Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7BL4_0011/A/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_7BL4_0021/A/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_03186.1
HL_7BL4_0031/A/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_70546.1
HL_7BL4_0041/A/136:143No text annotation
Not in a motif group
HL_7BL4_0051/A/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_7BL4_0061/A/194:201No text annotation
Not in a motif group
homologous
HL_4WF9_006
HL_06192.2
HL_7BL4_0071/A/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_56241.1
HL_7BL4_0081/A/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_7BL4_0091/A/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_41998.1
HL_7BL4_0101/A/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_70546.1
HL_7BL4_0111/A/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.9
HL_7BL4_0121/A/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_7BL4_0131/A/410:417No text annotation
Not in a motif group
homologous
HL_7A0S_014
HL_96598.1
HL_7BL4_0141/A/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_35490.2
HL_7BL4_0151/A/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_35490.2
HL_7BL4_0161/A/543:550No text annotation
Not in a motif group
homologous
HL_5J7L_149
HL_79531.1
HL_7BL4_0171/A/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_150
HL_41998.1
HL_7BL4_0181/A/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.3
HL_7BL4_0191/A/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_35490.2
HL_7BL4_0201/A/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_7BL4_0231/A/779:785No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_7BL4_0241/A/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_53619.1
HL_7BL4_0261/A/955:962No text annotation
Not in a motif group
homologous
HL_7A0S_026
HL_35490.2
HL_7BL4_0271/A/978:985No text annotation
Not in a motif group
homologous
HL_4WF9_028
HL_64430.2
HL_7BL4_0301/A/1172:1177No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_70072.1
HL_7BL4_0311/A/1222:1227No text annotation
Not in a motif group
homologous
HL_7A0S_031
HL_87030.2
HL_7BL4_0321/A/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_41998.1
HL_7BL4_0331/A/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_7BL4_0341/A/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_7BL4_0351/A/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_7BL4_0361/A/1451:1459No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.2
HL_7BL4_0371/A/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_7BL4_0381/A/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_7BL4_0391/A/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.5
HL_7BL4_0401/A/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_7BL4_0411/A/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_35490.2
HL_7BL4_0431/A/1727:1733No text annotation
Not in a motif group
geometric
HL_5J7L_018
HL_34168.2
HL_7BL4_0441/A/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.5
HL_7BL4_0501/A/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_7BL4_0641/A/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_35490.2
HL_7BL4_0651/A/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_7BL4_0661/A/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_7BL4_0671/A/2796:2799No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.2
HL_7BL4_0681/A/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_64690.1
HL_7BL4_0691/A/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_35490.2
HL_7BL4_0701/B/38:44No text annotation
Not in a motif group
geometric
HL_5J7L_203
HL_87939.2
HL_7BL4_0711/B/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.5

Problematic loops

#loop idProblemSequence
HL_7BL4_021No text annotation
HL_7BL4_022No text annotation
HL_7BL4_025No text annotation
HL_7BL4_028No text annotation
HL_7BL4_029No text annotation
HL_7BL4_042No text annotation
HL_7BL4_045No text annotation
HL_7BL4_046No text annotation
HL_7BL4_047Other HL
HL_7BL4_048No text annotation
HL_7BL4_049No text annotation
HL_7BL4_051No text annotation
HL_7BL4_052No text annotation
HL_7BL4_053No text annotation
HL_7BL4_054No text annotation
HL_7BL4_055No text annotation
HL_7BL4_056No text annotation
HL_7BL4_057Other HL
HL_7BL4_058GNRA
HL_7BL4_059No text annotation
HL_7BL4_060No text annotation
HL_7BL4_061No text annotation
HL_7BL4_062No text annotation
HL_7BL4_063No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7BL4_0011/A/24:30,
1/A/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7RQB_001
IL_66414.6
IL_7BL4_0021/A/36:37,
1/A/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.6
IL_7BL4_0031/A/43:44,
1/A/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.4
IL_7BL4_0041/A/81:85,
1/A/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_7BL4_0051/A/183:184,
1/A/212:214
Single stack bend
Not in a motif group
homologous
IL_7A0S_005
IL_76488.4
IL_7BL4_0061/A/188:194,
1/A/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7A0S_006
IL_04346.7
IL_7BL4_0071/A/239:245,
1/A/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_7BL4_0081/A/269:271,
1/A/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_7BL4_0091/A/274:281,
1/A/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_7BL4_0101/A/293:295,
1/A/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_7BL4_0111/A/481:484,
1/A/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_7BL4_0121/A/536:539,
1/A/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.10
IL_7BL4_0131/A/564:566,
1/A/575:577
No text annotation
Not in a motif group
homologous
IL_4WF9_017
IL_86319.2
IL_7BL4_0141/A/606:610,
1/A/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_7BL4_0151/A/672:674,
1/A/806:808
No text annotation
Not in a motif group
geometric
IL_4WF9_020
IL_86319.2
IL_7BL4_0161/A/674:678,
1/A/799:806
No text annotation
Not in a motif group
homologous
IL_7RQB_018
IL_17470.6
IL_7BL4_0221/A/844:847,
1/A/933:934
Other IL
Not in a motif group
homologous
IL_5J7L_267
IL_92001.1
IL_7BL4_0231/A/847:848,
1/A/930:933
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_7BL4_0241/A/850:851,
1/A/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.4
IL_7BL4_0251/A/856:862,
1/A/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.3
IL_7BL4_0261/A/862:863,
1/A/913:915
Single bulged G
Not in a motif group
homologous
IL_5J7L_271
IL_00225.3
IL_7BL4_0311/A/994:996,
1/A/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_7BL4_0321/A/998:1002,
1/A/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7A0S_033
IL_89002.2
IL_7BL4_0331/A/1004:1011,
1/A/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4WF9_037
IL_15861.7
IL_7BL4_0341/A/1011:1013,
1/A/1149:1150
Single bulged U
Not in a motif group
geometric
IL_4WF9_038
IL_83039.16
IL_7BL4_0351/A/1018:1024,
1/A/1140:1144
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_7BL4_0361/A/1024:1030,
1/A/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_7BL4_0421/A/1196:1198,
1/A/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_52767.4
IL_7BL4_0431/A/1202:1206,
1/A/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_7BL4_0441/A/1208:1215,
1/A/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_7BL4_0451/A/1262:1269,
1/A/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_7BL4_0461/A/1310:1313,
1/A/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_049
IL_50694.2
IL_7BL4_0471/A/1319:1323,
1/A/1331:1333
Major groove minor groove platform with tHH
Not in a motif group
homologous
IL_4WF9_050
IL_37712.2
IL_7BL4_0481/A/1351:1355,
1/A/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7A0S_048
IL_89002.2
IL_7BL4_0491/A/1357:1361,
1/A/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_7BL4_0501/A/1415:1416,
1/A/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_7BL4_0511/A/1417:1421,
1/A/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_7RQB_055
IL_89002.2
IL_7BL4_0521/A/1432:1435,
1/A/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_7BL4_0531/A/1437:1440,
1/A/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_7BL4_0541/A/1450:1451,
1/A/1459:1461
Single bulged U
Not in a motif group
homologous
IL_5J7L_298
IL_83039.16
IL_7BL4_0551/A/1468:1471,
1/A/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_7BL4_0561/A/1474:1478,
1/A/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_7BL4_0571/A/1481:1482,
1/A/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_7BL4_0581/A/1489:1491,
1/A/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.6
IL_7BL4_0591/A/1526:1529,
1/A/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_7BL4_0601/A/1651:1656,
1/A/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_7BL4_0611/A/1663:1665,
1/A/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_7BL4_0621/A/1666:1669,
1/A/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_7BL4_0631/A/1669:1674,
1/A/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_76273.1
IL_7BL4_0651/A/1712:1718,
1/A/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_7BL4_0661/A/1720:1726,
1/A/1734:1740
No text annotation
Not in a motif group
IL_7BL4_0751/A/2050:2052,
1/A/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.3
IL_7BL4_0761/A/2054:2056,
1/A/2612:2615
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_7BL4_0981/A/2636:2640,
1/A/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_7BL4_0991/A/2652:2658,
1/A/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_5J7L_346
IL_16458.1
IL_7BL4_1001/A/2680:2684,
1/A/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_7BL4_1011/A/2687:2691,
1/A/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_7BL4_1021/A/2695:2696,
1/A/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_7BL4_1031/A/2737:2742,
1/A/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_7BL4_1041/A/2795:2796,
1/A/2799:2801
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.6
IL_7BL4_1051/A/2806:2811,
1/A/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_7BL4_1061/A/2838:2839,
1/A/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_7BL4_1071/A/2843:2846,
1/A/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_7BL4_1081/A/2847:2852,
1/A/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_7BL4_1091/B/17:18,
1/B/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.6
IL_7BL4_1101/B/23:28,
1/B/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_7BL4_1111/B/30:32,
1/B/50:54
No text annotation
Not in a motif group
homologous
IL_4WF9_114
IL_10810.1
IL_7BL4_1121/B/34:38,
1/B/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5J7L_358
IL_58103.6
IL_7BL4_1131/B/71:79,
1/B/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3

Problematic loops

#loop idProblemSequence
IL_7BL4_017Single bulged A
IL_7BL4_018Single bulged G
IL_7BL4_019Triple sheared
IL_7BL4_020Major groove platform
IL_7BL4_021Multiple bulged bases
IL_7BL4_027C-loop
IL_7BL4_028Isolated cWS basepair
IL_7BL4_029Triple sheared
IL_7BL4_030Isolated non-canonical cWW with bulges
IL_7BL4_037Isolated non-canonical cWW with bulges
IL_7BL4_038Tandem non-canonical cWW pairs
IL_7BL4_039No text annotation
IL_7BL4_040No text annotation
IL_7BL4_041Major groove platform
IL_7BL4_064tSH-tSH-tHH-tHS
IL_7BL4_067Single bulged A
IL_7BL4_068Kink-turn related
IL_7BL4_069Major groove outside cWW, minor groove, intercalation pocket
IL_7BL4_070Major groove outside cWW, minor groove, intercalation pocket
IL_7BL4_071Major groove minor groove platform; mini C-loop
IL_7BL4_072UAA/GAN related
IL_7BL4_073Multiple bulged bases
IL_7BL4_074No text annotation
IL_7BL4_077Single bulged U
IL_7BL4_078Minor groove platform
IL_7BL4_079Isolated tHS basepair with bulges
IL_7BL4_080No text annotation
IL_7BL4_081No text annotation
IL_7BL4_082No text annotation
IL_7BL4_083No text annotation
IL_7BL4_084No text annotation
IL_7BL4_085No text annotation
IL_7BL4_086Single bulged U
IL_7BL4_087Double sheared
IL_7BL4_088No text annotation
IL_7BL4_089Major groove platform
IL_7BL4_090Major groove platform
IL_7BL4_091No text annotation
IL_7BL4_092Triple sheared
IL_7BL4_093Major groove platform
IL_7BL4_094Isolated non-canonical cWW with bulges
IL_7BL4_095No text annotation
IL_7BL4_096Minor groove platform with intercalation
IL_7BL4_097Single bulged A

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7BL4_0011/A/30:31,
1/A/474:481,
1/A/509:510
No text annotation
Not in a motif group
homologous
J3_5J7L_036
NA
J3_7BL4_0021/A/56:57,
1/A/70:76,
1/A/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_7BL4_0061/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_7BL4_0071/A/1306:1309,
1/A/1605:1611,
1/A/1620:1622
No text annotation
Not in a motif group
homologous
J3_7A0S_007
NA
J3_7BL4_0081/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_7BL4_0121/A/2789:2791,
1/A/2805:2806,
1/A/2892:2894
No text annotation
Not in a motif group
homologous
J3_5J7L_047
NA
J3_7BL4_0131/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_7BL4_0141/B/10:16,
1/B/68:70,
1/B/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA

Problematic loops

#loop idProblemSequence
J3_7BL4_003No text annotation
J3_7BL4_004No text annotation
J3_7BL4_005No text annotation
J3_7BL4_009No text annotation
J3_7BL4_010No text annotation
J3_7BL4_011No text annotation

Coloring options:
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