7SYM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7SYM_001 | 1/2/7:17 | No text annotation Not in a motif group | geometric HL_4V88_186 HL_89881.2 | |
| HL_7SYM_002 | 1/2/69:80 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_7SYM_003 | 1/2/156:162 | No text annotation Not in a motif group | homologous HL_8C3A_194 HL_76539.2 | |
| HL_7SYM_004 | 1/2/196:203 | No text annotation Not in a motif group | ||
| HL_7SYM_005 | 1/2/288:295 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_7SYM_007 | 1/2/377:387 | No text annotation Not in a motif group | geometric HL_6UFM_001 HL_09136.1 | |
| HL_7SYM_008 | 1/2/416:421 | No text annotation Not in a motif group | geometric HL_4V88_194 HL_50142.2 | |
| HL_7SYM_009 | 1/2/441:452 | No text annotation Not in a motif group | geometric HL_4V88_195 HL_84288.1 | |
| HL_7SYM_010 | 1/2/462:467 | No text annotation Not in a motif group | geometric HL_6CZR_080 HL_03562.2 | |
| HL_7SYM_011 | 1/2/498:504 | No text annotation Not in a motif group | geometric HL_7A0S_011 HL_75407.1 | |
| HL_7SYM_012 | 1/2/537:546 | No text annotation Not in a motif group | ||
| HL_7SYM_013 | 1/2/569:581 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_7SYM_014 | 1/2/618:623 | Other HL Not in a motif group | geometric HL_4V88_200 HL_53845.1 | |
| HL_7SYM_016 | 1/2/819:829 | No text annotation Not in a motif group | ||
| HL_7SYM_018 | 1/2/884:902 | No text annotation Not in a motif group | geometric HL_6ORD_035 HL_14843.1 | |
| HL_7SYM_019 | 1/2/957:966 | No text annotation Not in a motif group | homologous HL_8C3A_211 HL_12326.1 | |
| HL_7SYM_020 | 1/2/994:999 | Other HL Not in a motif group | geometric HL_4LFB_016 HL_87030.2 | |
| HL_7SYM_021 | 1/2/1054:1064 | No text annotation Not in a motif group | geometric HL_6CZR_088 HL_12326.1 | |
| HL_7SYM_022 | 1/2/1113:1120 | No text annotation Not in a motif group | geometric HL_4GXY_003 HL_96598.1 | |
| HL_7SYM_023 | 1/2/1141:1146 | Other HL Not in a motif group | geometric HL_4V88_210 HL_42097.1 | |
| HL_7SYM_024 | 1/2/1178:1183 | Other HL Not in a motif group | geometric HL_5J7L_180 HL_42097.1 | |
| HL_7SYM_025 | 1/2/1245:1254 | No text annotation Not in a motif group | geometric HL_4V88_212 HL_73530.2 | |
| HL_7SYM_026 | 1/2/1295:1304 | No text annotation Not in a motif group | homologous HL_8C3A_218 HL_53597.2 | |
| HL_7SYM_027 | 1/2/1353:1359 | No text annotation Not in a motif group | ||
| HL_7SYM_028 | 1/2/1366:1373 | No text annotation Not in a motif group | geometric HL_4V88_215 HL_71554.2 | |
| HL_7SYM_030 | 1/2/1460:1466 | Other HL Not in a motif group | geometric HL_2CZJ_007 HL_53845.1 | |
| HL_7SYM_031 | 1/2/1565:1570 | GNRA Not in a motif group | geometric HL_3E5C_002 HL_42097.1 | |
| HL_7SYM_032 | 1/2/1614:1625 | No text annotation Not in a motif group | geometric HL_4V88_219 HL_22554.1 | |
| HL_7SYM_033 | 1/2/1658:1666 | No text annotation Not in a motif group | geometric HL_4V88_220 HL_60812.1 | |
| HL_7SYM_035 | 1/2/1846:1853 | No text annotation Not in a motif group | ||
| HL_7SYM_036 | 1/z/161:166 | No text annotation Not in a motif group | ||
| HL_7SYM_038 | 1/z/232:235 | No text annotation Not in a motif group | ||
| HL_7SYM_039 | 1/z/261:272 | No text annotation Not in a motif group | ||
| HL_7SYM_040 | 1/z/280:283 | No text annotation Not in a motif group | ||
| HL_7SYM_041 | 1/z/293:300 | No text annotation Not in a motif group | ||
| HL_7SYM_042 | 1/z/304:313 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7SYM_006 | No text annotation | ||
| HL_7SYM_015 | No text annotation | ||
| HL_7SYM_017 | No text annotation | ||
| HL_7SYM_029 | No text annotation | ||
| HL_7SYM_034 | No text annotation | ||
| HL_7SYM_037 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7SYM_001 | 1/2/23:25, 1/2/649:651 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_7SYM_002 | 1/2/34:36, 1/2/519:521 | No text annotation Not in a motif group | geometric IL_6IA2_002 IL_95997.1 | |
| IL_7SYM_003 | 1/2/37:40, 1/2/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_7SYM_004 | 1/2/41:47, 1/2/479:481 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_7SYM_005 | 1/2/49:51, 1/2/476:477 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_7SYM_006 | 1/2/63:68, 1/2/81:85 | No text annotation Not in a motif group | geometric IL_4V88_390 IL_77691.1 | |
| IL_7SYM_007 | 1/2/108:110, 1/2/351:353 | No text annotation Not in a motif group | geometric IL_1T0E_002 IL_95997.1 | |
| IL_7SYM_008 | 1/2/110:112, 1/2/349:351 | No text annotation Not in a motif group | geometric IL_4M4O_001 IL_95997.1 | |
| IL_7SYM_009 | 1/2/112:115, 1/2/348:349 | Multiple bulged bases Not in a motif group | geometric IL_5WLH_001 IL_44546.1 | |
| IL_7SYM_010 | 1/2/116:121, 1/2/343:347 | No text annotation Not in a motif group | geometric IL_4V88_393 IL_64181.2 | |
| IL_7SYM_012 | 1/2/145:151, 1/2/167:174 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4V88_394 IL_80604.2 | |
| IL_7SYM_013 | 1/2/152:155, 1/2/163:166 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_7SYM_014 | 1/2/188:192, 1/2/207:211 | Triple sheared Not in a motif group | geometric IL_7A0S_056 IL_41507.1 | |
| IL_7SYM_016 | 1/2/312:314, 1/2/336:337 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.2 | |
| IL_7SYM_017 | 1/2/316:319, 1/2/332:334 | No text annotation Not in a motif group | ||
| IL_7SYM_018 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_4V88_402 IL_45067.2 | |
| IL_7SYM_019 | 1/2/366:371, 1/2/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_7SYM_020 | 1/2/411:413, 1/2/424:429 | No text annotation Not in a motif group | geometric IL_4V88_404 IL_11347.1 | |
| IL_7SYM_021 | 1/2/436:439, 1/2/454:457 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1L9A_005 IL_30621.2 | |
| IL_7SYM_022 | 1/2/459:461, 1/2/468:470 | Isolated near basepair Not in a motif group | geometric IL_3NJ7_004 IL_52767.2 | |
| IL_7SYM_023 | 1/2/487:489, 1/2/511:512 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.13 | |
| IL_7SYM_024 | 1/2/491:495, 1/2/508:509 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_7SYM_025 | 1/2/495:496, 1/2/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_7SYM_026 | 1/2/529:532, 1/2/552:557 | No text annotation Not in a motif group | ||
| IL_7SYM_027 | 1/2/534:537, 1/2/546:550 | No text annotation Not in a motif group | ||
| IL_7SYM_028 | 1/2/563:565, 1/2/585:592 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_7SYM_029 | 1/2/566:569, 1/2/581:584 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.2 | |
| IL_7SYM_030 | 1/2/596:608, 1/2/635:641 | No text annotation Not in a motif group | ||
| IL_7SYM_031 | 1/2/611:617, 1/2/624:632 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_7SYM_032 | 1/2/663:665, 1/2/1162:1164 | No text annotation Not in a motif group | geometric IL_6IA2_005 IL_95997.1 | |
| IL_7SYM_033 | 1/2/665:671, 1/2/1161:1162 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1NBS_009 IL_69996.1 | |
| IL_7SYM_034 | 1/2/673:675, 1/2/1030:1032 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_7SYM_035 | 1/2/676:682, 1/2/1023:1029 | No text annotation Not in a motif group | ||
| IL_7SYM_036 | 1/2/692:696, 1/2/730:734 | No text annotation Not in a motif group | ||
| IL_7SYM_038 | 1/2/750:754, 1/2/790:793 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_7SYM_039 | 1/2/802:805, 1/2/858:863 | No text annotation Not in a motif group | ||
| IL_7SYM_040 | 1/2/805:807, 1/2/856:858 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_95997.1 | |
| IL_7SYM_041 | 1/2/807:815, 1/2/849:856 | No text annotation Not in a motif group | geometric IL_4V88_425 IL_69091.1 | |
| IL_7SYM_042 | 1/2/874:876, 1/2/910:912 | UU cWW water inserted Not in a motif group | geometric IL_4E48_002 IL_95997.1 | |
| IL_7SYM_043 | 1/2/876:879, 1/2/907:910 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_7SYM_044 | 1/2/879:881, 1/2/905:907 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_047 IL_52767.2 | |
| IL_7SYM_045 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_6N5P_003 IL_50694.2 | |
| IL_7SYM_046 | 1/2/924:927, 1/2/1014:1018 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_7SYM_047 | 1/2/927:931, 1/2/1010:1014 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_7SYM_048 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_7SYM_049 | 1/2/942:945, 1/2/981:984 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_432 IL_30621.2 | |
| IL_7SYM_050 | 1/2/952:956, 1/2/967:974 | Kink-turn Not in a motif group | geometric IL_4V88_434 IL_45067.2 | |
| IL_7SYM_051 | 1/2/1042:1051, 1/2/1067:1073 | No text annotation Not in a motif group | ||
| IL_7SYM_052 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation Not in a motif group | geometric IL_4V88_437 IL_19557.3 | |
| IL_7SYM_053 | 1/2/1098:1103, 1/2/1129:1134 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_7SYM_054 | 1/2/1108:1111, 1/2/1122:1124 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_7SYM_055 | 1/2/1168:1175, 1/2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_4LFB_034 IL_24606.2 | |
| IL_7SYM_056 | 1/2/1214:1217, 1/2/1681:1685 | C-loop Not in a motif group | geometric IL_4V88_443 IL_63596.6 | |
| IL_7SYM_057 | 1/2/1230:1232, 1/2/1526:1528 | No text annotation Not in a motif group | geometric IL_4V88_444 IL_95997.1 | |
| IL_7SYM_058 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform Not in a motif group | geometric IL_5ML7_009 IL_42622.2 | |
| IL_7SYM_059 | 1/2/1269:1273, 1/2/1510:1513 | No text annotation Not in a motif group | ||
| IL_7SYM_060 | 1/2/1281:1287, 1/2/1314:1316 | No text annotation Not in a motif group | ||
| IL_7SYM_061 | 1/2/1287:1294, 1/2/1305:1314 | No text annotation Not in a motif group | ||
| IL_7SYM_062 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U Not in a motif group | geometric IL_3MEI_001 IL_83039.13 | |
| IL_7SYM_063 | 1/2/1329:1333, 1/2/1498:1500 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_7SYM_064 | 1/2/1333:1335, 1/2/1492:1498 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_451 IL_92788.2 | |
| IL_7SYM_065 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A Not in a motif group | geometric IL_4WF9_006 IL_37497.2 | |
| IL_7SYM_066 | 1/2/1347:1349, 1/2/1380:1382 | Isolated cWH basepair Not in a motif group | geometric IL_4WF9_045 IL_51629.2 | |
| IL_7SYM_067 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_42622.2 | |
| IL_7SYM_068 | 1/2/1395:1399, 1/2/1447:1450 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_7SYM_069 | 1/2/1402:1405, 1/2/1441:1444 | Minor groove platform Not in a motif group | geometric IL_4V88_456 IL_76458.1 | |
| IL_7SYM_070 | 1/2/1412:1413, 1/2/1427:1429 | No text annotation Not in a motif group | ||
| IL_7SYM_071 | 1/2/1537:1539, 1/2/1594:1596 | No text annotation Not in a motif group | geometric IL_4E48_005 IL_95997.1 | |
| IL_7SYM_072 | 1/2/1550:1558, 1/2/1577:1582 | No text annotation Not in a motif group | geometric IL_4LFB_052 IL_84205.1 | |
| IL_7SYM_073 | 1/2/1559:1563, 1/2/1572:1576 | No text annotation Not in a motif group | ||
| IL_7SYM_074 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation Not in a motif group | ||
| IL_7SYM_075 | 1/2/1702:1708, 1/2/1826:1833 | No text annotation Not in a motif group | ||
| IL_7SYM_076 | 1/2/1708:1711, 1/2/1822:1826 | No text annotation Not in a motif group | ||
| IL_7SYM_077 | 1/2/1713:1716, 1/2/1817:1820 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_7SYM_078 | 1/2/1717:1723, 1/2/1811:1816 | No text annotation Not in a motif group | ||
| IL_7SYM_079 | 1/2/1729:1731, 1/2/1803:1805 | No text annotation Not in a motif group | geometric IL_3GM7_004 IL_95997.1 | |
| IL_7SYM_080 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.9 | |
| IL_7SYM_081 | 1/2/1739:1741, 1/2/1793:1795 | UU cWW water inserted Not in a motif group | geometric IL_4E48_002 IL_95997.1 | |
| IL_7SYM_082 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared Not in a motif group | geometric IL_7RQB_075 IL_56467.8 | |
| IL_7SYM_083 | 1/2/1750:1751, 1/2/1782:1784 | No text annotation Not in a motif group | ||
| IL_7SYM_084 | 1/2/1751:1753, 1/2/1780:1782 | No text annotation Not in a motif group | ||
| IL_7SYM_085 | 1/2/1753:1754, 1/2/1778:1780 | No text annotation Not in a motif group | ||
| IL_7SYM_086 | 1/z/135:137, 1/z/287:289 | No text annotation Not in a motif group | ||
| IL_7SYM_087 | 1/z/149:150, 1/z/242:244 | No text annotation Not in a motif group | ||
| IL_7SYM_088 | 1/z/255:261, 1/z/272:277 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7SYM_011 | No text annotation | ||
| IL_7SYM_015 | No text annotation | ||
| IL_7SYM_037 | Minor groove platform |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7SYM_001 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation Not in a motif group | ||
| J3_7SYM_002 | 1/2/682:685, 1/2/917:922, 1/2/1022:1023 | No text annotation Not in a motif group | ||
| J3_7SYM_003 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation Not in a motif group | homologous J3_8C3A_035 NA | |
| J3_7SYM_004 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation Not in a motif group | ||
| J3_7SYM_005 | 1/2/1094:1097, 1/2/1135:1140, 1/2/1147:1151 | No text annotation Not in a motif group | ||
| J3_7SYM_006 | 1/2/1218:1221, 1/2/1645:1651, 1/2/1673:1680 | No text annotation Not in a motif group | homologous J3_8C3A_038 NA | |
| J3_7SYM_007 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation Not in a motif group | ||
| J3_7SYM_008 | 1/2/1237:1245, 1/2/1254:1266, 1/2/1516:1520 | No text annotation Not in a motif group | ||
| J3_7SYM_009 | 1/2/1273:1277, 1/2/1320:1324, 1/2/1504:1510 | No text annotation Not in a motif group | ||
| J3_7SYM_010 | 1/2/1340:1347, 1/2/1382:1389, 1/2/1481:1486 | No text annotation Not in a motif group | ||
| J3_7SYM_011 | 1/2/1350:1353, 1/2/1359:1363, 1/2/1375:1379 | No text annotation Not in a motif group | ||
| J3_7SYM_012 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation Not in a motif group | homologous J3_8C3A_044 NA |
Problematic loops
No problematic loops
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