6PCT Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/I/59:68 | NA | NA |
| 2 | ➜ | 1/I/87:95 | NA | NA |
| 3 | ➜ | 1/I/123:128 | NA | NA |
| 4 | ➜ | 1/I/137:142 | NA | NA |
| 5 | ➜ | 1/I/158:168 | NA | NA |
| 6 | ➜ | 1/I/194:201 | NA | NA |
| 7 | ➜ | 1/I/225:230 | NA | NA |
| 8 | ➜ | 1/I/246:252 | NA | NA |
| 9 | ➜ | 1/I/305:312 | NA | NA |
| 10 | ➜ | 1/I/319:323 | NA | NA |
| 11 | ➜ | 1/I/327:335 | NA | NA |
| 12 | ➜ | 1/I/382:392 | NA | NA |
| 13 | ➜ | 1/I/410:417 | NA | NA |
| 14 | ➜ | 1/I/462:467 | NA | NA |
| 15 | ➜ | 1/I/487:493 | NA | NA |
| 16 | ➜ | 1/I/543:550 | NA | NA |
| 17 | ➜ | 1/I/566:575 | NA | NA |
| 18 | ➜ | 1/I/611:617 | NA | NA |
| 19 | ➜ | 1/I/629:634 | NA | NA |
| 20 | ➜ | 1/I/641:647 | NA | NA |
| 21 | ➜ | 1/I/712:719 | NA | NA |
| 22 | ➜ | 1/I/744:753 | NA | NA |
| 23 | ➜ | 1/I/779:785 | NA | NA |
| 24 | ➜ | 1/I/826:831 | NA | NA |
| 25 | ➜ | 1/I/954:963 | NA | NA |
| 26 | ➜ | 1/I/978:985 | NA | NA |
| 27 | ➜ | 1/I/1089:1101 | NA | NA |
| 28 | ➜ | 1/I/1168:1181 | NA | NA |
| 29 | ➜ | 1/I/1222:1227 | NA | NA |
| 30 | ➜ | 1/I/1281:1289 | NA | NA |
| 31 | ➜ | 1/I/1324:1330 | NA | NA |
| 32 | ➜ | 1/I/1363:1368 | NA | NA |
| 33 | ➜ | 1/I/1389:1398 | NA | NA |
| 34 | ➜ | 1/I/1451:1459 | NA | NA |
| 35 | ➜ | 1/I/1492:1498 | NA | NA |
| 36 | ➜ | 1/I/1533:1538 | NA | NA |
| 37 | ➜ | 1/I/1565:1568 | NA | NA |
| 38 | ➜ | 1/I/1612:1619 | NA | NA |
| 39 | ➜ | 1/I/1630:1636 | NA | NA |
| 40 | ➜ | 1/I/1691:1696 | NA | NA |
| 41 | ➜ | 1/I/1727:1733 | NA | NA |
| 42 | ➜ | 1/I/1752:1756 | NA | NA |
| 43 | ➜ | 1/I/1777:1787 | NA | NA |
| 44 | ➜ | 1/I/1806:1811 | NA | NA |
| 45 | ➜ | 1/I/1868:1873 | NA | NA |
| 46 | ➜ | 1/I/1909:1921 | NA | NA |
| 47 | ➜ | 1/I/1949:1957 | NA | NA |
| 48 | ➜ | 1/I/2153:2156 | NA | NA |
| 49 | ➜ | 1/I/2209:2215 | NA | NA |
| 50 | ➜ | 1/I/2248:2256 | NA | NA |
| 51 | ➜ | 1/I/2264:2276 | NA | NA |
| 52 | ➜ | 1/I/2303:2313 | NA | NA |
| 53 | ➜ | 1/I/2324:2331 | NA | NA |
| 54 | ➜ | 1/I/2356:2361 | NA | NA |
| 55 | ➜ | 1/I/2374:2379 | NA | NA |
| 56 | ➜ | 1/I/2404:2413 | NA | NA |
| 57 | ➜ | 1/I/2471:2479 | NA | NA |
| 58 | ➜ | 1/I/2528:2535 | NA | NA |
| 59 | ➜ | 1/I/2551:2557 | NA | NA |
| 60 | ➜ | 1/I/2594:2599 | NA | NA |
| 61 | ➜ | 1/I/2658:2663 | NA | NA |
| 62 | ➜ | 1/I/2701:2706 | NA | NA |
| 63 | ➜ | 1/I/2745:2759 | NA | NA |
| 64 | ➜ | 1/I/2795:2801 | NA | NA |
| 65 | ➜ | 1/I/2819:2827 | NA | NA |
| 66 | ➜ | 1/I/2856:2861 | NA | NA |
| 67 | ➜ | 1/J/38:44 | NA | NA |
| 68 | ➜ | 1/J/86:90 | NA | NA |
Problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/I/24:30,1/I/510:516 | NA | NA |
| 2 | ➜ | 1/I/36:37,1/I/442:444 | NA | NA |
| 3 | ➜ | 1/I/43:44,1/I/434:436 | NA | NA |
| 4 | ➜ | 1/I/81:85,1/I/97:105 | NA | NA |
| 5 | ➜ | 1/I/183:184,1/I/212:214 | NA | NA |
| 6 | ➜ | 1/I/188:194,1/I/201:208 | NA | NA |
| 7 | ➜ | 1/I/239:245,1/I/253:258 | NA | NA |
| 8 | ➜ | 1/I/269:271,1/I/366:370 | NA | NA |
| 9 | ➜ | 1/I/274:282,1/I/358:363 | NA | NA |
| 10 | ➜ | 1/I/293:295,1/I/343:347 | NA | NA |
| 11 | ➜ | 1/I/481:484,1/I/496:509 | NA | NA |
| 12 | ➜ | 1/I/536:539,1/I/554:557 | NA | NA |
| 13 | ➜ | 1/I/564:566,1/I/575:577 | NA | NA |
| 14 | ➜ | 1/I/606:610,1/I/618:622 | NA | NA |
| 15 | ➜ | 1/I/672:674,1/I/806:808 | NA | NA |
| 16 | ➜ | 1/I/674:678,1/I/799:806 | NA | NA |
| 17 | ➜ | 1/I/697:698,1/I/763:765 | NA | NA |
| 18 | ➜ | 1/I/702:703,1/I/728:730 | NA | NA |
| 19 | ➜ | 1/I/703:707,1/I/724:728 | NA | NA |
| 20 | ➜ | 1/I/738:740,1/I/757:758 | NA | NA |
| 21 | ➜ | 1/I/775:777,1/I/787:791 | NA | NA |
| 22 | ➜ | 1/I/844:847,1/I/933:934 | NA | NA |
| 23 | ➜ | 1/I/847:848,1/I/930:933 | NA | NA |
| 24 | ➜ | 1/I/850:851,1/I/926:928 | NA | NA |
| 25 | ➜ | 1/I/856:862,1/I/915:921 | NA | NA |
| 26 | ➜ | 1/I/862:863,1/I/913:915 | NA | NA |
| 27 | ➜ | 1/I/864:868,1/I/909:912 | NA | NA |
| 28 | ➜ | 1/I/870:872,1/I/905:907 | NA | NA |
| 29 | ➜ | 1/I/875:879,1/I/898:902 | NA | NA |
| 30 | ➜ | 1/I/994:996,1/I/1159:1160 | NA | NA |
| 31 | ➜ | 1/I/998:1002,1/I/1153:1157 | NA | NA |
| 32 | ➜ | 1/I/1004:1011,1/I/1150:1151 | NA | NA |
| 33 | ➜ | 1/I/1011:1013,1/I/1149:1150 | NA | NA |
| 34 | ➜ | 1/I/1018:1024,1/I/1140:1144 | NA | NA |
| 35 | ➜ | 1/I/1024:1030,1/I/1124:1140 | NA | NA |
| 36 | ➜ | 1/I/1031:1034,1/I/1121:1123 | NA | NA |
| 37 | ➜ | 1/I/1038:1041,1/I/1114:1117 | NA | NA |
| 38 | ➜ | 1/I/1043:1051,1/I/1108:1112 | NA | NA |
| 39 | ➜ | 1/I/1053:1056,1/I/1104:1106 | NA | NA |
| 40 | ➜ | 1/I/1056:1089,1/I/1101:1104 | NA | NA |
| 41 | ➜ | 1/I/1196:1199,1/I/1246:1250 | NA | NA |
| 42 | ➜ | 1/I/1202:1206,1/I/1240:1243 | NA | NA |
| 43 | ➜ | 1/I/1208:1215,1/I/1234:1238 | NA | NA |
| 44 | ➜ | 1/I/1262:1269,1/I/2011:2017 | NA | NA |
| 45 | ➜ | 1/I/1310:1313,1/I/1603:1604 | NA | NA |
| 46 | ➜ | 1/I/1319:1323,1/I/1331:1333 | NA | NA |
| 47 | ➜ | 1/I/1351:1355,1/I/1376:1380 | NA | NA |
| 48 | ➜ | 1/I/1357:1361,1/I/1370:1374 | NA | NA |
| 49 | ➜ | 1/I/1415:1417,1/I/1581:1587 | NA | NA |
| 50 | ➜ | 1/I/1417:1421,1/I/1577:1581 | NA | NA |
| 51 | ➜ | 1/I/1432:1435,1/I/1557:1561 | NA | NA |
| 52 | ➜ | 1/I/1437:1440,1/I/1551:1555 | NA | NA |
| 53 | ➜ | 1/I/1450:1451,1/I/1459:1461 | NA | NA |
| 54 | ➜ | 1/I/1468:1471,1/I/1520:1524 | NA | NA |
| 55 | ➜ | 1/I/1474:1479,1/I/1512:1517 | NA | NA |
| 56 | ➜ | 1/I/1481:1482,1/I/1507:1510 | NA | NA |
| 57 | ➜ | 1/I/1489:1491,1/I/1499:1500 | NA | NA |
| 58 | ➜ | 1/I/1526:1529,1/I/1542:1546 | NA | NA |
| 59 | ➜ | 1/I/1651:1656,1/I/2004:2006 | NA | NA |
| 60 | ➜ | 1/I/1663:1665,1/I/1995:1997 | NA | NA |
| 61 | ➜ | 1/I/1666:1669,1/I/1993:1994 | NA | NA |
| 62 | ➜ | 1/I/1669:1674,1/I/1990:1993 | NA | NA |
| 63 | ➜ | 1/I/1686:1691,1/I/1696:1702 | NA | NA |
| 64 | ➜ | 1/I/1712:1718,1/I/1742:1746 | NA | NA |
| 65 | ➜ | 1/I/1720:1724,1/I/1736:1740 | NA | NA |
| 66 | ➜ | 1/I/1770:1771,1/I/1980:1982 | NA | NA |
| 67 | ➜ | 1/I/1798:1804,1/I/1813:1821 | NA | NA |
| 68 | ➜ | 1/I/1837:1840,1/I/1902:1903 | NA | NA |
| 69 | ➜ | 1/I/1841:1842,1/I/1898:1901 | NA | NA |
| 70 | ➜ | 1/I/1846:1849,1/I/1893:1894 | NA | NA |
| 71 | ➜ | 1/I/1864:1867,1/I/1874:1878 | NA | NA |
| 72 | ➜ | 1/I/1933:1934,1/I/1964:1967 | NA | NA |
| 73 | ➜ | 1/I/1934:1945,1/I/1961:1964 | NA | NA |
| 74 | ➜ | 1/I/2050:2052,1/I/2617:2618 | NA | NA |
| 75 | ➜ | 1/I/2054:2056,1/I/2612:2615 | NA | NA |
| 76 | ➜ | 1/I/2064:2066,1/I/2444:2446 | NA | NA |
| 77 | ➜ | 1/I/2067:2070,1/I/2441:2443 | NA | NA |
| 78 | ➜ | 1/I/2070:2071,1/I/2438:2441 | NA | NA |
| 79 | ➜ | 1/I/2081:2083,1/I/2236:2239 | NA | NA |
| 80 | ➜ | 1/I/2085:2087,1/I/2232:2234 | NA | NA |
| 81 | ➜ | 1/I/2201:2204,1/I/2220:2222 | NA | NA |
| 82 | ➜ | 1/I/2350:2353,1/I/2364:2367 | NA | NA |
| 83 | ➜ | 1/I/2401:2403,1/I/2414:2415 | NA | NA |
| 84 | ➜ | 1/I/2453:2455,1/I/2496:2500 | NA | NA |
| 85 | ➜ | 1/I/2456:2459,1/I/2493:2495 | NA | NA |
| 86 | ➜ | 1/I/2459:2462,1/I/2488:2493 | NA | NA |
| 87 | ➜ | 1/I/2466:2470,1/I/2480:2484 | NA | NA |
| 88 | ➜ | 1/I/2507:2509,1/I/2579:2582 | NA | NA |
| 89 | ➜ | 1/I/2510:2512,1/I/2574:2578 | NA | NA |
| 90 | ➜ | 1/I/2512:2513,1/I/2571:2574 | NA | NA |
| 91 | ➜ | 1/I/2522:2523,1/I/2540:2543 | NA | NA |
| 92 | ➜ | 1/I/2588:2590,1/I/2604:2606 | NA | NA |
| 93 | ➜ | 1/I/2591:2592,1/I/2601:2603 | NA | NA |
| 94 | ➜ | 1/I/2636:2640,1/I/2774:2782 | NA | NA |
| 95 | ➜ | 1/I/2652:2658,1/I/2663:2668 | NA | NA |
| 96 | ➜ | 1/I/2679:2684,1/I/2725:2728 | NA | NA |
| 97 | ➜ | 1/I/2687:2691,1/I/2718:2722 | NA | NA |
| 98 | ➜ | 1/I/2695:2696,1/I/2711:2714 | NA | NA |
| 99 | ➜ | 1/I/2737:2742,1/I/2762:2767 | NA | NA |
| 100 | ➜ | 1/I/2806:2811,1/I/2889:2892 | NA | NA |
| 101 | ➜ | 1/I/2838:2839,1/I/2878:2880 | NA | NA |
| 102 | ➜ | 1/I/2843:2846,1/I/2870:2874 | NA | NA |
| 103 | ➜ | 1/I/2847:2852,1/I/2865:2869 | NA | NA |
| 104 | ➜ | 1/J/17:19,1/J/64:67 | NA | NA |
| 105 | ➜ | 1/J/23:28,1/J/56:60 | NA | NA |
| 106 | ➜ | 1/J/30:32,1/J/50:54 | NA | NA |
| 107 | ➜ | 1/J/34:38,1/J/44:48 | NA | NA |
| 108 | ➜ | 1/J/71:79,1/J/97:105 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/I/30:31,1/I/474:481,1/I/509:510 | NA | NA |
| 2 | ➜ | 1/I/56:57,1/I/70:76,1/I/110:114 | NA | NA |
| 3 | ➜ | 1/I/683:689,1/I/773:775,1/I/791:794 | NA | NA |
| 4 | ➜ | 1/I/698:700,1/I/732:736,1/I/760:763 | NA | NA |
| 5 | ➜ | 1/I/1298:1303,1/I/1625:1627,1/I/1639:1642 | NA | NA |
| 6 | ➜ | 1/I/1306:1309,1/I/1605:1611,1/I/1620:1622 | NA | NA |
| 7 | ➜ | 1/I/1344:1349,1/I/1382:1385,1/I/1402:1403 | NA | NA |
| 8 | ➜ | 1/I/2091:2093,1/I/2196:2200,1/I/2223:2228 | NA | NA |
| 9 | ➜ | 1/I/2295:2299,1/I/2317:2323,1/I/2332:2337 | NA | NA |
| 10 | ➜ | 1/I/2517:2520,1/I/2545:2547,1/I/2561:2567 | NA | NA |
| 11 | ➜ | 1/I/2789:2791,1/I/2805:2806,1/I/2892:2894 | NA | NA |
| 12 | ➜ | 1/I/2812:2815,1/I/2831:2836,1/I/2882:2888 | NA | NA |
| 13 | ➜ | 1/J/10:16,1/J/68:70,1/J/106:110 | NA | NA |
Problematic loops
No problematic loops
Coloring options: