 1/2/663:665, 1/2/1162:1164 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_7SYI_034 | 1/2/665:671, 1/2/1161:1162 | No text annotation Not in a motif group | geometric IL_6CZR_134 IL_69996.1 | |
| IL_7SYI_035 | 1/2/673:675, 1/2/1030:1032 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_95997.1 | |
| IL_7SYI_036 | 1/2/676:680, 1/2/1025:1029 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_418 IL_17136.1 | |
| IL_7SYI_038 | 1/2/750:754, 1/2/790:793 | No text annotation Not in a motif group | ||
| IL_7SYI_039 | 1/2/802:803, 1/2/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4PDB_002 IL_09061.6 | |
| IL_7SYI_040 | 1/2/805:807, 1/2/856:858 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_95997.1 | |
| IL_7SYI_041 | 1/2/807:815, 1/2/849:856 | No text annotation Not in a motif group | geometric IL_4V88_425 IL_69091.1 | |
| IL_7SYI_042 | 1/2/874:876, 1/2/910:912 | No text annotation Not in a motif group | geometric IL_5AOX_001 IL_95997.1 | |
| IL_7SYI_043 | 1/2/876:879, 1/2/907:910 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.3 | |
| IL_7SYI_044 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_6N5P_003 IL_50694.2 | |
| IL_7SYI_045 | 1/2/924:927, 1/2/1014:1018 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.3 | |
| IL_7SYI_046 | 1/2/927:929, 1/2/1013:1014 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_7SYI_047 | 1/2/929:931, 1/2/1010:1013 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_7SYI_048 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.3 | |
| IL_7SYI_049 | 1/2/942:945, 1/2/981:984 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.3 | |
| IL_7SYI_050 | 1/2/951:956, 1/2/967:975 | Kink-turn Not in a motif group | geometric IL_4LFB_031 IL_37722.1 | |
| IL_7SYI_051 | 1/2/1041:1047, 1/2/1071:1074 | No text annotation Not in a motif group | ||
| IL_7SYI_052 | 1/2/1047:1051, 1/2/1067:1071 | tSH-tHW-tHS Not in a motif group | geometric IL_6CZR_145 IL_17136.1 | |
| IL_7SYI_053 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation Not in a motif group | geometric IL_4V88_437 IL_19557.3 | |
| IL_7SYI_054 | 1/2/1098:1103, 1/2/1129:1134 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_7SYI_055 | 1/2/1108:1111, 1/2/1122:1124 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_411 IL_46796.1 | |
| IL_7SYI_056 | 1/2/1168:1175, 1/2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_4LFB_034 IL_24606.2 | |
| IL_7SYI_057 | 1/2/1213:1217, 1/2/1681:1686 | No text annotation Not in a motif group | ||
| IL_7SYI_058 | 1/2/1230:1232, 1/2/1526:1528 | No text annotation Not in a motif group | geometric IL_5MWI_004 IL_95997.1 | |
| IL_7SYI_059 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform Not in a motif group | geometric IL_7A0S_028 IL_42622.2 | |
| IL_7SYI_060 | 1/2/1269:1273, 1/2/1510:1513 | No text annotation Not in a motif group | ||
| IL_7SYI_061 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U Not in a motif group | geometric IL_4V88_449 IL_83039.14 | |
| IL_7SYI_062 | 1/2/1328:1335, 1/2/1492:1501 | No text annotation Not in a motif group | ||
| IL_7SYI_063 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A Not in a motif group | geometric IL_4V88_452 IL_37497.3 | |
| IL_7SYI_064 | 1/2/1338:1340, 1/2/1487:1488 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_7SYI_065 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_453 IL_51629.2 | |
| IL_7SYI_066 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform Not in a motif group | geometric IL_5ML7_009 IL_42622.2 | |
| IL_7SYI_067 | 1/2/1395:1399, 1/2/1447:1450 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1L9A_005 IL_30621.3 | |
| IL_7SYI_068 | 1/2/1402:1406, 1/2/1440:1444 | No text annotation Not in a motif group | ||
| IL_7SYI_069 | 1/2/1412:1413, 1/2/1427:1429 | No text annotation Not in a motif group | ||
| IL_7SYI_070 | 1/2/1537:1539, 1/2/1594:1596 | CC cWW Not in a motif group | geometric IL_4J39_001 IL_95997.1 | |
| IL_7SYI_071 | 1/2/1550:1558, 1/2/1577:1582 | No text annotation Not in a motif group | ||
| IL_7SYI_072 | 1/2/1559:1562, 1/2/1573:1576 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.3 | |
| IL_7SYI_073 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation Not in a motif group | ||
| IL_7SYI_074 | 1/2/1702:1706, 1/2/1828:1833 | No text annotation Not in a motif group | ||
| IL_7SYI_075 | 1/2/1706:1708, 1/2/1826:1828 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_95997.1 | |
| IL_7SYI_076 | 1/2/1708:1712, 1/2/1821:1826 | No text annotation Not in a motif group | ||
| IL_7SYI_077 | 1/2/1713:1720, 1/2/1813:1820 | No text annotation Not in a motif group | ||
| IL_7SYI_078 | 1/2/1720:1722, 1/2/1812:1813 | No text annotation Not in a motif group | ||
| IL_7SYI_079 | 1/2/1729:1731, 1/2/1803:1805 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_7SYI_080 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared Not in a motif group | geometric IL_3D0U_002 IL_09705.9 | |
| IL_7SYI_081 | 1/2/1739:1741, 1/2/1793:1795 | UU cWW water inserted Not in a motif group | geometric IL_4E48_002 IL_95997.1 | |
| IL_7SYI_082 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared Not in a motif group | geometric IL_7RQB_075 IL_56467.8 | |
| IL_7SYI_083 | 1/2/1750:1751, 1/2/1782:1784 | No text annotation Not in a motif group | ||
| IL_7SYI_084 | 1/2/1751:1753, 1/2/1780:1782 | No text annotation Not in a motif group | ||
| IL_7SYI_085 | 1/2/1753:1754, 1/2/1778:1780 | No text annotation Not in a motif group | ||
| IL_7SYI_086 | 1/z/135:138, 1/z/286:289 | No text annotation Not in a motif group | ||
| IL_7SYI_087 | 1/z/149:150, 1/z/242:244 | No text annotation Not in a motif group | ||
| IL_7SYI_088 | 1/z/255:261, 1/z/272:277 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7SYI_011 | No text annotation | ||
| IL_7SYI_016 | No text annotation | ||
| IL_7SYI_037 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7SYI_001 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation Not in a motif group | ||
| J3_7SYI_002 | 1/2/682:684, 1/2/918:922, 1/2/1022:1023 | No text annotation Not in a motif group | ||
| J3_7SYI_003 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation Not in a motif group | homologous J3_8C3A_035 NA | |
| J3_7SYI_004 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation Not in a motif group | ||
| J3_7SYI_005 | 1/2/1094:1096, 1/2/1136:1140, 1/2/1147:1151 | No text annotation Not in a motif group | ||
| J3_7SYI_006 | 1/2/1218:1222, 1/2/1644:1651, 1/2/1673:1680 | No text annotation Not in a motif group | ||
| J3_7SYI_007 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_7SYI_008 | 1/2/1237:1244, 1/2/1255:1266, 1/2/1516:1520 | No text annotation Not in a motif group | ||
| J3_7SYI_009 | 1/2/1273:1277, 1/2/1320:1324, 1/2/1504:1510 | No text annotation Not in a motif group | ||
| J3_7SYI_010 | 1/2/1340:1345, 1/2/1384:1389, 1/2/1481:1487 | No text annotation Not in a motif group | ||
| J3_7SYI_011 | 1/2/1350:1351, 1/2/1360:1363, 1/2/1375:1379 | No text annotation Not in a motif group | ||
| J3_7SYI_012 | 1/2/1391:1395, 1/2/1450:1456, 1/2/1470:1479 | No text annotation Not in a motif group | ||
| J3_7SYI_013 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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