Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6WD5_0011/1/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_6WD5_0021/1/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_12078.3
HL_6WD5_0031/1/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_70546.1
HL_6WD5_0041/1/137:142No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_70072.1
HL_6WD5_0051/1/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_6WD5_0061/1/194:201No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_6WD5_0071/1/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_56241.1
HL_6WD5_0081/1/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_6WD5_0091/1/304:313No text annotation
Not in a motif group
HL_6WD5_0101/1/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.9
HL_6WD5_0111/1/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_6WD5_0121/1/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_6WD5_0131/1/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_35490.1
HL_6WD5_0141/1/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_35490.1
HL_6WD5_0151/1/545:548No text annotation
Not in a motif group
homologous
HL_7A0S_017
HL_53837.2
HL_6WD5_0161/1/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_150
HL_89380.2
HL_6WD5_0171/1/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_6WD5_0181/1/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_35490.1
HL_6WD5_0191/1/640:648No text annotation
Not in a motif group
geometric
HL_5J7L_012
HL_84085.2
HL_6WD5_0201/1/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_6WD5_0211/1/744:753No text annotation
Not in a motif group
homologous
HL_7A0S_022
HL_39334.6
HL_6WD5_0221/1/779:785No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_6WD5_0231/1/826:831No text annotation
Not in a motif group
homologous
HL_4WF9_025
HL_53619.1
HL_6WD5_0241/1/884:892No text annotation
Not in a motif group
HL_6WD5_0251/1/955:962GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_35490.1
HL_6WD5_0261/1/978:985No text annotation
Not in a motif group
homologous
HL_7A0S_027
HL_64430.2
HL_6WD5_0271/1/1064:1074No text annotation
Not in a motif group
HL_6WD5_0281/1/1092:1099No text annotation
Not in a motif group
homologous
HL_7RQB_030
NA
HL_6WD5_0291/1/1171:1178No text annotation
Not in a motif group
HL_6WD5_0301/1/1222:1227No text annotation
Not in a motif group
homologous
HL_7A0S_031
HL_87030.2
HL_6WD5_0311/1/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_6WD5_0321/1/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_6WD5_0331/1/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_6WD5_0341/1/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_6WD5_0351/1/1450:1461No text annotation
Not in a motif group
geometric
HL_5J7L_018
HL_34168.2
HL_6WD5_0361/1/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_6WD5_0371/1/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_6WD5_0381/1/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.4
HL_6WD5_0391/1/1612:1619No text annotation
Not in a motif group
homologous
HL_4WF9_038
HL_64430.2
HL_6WD5_0401/1/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_35490.1
HL_6WD5_0411/1/1691:1696UNCG
Not in a motif group
geometric
HL_5J7L_011
HL_03562.2
HL_6WD5_0421/1/1728:1731No text annotation
Not in a motif group
geometric
HL_5J7L_176
HL_98426.1
HL_6WD5_0431/1/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.4
HL_6WD5_0441/1/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_6WD5_0451/1/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_35490.1
HL_6WD5_0461/1/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_35490.1
HL_6WD5_0471/1/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_6WD5_0481/1/1949:1957No text annotation
Not in a motif group
homologous
HL_4WF9_046
HL_51824.1
HL_6WD5_0491/1/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_6WD5_0501/1/2142:2149No text annotation
Not in a motif group
HL_6WD5_0511/1/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_6WD5_0521/1/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_6WD5_0531/1/2264:2276No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.6
HL_6WD5_0541/1/2303:2313No text annotation
Not in a motif group
homologous
HL_5J7L_188
HL_11805.3
HL_6WD5_0551/1/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.3
HL_6WD5_0561/1/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_6WD5_0571/1/2374:2379GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_35490.1
HL_6WD5_0581/1/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_40210.1
HL_6WD5_0591/1/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_6WD5_0601/1/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_91104.1
HL_6WD5_0611/1/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_6WD5_0621/1/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_35490.1
HL_6WD5_0631/1/2658:2663GNRA
Not in a motif group
geometric
HL_3PDR_001
HL_35490.1
HL_6WD5_0641/1/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_6WD5_0651/1/2745:2759No text annotation
Not in a motif group
homologous
HL_4WF9_062
HL_56677.7
HL_6WD5_0661/1/2795:2801Other HL
Not in a motif group
homologous
HL_5J7L_200
HL_34168.2
HL_6WD5_0671/1/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_64690.1
HL_6WD5_0681/1/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_35490.1
HL_6WD5_0691/2/34:48No text annotation
Not in a motif group
HL_6WD5_0701/2/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.4
HL_6WD5_0711/3/11:23No text annotation
Not in a motif group
HL_6WD5_0721/3/78:91No text annotation
Not in a motif group
HL_6WD5_0731/3/157:164No text annotation
Not in a motif group
geometric
HL_7A0S_056
HL_84085.2
HL_6WD5_0741/3/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_35490.1
HL_6WD5_0751/3/206:213No text annotation
Not in a motif group
geometric
HL_5M3H_001
HL_56241.1
HL_6WD5_0761/3/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_6WD5_0771/3/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_35490.1
HL_6WD5_0781/3/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_6WD5_0791/3/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_6WD5_0801/3/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_35490.1
HL_6WD5_0811/3/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_6WD5_0821/3/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_6WD5_0831/3/522:527No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_70072.1
HL_6WD5_0841/3/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.3
HL_6WD5_0851/3/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_6WD5_0861/3/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_6WD5_0871/3/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_6WD5_0881/3/840:846No text annotation
Not in a motif group
HL_6WD5_0891/3/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_35490.1
HL_6WD5_0901/3/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_35490.1
HL_6WD5_0911/3/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_6WD5_0921/3/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_35490.1
HL_6WD5_0931/3/1028:1033No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_91104.1
HL_6WD5_0941/3/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_35490.1
HL_6WD5_0951/3/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_6WD5_0961/3/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_6WD5_0971/3/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_35490.1
HL_6WD5_0981/3/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_35490.1
HL_6WD5_0991/3/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_6WD5_1001/3/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_6WD5_1011/3/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_6WD5_1021/3/1515:1520Other HL
Not in a motif group
geometric
HL_4V88_222
HL_16173.1
HL_6WD5_1031/5/13:22No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_6WD5_1041/5/31:39No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_6WD5_1051/5/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WJ4_003
HL_22280.3
HL_6WD5_1061/6/13:22No text annotation
Not in a motif group
homologous
HL_4LCK_001
NA
HL_6WD5_1071/6/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_6UFM_002
HL_53597.4
HL_6WD5_1081/6/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_1U0B_003
HL_71309.2
HL_6WD5_1091/7/13:22No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_6WD5_1101/7/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_5IBB_210
HL_53597.4
HL_6WD5_1111/7/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5B63_004
HL_22280.3

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6WD5_0011/1/24:30,
1/1/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_4WF9_001
IL_66414.6
IL_6WD5_0021/1/36:37,
1/1/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.5
IL_6WD5_0031/1/43:44,
1/1/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.3
IL_6WD5_0041/1/81:85,
1/1/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_6WD5_0051/1/183:184,
1/1/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.3
IL_6WD5_0061/1/188:194,
1/1/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_250
IL_04346.7
IL_6WD5_0071/1/239:245,
1/1/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_6WD5_0081/1/269:271,
1/1/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_6WD5_0091/1/274:281,
1/1/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_6WD5_0101/1/293:295,
1/1/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_6WD5_0111/1/481:484,
1/1/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.6
IL_6WD5_0121/1/536:539,
1/1/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.10
IL_6WD5_0131/1/564:566,
1/1/575:577
No text annotation
Not in a motif group
homologous
IL_5J7L_257
IL_86319.2
IL_6WD5_0141/1/606:610,
1/1/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_6WD5_0151/1/672:674,
1/1/806:808
No text annotation
Not in a motif group
homologous
IL_5J7L_259
IL_86319.2
IL_6WD5_0161/1/674:678,
1/1/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_5J7L_260
IL_17470.6
IL_6WD5_0171/1/697:698,
1/1/763:765
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_37497.5
IL_6WD5_0181/1/702:703,
1/1/728:730
Single bulged G
Not in a motif group
homologous
IL_5J7L_262
IL_00225.3
IL_6WD5_0191/1/703:707,
1/1/724:728
Triple sheared
Not in a motif group
geometric
IL_4WF9_024
IL_56467.8
IL_6WD5_0201/1/738:740,
1/1/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.3
IL_6WD5_0211/1/775:777,
1/1/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_6WD5_0221/1/844:847,
1/1/933:934
Other IL
Not in a motif group
geometric
IL_5J7L_267
IL_92001.1
IL_6WD5_0231/1/847:848,
1/1/930:933
Stack outside cWW
Not in a motif group
homologous
IL_5J7L_268
IL_37629.1
IL_6WD5_0241/1/850:851,
1/1/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.3
IL_6WD5_0251/1/856:862,
1/1/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_6WD5_0261/1/862:863,
1/1/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.3
IL_6WD5_0271/1/864:868,
1/1/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_6WD5_0281/1/870:872,
1/1/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_86319.2
IL_6WD5_0291/1/875:879,
1/1/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_6WD5_0301/1/880:881,
1/1/895:897
No text annotation
Not in a motif group
IL_6WD5_0311/1/994:996,
1/1/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_6WD5_0321/1/998:1002,
1/1/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7A0S_033
IL_89002.2
IL_6WD5_0331/1/1004:1011,
1/1/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_4WF9_037
IL_15861.7
IL_6WD5_0341/1/1011:1013,
1/1/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.16
IL_6WD5_0351/1/1018:1024,
1/1/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_6WD5_0361/1/1024:1030,
1/1/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_6WD5_0371/1/1031:1034,
1/1/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4WF9_041
IL_43275.1
IL_6WD5_0381/1/1038:1041,
1/1/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.3
IL_6WD5_0391/1/1043:1051,
1/1/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_6WD5_0401/1/1059:1062,
1/1/1076:1079
No text annotation
Not in a motif group
homologous
IL_5J7L_285
IL_23544.2
IL_6WD5_0411/1/1087:1090,
1/1/1101:1102
No text annotation
Not in a motif group
homologous
IL_6PRV_002
NA
IL_6WD5_0421/1/1196:1198,
1/1/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.4
IL_6WD5_0431/1/1202:1206,
1/1/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_6WD5_0441/1/1208:1215,
1/1/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_6WD5_0451/1/1262:1269,
1/1/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_6WD5_0461/1/1310:1313,
1/1/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_6WD5_0471/1/1319:1323,
1/1/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_6WD5_0481/1/1351:1355,
1/1/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_6WD5_0491/1/1357:1361,
1/1/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_6WD5_0501/1/1415:1416,
1/1/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_6WD5_0511/1/1417:1421,
1/1/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_6WD5_0521/1/1432:1435,
1/1/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_6WD5_0531/1/1437:1440,
1/1/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_6WD5_0541/1/1468:1471,
1/1/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_6WD5_0551/1/1474:1478,
1/1/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_6WD5_0561/1/1481:1482,
1/1/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_6WD5_0571/1/1489:1491,
1/1/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.5
IL_6WD5_0581/1/1526:1530,
1/1/1541:1546
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.2
IL_6WD5_0591/1/1651:1656,
1/1/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_6WD5_0601/1/1663:1665,
1/1/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_6WD5_0611/1/1666:1669,
1/1/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_064
IL_50694.2
IL_6WD5_0621/1/1669:1674,
1/1/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_76273.1
IL_6WD5_0631/1/1686:1691,
1/1/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_7RQB_068
IL_65969.2
IL_6WD5_0641/1/1712:1718,
1/1/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_6WD5_0651/1/1720:1724,
1/1/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_6WD5_0661/1/1727:1728,
1/1/1731:1733
Single bulged C
Not in a motif group
homologous
IL_5J7L_311
IL_61258.12
IL_6WD5_0671/1/1770:1771,
1/1/1980:1982
Single bulged A
Not in a motif group
homologous
IL_4WF9_068
IL_37497.5
IL_6WD5_0681/1/1798:1804,
1/1/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_6WD5_0691/1/1837:1840,
1/1/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.2
IL_6WD5_0701/1/1841:1842,
1/1/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_6WD5_0711/1/1846:1849,
1/1/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.7
IL_6WD5_0721/1/1864:1867,
1/1/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.2
IL_6WD5_0731/1/1933:1934,
1/1/1964:1967
No text annotation
Not in a motif group
homologous
IL_4WF9_076
IL_59677.2
IL_6WD5_0741/1/1934:1945,
1/1/1961:1964
No text annotation
Not in a motif group
geometric
IL_4WF9_077
IL_81589.2
IL_6WD5_0751/1/2050:2052,
1/1/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.3
IL_6WD5_0761/1/2054:2056,
1/1/2612:2615
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_6WD5_0771/1/2067:2069,
1/1/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.16
IL_6WD5_0781/1/2070:2071,
1/1/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.3
IL_6WD5_0791/1/2081:2083,
1/1/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_6WD5_0801/1/2085:2087,
1/1/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_86319.2
IL_6WD5_0811/1/2103:2105,
1/1/2184:2186
No text annotation
Not in a motif group
geometric
IL_4NGF_002
IL_86319.2
IL_6WD5_0821/1/2105:2121,
1/1/2177:2184
No text annotation
Not in a motif group
IL_6WD5_0831/1/2202:2204,
1/1/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.16
IL_6WD5_0841/1/2350:2353,
1/1/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.10
IL_6WD5_0851/1/2401:2403,
1/1/2414:2415
No text annotation
Not in a motif group
IL_6WD5_0861/1/2453:2454,
1/1/2498:2500
Single stack bend
Not in a motif group
geometric
IL_4WF9_089
IL_76488.3
IL_6WD5_0871/1/2454:2455,
1/1/2496:2498
Major groove platform
Not in a motif group
homologous
IL_7RQB_092
IL_27635.3
IL_6WD5_0881/1/2457:2459,
1/1/2493:2494
Major groove platform
Not in a motif group
geometric
IL_7A0S_085
IL_27635.3
IL_6WD5_0891/1/2459:2461,
1/1/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_094
IL_92788.2
IL_6WD5_0901/1/2466:2470,
1/1/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_6WD5_0911/1/2507:2508,
1/1/2580:2582
Major groove platform
Not in a motif group
homologous
IL_4WF9_094
IL_76223.2
IL_6WD5_0921/1/2510:2512,
1/1/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_7RQB_097
IL_90933.2
IL_6WD5_0931/1/2512:2513,
1/1/2571:2574
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_71530.2
IL_6WD5_0941/1/2522:2523,
1/1/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_6WD5_0951/1/2591:2592,
1/1/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.5
IL_6WD5_0961/1/2636:2640,
1/1/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_6WD5_0971/1/2652:2658,
1/1/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7A0S_094
IL_16458.1
IL_6WD5_0981/1/2680:2684,
1/1/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_6WD5_0991/1/2687:2691,
1/1/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_6WD5_1001/1/2695:2696,
1/1/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_4WF9_103
IL_71530.2
IL_6WD5_1011/1/2737:2742,
1/1/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_6WD5_1021/1/2806:2811,
1/1/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_6WD5_1031/1/2838:2839,
1/1/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_6WD5_1041/1/2843:2846,
1/1/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_6WD5_1051/1/2847:2852,
1/1/2865:2869
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.5
IL_6WD5_1061/2/17:18,
1/2/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.5
IL_6WD5_1071/2/23:28,
1/2/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_6WD5_1081/2/30:31,
1/2/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V9F_103
IL_09061.7
IL_6WD5_1091/2/71:79,
1/2/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3
IL_6WD5_1101/3/30:32,
1/3/552:553
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.3
IL_6WD5_1111/3/44:45,
1/3/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.5
IL_6WD5_1121/3/47:52,
1/3/359:361
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_14177.1
IL_6WD5_1131/3/54:56,
1/3/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_42622.3
IL_6WD5_1141/3/63:66,
1/3/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_6CZR_117
IL_76389.1
IL_6WD5_1151/3/67:69,
1/3/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_6WD5_1161/3/70:73,
1/3/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_6WD5_1171/3/75:76,
1/3/93:95
Major groove intercalation
Not in a motif group
geometric
IL_5J7L_352
IL_16396.2
IL_6WD5_1181/3/128:131,
1/3/231:233
No text annotation
Not in a motif group
IL_6WD5_1191/3/132:136,
1/3/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_6WD5_1201/3/144:146,
1/3/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_70707.1
IL_6WD5_1211/3/147:153,
1/3/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_6WD5_1221/3/203:206,
1/3/213:214
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_6WD5_1231/3/242:247,
1/3/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_6WD5_1241/3/249:252,
1/3/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_6WD5_1251/3/292:293,
1/3/304:308
C-loop
Not in a motif group
homologous
IL_5J7L_016
IL_37712.2
IL_6WD5_1261/3/367:369,
1/3/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.16
IL_6WD5_1271/3/371:375,
1/3/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_6WD5_1281/3/375:376,
1/3/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.3
IL_6WD5_1291/3/409:416,
1/3/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_6WD5_1301/3/440:442,
1/3/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_6WD5_1311/3/446:450,
1/3/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_6WD5_1321/3/450:455,
1/3/477:483
No text annotation
Not in a motif group
homologous
IL_5J7L_023
IL_70801.1
IL_6WD5_1331/3/504:511,
1/3/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_6WD5_1341/3/515:521,
1/3/528:536
No text annotation
Not in a motif group
homologous
IL_4LFB_021
NA
IL_6WD5_1351/3/569:575,
1/3/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_6WD5_1361/3/580:584,
1/3/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_6WD5_1371/3/594:596,
1/3/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.3
IL_6WD5_1381/3/597:598,
1/3/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.7
IL_6WD5_1391/3/605:612,
1/3/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_6WD5_1401/3/654:655,
1/3/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_6WD5_1411/3/659:660,
1/3/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.3
IL_6WD5_1421/3/662:666,
1/3/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_6WD5_1431/3/673:679,
1/3/711:717
No text annotation
Not in a motif group
IL_6WD5_1441/3/684:688,
1/3/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_6WD5_1451/3/774:778,
1/3/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_6WD5_1461/3/779:783,
1/3/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_6WD5_1471/3/887:894,
1/3/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_6WD5_1481/3/922:923,
1/3/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.5
IL_6WD5_1491/3/925:927,
1/3/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.3
IL_6WD5_1501/3/933:935,
1/3/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041