Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7SYM_0011/2/7:17No text annotation
Not in a motif group
geometric
HL_4V88_186
HL_89881.2
HL_7SYM_0021/2/69:80No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_7SYM_0031/2/156:162No text annotation
Not in a motif group
homologous
HL_8C3A_194
HL_76539.4
HL_7SYM_0041/2/196:203No text annotation
Not in a motif group
HL_7SYM_0051/2/288:295No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.4
HL_7SYM_0071/2/377:387No text annotation
Not in a motif group
geometric
HL_6UFM_001
HL_00206.1
HL_7SYM_0081/2/416:421No text annotation
Not in a motif group
geometric
HL_4V88_194
HL_50142.2
HL_7SYM_0091/2/441:452No text annotation
Not in a motif group
geometric
HL_4V88_195
HL_84288.1
HL_7SYM_0101/2/462:467No text annotation
Not in a motif group
geometric
HL_6CZR_080
HL_03562.2
HL_7SYM_0111/2/498:504No text annotation
Not in a motif group
geometric
HL_7A0S_011
HL_70546.1
HL_7SYM_0121/2/537:546No text annotation
Not in a motif group
HL_7SYM_0131/2/569:581No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_06285.3
HL_7SYM_0141/2/618:623Other HL
Not in a motif group
geometric
HL_4V88_200
HL_53845.2
HL_7SYM_0161/2/819:829No text annotation
Not in a motif group
HL_7SYM_0181/2/884:902No text annotation
Not in a motif group
geometric
HL_6ORD_035
HL_14843.1
HL_7SYM_0191/2/957:966No text annotation
Not in a motif group
homologous
HL_8C3A_211
HL_12326.1
HL_7SYM_0201/2/994:999Other HL
Not in a motif group
geometric
HL_4LFB_016
HL_87030.2
HL_7SYM_0211/2/1054:1064No text annotation
Not in a motif group
geometric
HL_6CZR_088
HL_12326.1
HL_7SYM_0221/2/1113:1120No text annotation
Not in a motif group
geometric
HL_4GXY_003
HL_96598.1
HL_7SYM_0231/2/1141:1146Other HL
Not in a motif group
geometric
HL_4V88_210
HL_35490.1
HL_7SYM_0241/2/1178:1183Other HL
Not in a motif group
geometric
HL_5J7L_180
HL_35490.1
HL_7SYM_0251/2/1245:1254No text annotation
Not in a motif group
geometric
HL_4V88_212
HL_73530.2
HL_7SYM_0261/2/1295:1304No text annotation
Not in a motif group
homologous
HL_8C3A_218
HL_53597.4
HL_7SYM_0271/2/1353:1359No text annotation
Not in a motif group
HL_7SYM_0281/2/1366:1373No text annotation
Not in a motif group
geometric
HL_4V88_215
HL_71554.2
HL_7SYM_0301/2/1460:1466Other HL
Not in a motif group
geometric
HL_2CZJ_007
HL_53845.2
HL_7SYM_0311/2/1565:1570GNRA
Not in a motif group
geometric
HL_3E5C_002
HL_35490.1
HL_7SYM_0321/2/1614:1625No text annotation
Not in a motif group
geometric
HL_4V88_219
HL_22554.1
HL_7SYM_0331/2/1658:1666No text annotation
Not in a motif group
geometric
HL_4V88_220
HL_60812.1
HL_7SYM_0351/2/1846:1853No text annotation
Not in a motif group
HL_7SYM_0361/z/161:166No text annotation
Not in a motif group
HL_7SYM_0381/z/232:235No text annotation
Not in a motif group
HL_7SYM_0391/z/261:272No text annotation
Not in a motif group
HL_7SYM_0401/z/280:283No text annotation
Not in a motif group
HL_7SYM_0411/z/293:300No text annotation
Not in a motif group
HL_7SYM_0421/z/304:313No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_7SYM_006No text annotation
HL_7SYM_015No text annotation
HL_7SYM_017No text annotation
HL_7SYM_029No text annotation
HL_7SYM_034No text annotation
HL_7SYM_037No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7SYM_0011/2/23:25,
1/2/649:651
No text annotation
Not in a motif group
geometric
IL_5TBW_103
IL_86319.2
IL_7SYM_0021/2/34:36,
1/2/519:521
No text annotation
Not in a motif group
geometric
IL_6IA2_002
IL_86319.2
IL_7SYM_0031/2/37:40,
1/2/514:518
Double sheared
Not in a motif group
geometric
IL_4WF9_016
IL_09705.10
IL_7SYM_0041/2/41:47,
1/2/479:481
No text annotation
Not in a motif group
geometric
IL_4V88_387
IL_33912.1
IL_7SYM_0051/2/49:51,
1/2/476:477
Minor groove platform
Not in a motif group
geometric
IL_4V88_388
IL_42622.3
IL_7SYM_0061/2/63:68,
1/2/81:85
No text annotation
Not in a motif group
geometric
IL_4V88_390
IL_77691.2
IL_7SYM_0071/2/108:110,
1/2/351:353
No text annotation
Not in a motif group
geometric
IL_1T0E_002
IL_86319.2
IL_7SYM_0081/2/110:112,
1/2/349:351
No text annotation
Not in a motif group
geometric
IL_4M4O_001
IL_86319.2
IL_7SYM_0091/2/112:115,
1/2/348:349
Multiple bulged bases
Not in a motif group
geometric
IL_5WLH_001
IL_44546.1
IL_7SYM_0101/2/116:121,
1/2/343:347
No text annotation
Not in a motif group
geometric
IL_4V88_393
IL_64181.2
IL_7SYM_0121/2/145:151,
1/2/167:174
tWH-tWH-tHW-tHW
Not in a motif group
geometric
IL_4V88_394
IL_80604.2
IL_7SYM_0131/2/152:155,
1/2/163:166
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6CZR_168
IL_67743.1
IL_7SYM_0141/2/188:192,
1/2/207:211
Triple sheared
Not in a motif group
geometric
IL_7A0S_056
IL_41507.1
IL_7SYM_0161/2/312:314,
1/2/336:337
Single bulged A
Not in a motif group
geometric
IL_4V88_399
IL_37497.5
IL_7SYM_0171/2/316:319,
1/2/332:334
No text annotation
Not in a motif group
IL_7SYM_0181/2/359:364,
1/2/396:403
Kink-turn with non-sequential stacking
Not in a motif group
geometric
IL_4V88_402
IL_45067.2
IL_7SYM_0191/2/366:371,
1/2/393:394
No text annotation
Not in a motif group
geometric
IL_5Y58_001
IL_48100.2
IL_7SYM_0201/2/411:413,
1/2/424:429
No text annotation
Not in a motif group
geometric
IL_4V88_404
IL_11347.1
IL_7SYM_0211/2/436:439,
1/2/454:457
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1L9A_005
IL_30621.3
IL_7SYM_0221/2/459:461,
1/2/468:470
Isolated near basepair
Not in a motif group
geometric
IL_3NJ7_004
IL_52767.4
IL_7SYM_0231/2/487:489,
1/2/511:512
Single bulged U
Not in a motif group
geometric
IL_5J7L_017
IL_83039.16
IL_7SYM_0241/2/491:495,
1/2/508:509
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_7SYM_0251/2/495:496,
1/2/506:508
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.3
IL_7SYM_0261/2/529:532,
1/2/552:557
No text annotation
Not in a motif group
IL_7SYM_0271/2/534:537,
1/2/546:550
No text annotation
Not in a motif group
IL_7SYM_0281/2/563:565,
1/2/585:592
No text annotation
Not in a motif group
homologous
IL_8C3A_420
IL_55023.1
IL_7SYM_0291/2/566:569,
1/2/581:584
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_402D_001
IL_30621.3
IL_7SYM_0301/2/596:608,
1/2/635:641
No text annotation
Not in a motif group
IL_7SYM_0311/2/611:617,
1/2/624:632
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_7SYM_0321/2/663:665,
1/2/1162:1164
No text annotation
Not in a motif group
geometric
IL_6IA2_005
IL_86319.2
IL_7SYM_0331/2/665:671,
1/2/1161:1162
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_1NBS_009
IL_69996.1
IL_7SYM_0341/2/673:675,
1/2/1030:1032
UG cWW
Not in a motif group
geometric
IL_4LFB_061
IL_86319.2
IL_7SYM_0351/2/676:682,
1/2/1023:1029
No text annotation
Not in a motif group
IL_7SYM_0361/2/692:696,
1/2/730:734
No text annotation
Not in a motif group
IL_7SYM_0381/2/750:754,
1/2/790:793
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_429
IL_30621.3
IL_7SYM_0391/2/802:805,
1/2/858:863
No text annotation
Not in a motif group
IL_7SYM_0401/2/805:807,
1/2/856:858
No text annotation
Not in a motif group
geometric
IL_4YHW_001
IL_70707.1
IL_7SYM_0411/2/807:815,
1/2/849:856
No text annotation
Not in a motif group
geometric
IL_4V88_425
IL_69091.1
IL_7SYM_0421/2/874:876,
1/2/910:912
UU cWW water inserted
Not in a motif group
geometric
IL_4E48_002
IL_86319.2
IL_7SYM_0431/2/876:879,
1/2/907:910
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_438
IL_30621.3
IL_7SYM_0441/2/879:881,
1/2/905:907
Isolated cWS basepair
Not in a motif group
geometric
IL_5TBW_047
IL_52767.4
IL_7SYM_0451/2/922:923,
1/2/1019:1022
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_6N5P_003
IL_50694.2
IL_7SYM_0461/2/924:927,
1/2/1014:1018
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_429
IL_30621.3
IL_7SYM_0471/2/927:931,
1/2/1010:1014
No text annotation
Not in a motif group
geometric
IL_5TBW_121
IL_05145.2
IL_7SYM_0481/2/931:935,
1/2/1007:1010
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_431
IL_30621.3
IL_7SYM_0491/2/942:945,
1/2/981:984
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_432
IL_30621.3
IL_7SYM_0501/2/952:956,
1/2/967:974
Kink-turn
Not in a motif group
geometric
IL_4V88_434
IL_45067.2
IL_7SYM_0511/2/1042:1051,
1/2/1067:1073
No text annotation
Not in a motif group
IL_7SYM_0521/2/1091:1093,
1/2/1152:1158
No text annotation
Not in a motif group
geometric
IL_4V88_437
IL_19557.3
IL_7SYM_0531/2/1098:1103,
1/2/1129:1134
No text annotation
Not in a motif group
geometric
IL_6O5F_001
IL_04668.2
IL_7SYM_0541/2/1108:1111,
1/2/1122:1124
No text annotation
Not in a motif group
geometric
IL_4N0T_004
IL_46796.1
IL_7SYM_0551/2/1168:1175,
1/2/1186:1191
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
geometric
IL_4LFB_034
IL_24606.2
IL_7SYM_0561/2/1214:1217,
1/2/1681:1685
C-loop
Not in a motif group
geometric
IL_4V88_443
IL_63596.6
IL_7SYM_0571/2/1230:1232,
1/2/1526:1528
No text annotation
Not in a motif group
geometric
IL_4V88_444
IL_86319.2
IL_7SYM_0581/2/1235:1236,
1/2/1521:1523
Minor groove platform
Not in a motif group
geometric
IL_5ML7_009
IL_42622.3
IL_7SYM_0591/2/1269:1273,
1/2/1510:1513
No text annotation
Not in a motif group
IL_7SYM_0601/2/1281:1287,
1/2/1314:1316
No text annotation
Not in a motif group
IL_7SYM_0611/2/1287:1294,
1/2/1305:1314
No text annotation
Not in a motif group
IL_7SYM_0621/2/1325:1327,
1/2/1502:1503
Single bulged U
Not in a motif group
geometric
IL_3MEI_001
IL_83039.16
IL_7SYM_0631/2/1329:1333,
1/2/1498:1500
Isolated cWS basepair
Not in a motif group
geometric
IL_4V88_450
IL_76319.2
IL_7SYM_0641/2/1333:1335,
1/2/1492:1498
Minor groove platform with extra cWW
Not in a motif group
geometric
IL_4V88_451
IL_92788.2
IL_7SYM_0651/2/1337:1338,
1/2/1488:1490
Single bulged A
Not in a motif group
geometric
IL_4WF9_006
IL_37497.5
IL_7SYM_0661/2/1347:1349,
1/2/1380:1382
Isolated cWH basepair
Not in a motif group
geometric
IL_4WF9_045
IL_70707.1
IL_7SYM_0671/2/1363:1365,
1/2/1374:1375
Minor groove platform
Not in a motif group
geometric
IL_6DLR_003
IL_42622.3
IL_7SYM_0681/2/1395:1399,
1/2/1447:1450
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_430
IL_30621.3
IL_7SYM_0691/2/1402:1405,
1/2/1441:1444
Minor groove platform
Not in a motif group
geometric
IL_4V88_456
IL_76458.1
IL_7SYM_0701/2/1412:1413,
1/2/1427:1429
No text annotation
Not in a motif group
IL_7SYM_0711/2/1537:1539,
1/2/1594:1596
No text annotation
Not in a motif group
geometric
IL_4E48_005
IL_86319.2
IL_7SYM_0721/2/1550:1558,
1/2/1577:1582
No text annotation
Not in a motif group
geometric
IL_4LFB_052
IL_84205.1
IL_7SYM_0731/2/1559:1563,
1/2/1572:1576
No text annotation
Not in a motif group
IL_7SYM_0741/2/1604:1610,
1/2/1629:1635
No text annotation
Not in a motif group
IL_7SYM_0751/2/1702:1708,
1/2/1826:1833
No text annotation
Not in a motif group
IL_7SYM_0761/2/1708:1711,
1/2/1822:1826
No text annotation
Not in a motif group
IL_7SYM_0771/2/1713:1716,
1/2/1817:1820
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_430
IL_30621.3
IL_7SYM_0781/2/1717:1723,
1/2/1811:1816
No text annotation
Not in a motif group
IL_7SYM_0791/2/1729:1731,
1/2/1803:1805
No text annotation
Not in a motif group
geometric
IL_3GM7_004
IL_86319.2
IL_7SYM_0801/2/1733:1736,
1/2/1798:1801
Double sheared
Not in a motif group
geometric
IL_4V88_471
IL_09705.10
IL_7SYM_0811/2/1739:1741,
1/2/1793:1795
UU cWW water inserted
Not in a motif group
geometric
IL_4E48_002
IL_86319.2
IL_7SYM_0821/2/1742:1746,
1/2/1788:1792
Triple sheared
Not in a motif group
geometric
IL_7RQB_075
IL_56467.8
IL_7SYM_0831/2/1750:1751,
1/2/1782:1784
No text annotation
Not in a motif group
IL_7SYM_0841/2/1751:1753,
1/2/1780:1782
No text annotation
Not in a motif group
IL_7SYM_0851/2/1753:1754,
1/2/1778:1780
No text annotation
Not in a motif group
IL_7SYM_0861/z/135:137,
1/z/287:289
No text annotation
Not in a motif group
IL_7SYM_0871/z/149:150,
1/z/242:244
No text annotation
Not in a motif group
IL_7SYM_0881/z/255:261,
1/z/272:277
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_7SYM_011No text annotation
IL_7SYM_015No text annotation
IL_7SYM_037Minor groove platform

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7SYM_0011/2/40:41,
1/2/481:487,
1/2/512:514
No text annotation
Not in a motif group
J3_7SYM_0021/2/682:685,
1/2/917:922,
1/2/1022:1023
No text annotation
Not in a motif group
J3_7SYM_0031/2/816:819,
1/2/829:831,
1/2/843:848
No text annotation
Not in a motif group
homologous
J3_8C3A_035
NA
J3_7SYM_0041/2/938:941,
1/2/985:993,
1/2/1000:1004
No text annotation
Not in a motif group
J3_7SYM_0051/2/1094:1097,
1/2/1135:1140,
1/2/1147:1151
No text annotation
Not in a motif group
J3_7SYM_0061/2/1218:1221,
1/2/1645:1651,
1/2/1673:1680
No text annotation
Not in a motif group
homologous
J3_8C3A_038
NA
J3_7SYM_0071/2/1225:1228,
1/2/1530:1532,
1/2/1638:1641
No text annotation
Not in a motif group
J3_7SYM_0081/2/1237:1245,
1/2/1254:1266,
1/2/1516:1520
No text annotation
Not in a motif group
J3_7SYM_0091/2/1273:1277,
1/2/1320:1324,
1/2/1504:1510
No text annotation
Not in a motif group
J3_7SYM_0101/2/1340:1347,
1/2/1382:1389,
1/2/1481:1486
No text annotation
Not in a motif group
J3_7SYM_0111/2/1350:1353,
1/2/1359:1363,
1/2/1375:1379
No text annotation
Not in a motif group
J3_7SYM_0121/2/1532:1536,
1/2/1597:1604,
1/2/1635:1638
No text annotation
Not in a motif group
homologous
J3_8C3A_044
NA

Problematic loops

No problematic loops


Coloring options:
Copyright 2024 BGSU RNA group. Page generated in 0.1461 s