6DTI Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6DTI_001 | 1/A/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6DTI_002 | 1/A/78:84 | No text annotation Not in a motif group | homologous HL_4LFB_002 HL_30784.2 | |
| HL_6DTI_003 | 1/A/152:157 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_6DTI_004 | 1/A/186:192 | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_6DTI_005 | 1/A/208:212 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_6DTI_006 | 1/A/255:263 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_6DTI_007 | 1/A/292:297 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_6DTI_008 | 1/A/316:329 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_6DTI_009 | 1/A/338:343 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_6DTI_010 | 1/A/375:380 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_6DTI_011 | 1/A/414:421 | No text annotation Not in a motif group | ||
| HL_6DTI_012 | 1/A/445:468 | No text annotation Not in a motif group | ||
| HL_6DTI_013 | 1/A/506:511 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6DTI_014 | 1/A/601:607 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_6DTI_015 | 1/A/673:682 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_6DTI_016 | 1/A/710:715 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_6DTI_017 | 1/A/770:780 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_6DTI_018 | 1/A/822:826 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_38927.2 | |
| HL_6DTI_019 | 1/A/840:845 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_6DTI_020 | 1/A/875:880 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6DTI_021 | 1/A/941:950 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6DTI_022 | 1/A/990:995 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6DTI_023 | 1/A/1054:1059 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_6DTI_024 | 1/A/1067:1074 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_6DTI_025 | 1/A/1112:1118 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_03562.2 | |
| HL_6DTI_026 | 1/A/1143:1148 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_6DTI_027 | 1/A/1242:1247 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_6DTI_028 | 1/A/1291:1300 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6DTI_029 | 1/A/1333:1343 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_6DTI_030 | 1/A/1424:1429 | UNCG Not in a motif group | homologous HL_4LFB_031 HL_03562.2 | |
| HL_6DTI_031 | 1/A/1487:1492 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6DTI_001 | 1/A/30:32, 1/A/536:537 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_6DTI_002 | 1/A/44:45, 1/A/392:394 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_6DTI_003 | 1/A/47:52, 1/A/355:357 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_6DTI_004 | 1/A/54:56, 1/A/352:353 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_6DTI_005 | 1/A/63:66, 1/A/96:97 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_6DTI_006 | 1/A/67:69, 1/A/93:95 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_6DTI_007 | 1/A/122:125, 1/A/227:228 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_6DTI_008 | 1/A/126:130, 1/A/223:226 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6DTI_009 | 1/A/142:147, 1/A/162:168 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_6DTI_010 | 1/A/180:182, 1/A/196:198 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_6DTI_011 | 1/A/238:243, 1/A/273:280 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_6DTI_012 | 1/A/245:248, 1/A/270:271 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_6DTI_013 | 1/A/288:289, 1/A/300:304 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_6DTI_014 | 1/A/363:365, 1/A/388:389 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_6DTI_015 | 1/A/367:371, 1/A/385:386 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
| IL_6DTI_016 | 1/A/371:372, 1/A/383:385 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_6DTI_017 | 1/A/441:445, 1/A/468:473 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_6DTI_018 | 1/A/488:495, 1/A/524:525 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_6DTI_019 | 1/A/499:505, 1/A/512:520 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6DTI_020 | 1/A/553:559, 1/A/858:859 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_6DTI_021 | 1/A/564:568, 1/A/741:745 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_6DTI_022 | 1/A/578:580, 1/A/628:629 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_6DTI_023 | 1/A/581:582, 1/A/624:627 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_6DTI_024 | 1/A/589:596, 1/A/612:617 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_6DTI_025 | 1/A/638:639, 1/A/735:738 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_6DTI_026 | 1/A/641:642, 1/A/731:733 | Major groove platform Not in a motif group | homologous IL_6CZR_140 IL_27635.1 | |
| IL_6DTI_027 | 1/A/645:650, 1/A/724:728 | No text annotation Not in a motif group | ||
| IL_6DTI_028 | 1/A/657:662, 1/A/696:701 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_6DTI_029 | 1/A/667:672, 1/A/683:691 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_6DTI_030 | 1/A/758:762, 1/A/788:789 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_6DTI_031 | 1/A/763:767, 1/A/783:787 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_6DTI_032 | 1/A/865:872, 1/A/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_6DTI_033 | 1/A/900:901, 1/A/1370:1372 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_6DTI_034 | 1/A/903:905, 1/A/1367:1368 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_6DTI_035 | 1/A/911:913, 1/A/1357:1361 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_6DTI_036 | 1/A/931:932, 1/A/1203:1205 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_6DTI_037 | 1/A/971:975, 1/A/1022:1023 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_6DTI_038 | 1/A/1026:1028, 1/A/1185:1186 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_6DTI_039 | 1/A/1030:1034, 1/A/1181:1183 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_6DTI_040 | 1/A/1035:1036, 1/A/1176:1180 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_6DTI_041 | 1/A/1038:1039, 1/A/1172:1174 | Single bulged U Not in a motif group | homologous IL_6CZR_156 IL_83039.13 | |
| IL_6DTI_042 | 1/A/1039:1041, 1/A/1170:1172 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_6DTI_043 | 1/A/1100:1106, 1/A/1121:1129 | No text annotation Not in a motif group | ||
| IL_6DTI_044 | 1/A/1106:1110, 1/A/1120:1121 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_6DTI_045 | 1/A/1136:1139, 1/A/1152:1158 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6DTI_046 | 1/A/1224:1230, 1/A/1261:1267 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_6DTI_047 | 1/A/1232:1235, 1/A/1254:1259 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_6DTI_048 | 1/A/1236:1237, 1/A/1251:1253 | Not an internal loop Not in a motif group | homologous IL_4LFB_053 IL_93353.1 | |
| IL_6DTI_049 | 1/A/1237:1239, 1/A/1250:1251 | Minor groove platform Not in a motif group | geometric IL_4LFB_054 IL_93353.1 | |
| IL_6DTI_050 | 1/A/1280:1285, 1/A/1306:1311 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_6DTI_051 | 1/A/1376:1378, 1/A/1473:1476 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_6DTI_052 | 1/A/1378:1381, 1/A/1469:1473 | No text annotation Not in a motif group | ||
| IL_6DTI_053 | 1/A/1382:1384, 1/A/1466:1468 | No text annotation Not in a motif group | geometric IL_3GM7_005 IL_95997.1 | |
| IL_6DTI_054 | 1/A/1384:1386, 1/A/1463:1466 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_6DTI_055 | 1/A/1389:1391, 1/A/1458:1460 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_6DTI_056 | 1/A/1393:1396, 1/A/1453:1456 | Double sheared Not in a motif group | homologous IL_4LFB_060 IL_09705.9 | |
| IL_6DTI_057 | 1/A/1408:1412, 1/A/1438:1441 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_6DTI_058 | 1/A/1412:1414, 1/A/1436:1438 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_6DTI_059 | 1/A/1417:1422, 1/A/1431:1433 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6DTI_001 | 1/A/46:47, 1/A/357:363, 1/A/389:391 | No text annotation Not in a motif group | ||
| J3_6DTI_002 | 1/A/570:572, 1/A/635:638, 1/A/738:739 | No text annotation Not in a motif group | ||
| J3_6DTI_003 | 1/A/656:657, 1/A/701:709, 1/A/716:718 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
| J3_6DTI_004 | 1/A/810:813, 1/A/835:839, 1/A/846:852 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_6DTI_005 | 1/A/921:924, 1/A/1212:1214, 1/A/1314:1317 | No text annotation Not in a motif group | ||
| J3_6DTI_006 | 1/A/933:940, 1/A/951:962, 1/A/1198:1202 | No text annotation Not in a motif group | ||
| J3_6DTI_007 | 1/A/968:971, 1/A/1023:1025, 1/A/1187:1192 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_6DTI_008 | 1/A/1041:1046, 1/A/1085:1091, 1/A/1164:1170 | No text annotation Not in a motif group | ||
| J3_6DTI_009 | 1/A/1051:1052, 1/A/1061:1065, 1/A/1076:1080 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_6DTI_010 | 1/A/1094:1096, 1/A/1133:1136, 1/A/1158:1161 | No text annotation Not in a motif group | homologous J3_4LFB_008 NA | |
| J3_6DTI_011 | 1/A/1214:1218, 1/A/1273:1280, 1/A/1311:1314 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
No problematic loops
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