RNA 3D Hub //

5OQL Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5OQL_0041/1/219:225No text annotation
geometric
HL_4V9F_019
HL_42293.1
HL_5OQL_0051/1/264:268Mini UNCG
geometric
HL_6MSF_001
HL_90436.3
HL_5OQL_0091/1/496:502Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_5OQL_0111/1/738:744GNRA related
homologous
HL_4V88_188
NA
HL_5OQL_0161/1/998:1003UNCG
homologous
HL_4V88_196
NA
HL_5OQL_0191/1/1104:1116No text annotation
homologous
HL_4V88_199
NA
HL_5OQL_0201/1/1145:1150No text annotation
geometric
HL_5TBW_006
NA
HL_5OQL_0221/1/1485:1494No text annotation
homologous
HL_4V88_206
NA
HL_5OQL_0231/1/1522:1527GNRA
homologous
HL_4V88_207
NA
HL_5OQL_0241/1/1640:1648tRNA anticodon loop
geometric
HL_2D6F_005
HL_92598.1
HL_5OQL_0271/1/2177:2185Mini UNCG
geometric
HL_4TUW_002
HL_12626.2

Problematic loops

#loop idProblemSequence
HL_5OQL_001No text annotation
HL_5OQL_002No text annotation
HL_5OQL_003No text annotation
HL_5OQL_006No text annotation
HL_5OQL_007No text annotation
HL_5OQL_008No text annotation
HL_5OQL_010No text annotation
HL_5OQL_012T-loop with 1 bulged base
HL_5OQL_013Mini UNCG
HL_5OQL_014GNRA related
HL_5OQL_015No text annotation
HL_5OQL_017No text annotation
HL_5OQL_018Externally structured
HL_5OQL_021No text annotation
HL_5OQL_025No text annotation
HL_5OQL_030No text annotation
HL_5OQL_026GNRA
HL_5OQL_031No text annotation
HL_5OQL_028No text annotation
HL_5OQL_029No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5OQL_0041/1/80:81,
1/1/126:128		Single bulged C
geometric
IL_7KGA_004
IL_05642.2
IL_5OQL_0051/1/82:84,
1/1/123:125		Isolated non-canonical cWW pair
geometric
IL_1U9S_007
IL_01003.3
IL_5OQL_0071/1/135:137,
1/1/201:204		No text annotation
IL_5OQL_0081/1/137:140,
1/1/198:201		Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
IL_15225.2
IL_5OQL_0091/1/144:147,
1/1/190:194		Minor groove platform related
geometric
IL_3BNR_008
IL_60988.2
IL_5OQL_0151/1/246:248,
1/2/70:72		Isolated non-canonical cWW pair
geometric
IL_7A0S_020
IL_01003.3
IL_5OQL_0161/1/296:299,
1/1/342:343		Major groove minor groove platform; mini C-loop
geometric
IL_1I6U_002
IL_73108.2
IL_5OQL_0171/1/301:302,
1/1/338:340		Single bulged C
geometric
IL_3HHN_003
IL_05642.2
IL_5OQL_0181/1/358:362,
1/1/405:410		No text annotation
geometric
IL_8C3A_401
NA
IL_5OQL_0191/1/364:365,
1/1/401:403		Single bulged U
geometric
IL_3TZR_002
IL_97561.3
IL_5OQL_0211/1/368:373,
1/1/393:398		No text annotation
geometric
IL_6O5F_001
NA
IL_5OQL_0221/1/376:379,
1/1/387:390		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_5OQL_0231/1/423:425,
1/2/48:50		Isolated non-canonical cWW pair
geometric
IL_3TD0_006
NA
IL_5OQL_0241/1/446:448,
1/1/486:487		Single stack bend
geometric
IL_5J7L_032
NA
IL_5OQL_0251/1/448:449,
1/1/484:486		Single stack bend
geometric
IL_4LFB_041
IL_15011.2
IL_5OQL_0261/1/449:450,
1/1/482:484		Single bulged U
geometric
IL_4V9F_107
IL_97561.3
IL_5OQL_0271/1/454:457,
1/1/475:478		Double sheared
geometric
IL_5AOX_003
IL_58355.2
IL_5OQL_0281/1/457:459,
1/1/473:475		Isolated near basepair
geometric
IL_3NJ7_004
IL_42997.5
IL_5OQL_0301/1/611:613,
1/1/1184:1185		Single bulged C
homologous
IL_4V88_384
NA
IL_5OQL_0311/1/622:624,
1/1/1055:1057		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_5OQL_0321/1/624:628,
1/1/1050:1055		Triple sheared
geometric
IL_3MXH_002
IL_15190.2
IL_5OQL_0331/1/637:639,
1/1/1012:1013		Single stack bend
geometric
IL_4WF9_007
IL_15011.2
IL_5OQL_0361/1/695:698,
1/1/886:889		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_5OQL_0391/1/733:736,
1/1/746:749		Tandem non-canonical cWW pairs
geometric
IL_4WF9_109
NA
IL_5OQL_0481/1/973:975,
1/1/990:992		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_5OQL_0511/1/1027:1031,
1/1/1044:1045		C-loop
geometric
IL_5J7L_018
NA
IL_5OQL_0521/1/1031:1032,
1/1/1042:1044		Single bulged G
geometric
IL_5J7L_019
NA
IL_5OQL_0531/1/1066:1067,
1/1/1088:1090		Single bulged A
homologous
IL_4V88_409
NA
IL_5OQL_0541/1/1098:1100,
1/1/1120:1127		No text annotation
geometric
IL_8VTW_081
NA
IL_5OQL_0551/1/1101:1102,
1/1/1117:1119		Minor groove platform
geometric
IL_4UYK_001
IL_34520.3
IL_5OQL_0561/1/1102:1104,
1/1/1116:1117		Minor groove platform
geometric
IL_4V88_412
NA
IL_5OQL_0571/1/1136:1143,
1/1/1152:1168		No text annotation
IL_5OQL_0651/1/1478:1484,
1/1/1495:1504		Kink-turn related
homologous
IL_8C3A_440
NA
IL_5OQL_0871/1/1627:1629,
1/1/1658:1661		No text annotation
IL_5OQL_0681/1/1636:1638,
1/1/1650:1651		No text annotation
IL_5OQL_0691/1/1701:1703,
1/2/6:8		Isolated non-canonical cWW pair
geometric
IL_6CZR_118
NA
IL_5OQL_0701/1/1734:1736,
1/1/2209:2223		Isolated non-canonical cWW pair
geometric
IL_6CZR_122
NA
IL_5OQL_0711/1/1741:1744,
1/1/2200:2204		C-loop
homologous
IL_4V88_443
NA
IL_5OQL_0861/1/1757:1759,
1/1/2047:2049		Isolated non-canonical cWW pair
homologous
IL_8P9A_432
IL_01003.3
IL_5OQL_0741/1/2079:2081,
1/1/2092:2094		Isolated non-canonical cWW pair
geometric
IL_7A0S_107
IL_71625.3
IL_5OQL_0751/1/2233:2235,
1/1/2331:2333		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_5OQL_0761/1/2236:2239,
1/1/2327:2330		Tandem non-canonical cWW pairs
geometric
IL_4K27_001
IL_15225.2
IL_5OQL_0771/2/80:87,
1/2/262:266		No text annotation
IL_5OQL_0781/2/87:95,
1/2/258:262		No text annotation
IL_5OQL_0791/2/97:98,
1/2/254:256		No text annotation
IL_5OQL_0801/2/111:115,
1/2/190:197		No text annotation

Problematic loops

#loop idProblemSequence
IL_5OQL_083No text annotation
IL_5OQL_001No text annotation
IL_5OQL_084Isolated non-canonical cWW pair
IL_5OQL_002Single bulged A
IL_5OQL_003No text annotation
IL_5OQL_006Double sheared
IL_5OQL_085No text annotation
IL_5OQL_010No text annotation
IL_5OQL_011Single stack bend
IL_5OQL_012Single stack bend
IL_5OQL_013No text annotation
IL_5OQL_014Isolated non-canonical cWW pair
IL_5OQL_020No text annotation
IL_5OQL_029Tandem non-canonical cWW pairs
IL_5OQL_034No text annotation
IL_5OQL_035No text annotation
IL_5OQL_037Multiple bulged bases
IL_5OQL_038No text annotation
IL_5OQL_040Major groove platform with extra cWW
IL_5OQL_041Isolated non-canonical cWW pair
IL_5OQL_042No text annotation
IL_5OQL_043Single bulged A
IL_5OQL_044No text annotation
IL_5OQL_045No text annotation
IL_5OQL_046Kink-turn with non-sequential stacking
IL_5OQL_047No text annotation
IL_5OQL_049Isolated near basepair
IL_5OQL_050Single bulged U
IL_5OQL_058Isolated non-canonical cWW pair
IL_5OQL_059tSH-tHW-tHS
IL_5OQL_060No text annotation
IL_5OQL_061No text annotation
IL_5OQL_062Isolated non-canonical cWW pair
IL_5OQL_063Tandem non-canonical cWW pairs
IL_5OQL_064Isolated non-canonical cWW pair
IL_5OQL_066No text annotation
IL_5OQL_067No text annotation
IL_5OQL_072Tandem non-canonical cWW pairs
IL_5OQL_073No text annotation
IL_5OQL_081No text annotation
IL_5OQL_082No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5OQL_0031/1/1466:1469,
1/1/1513:1521,
1/1/1528:1532		No text annotation
homologous
J3_4V88_033
NA
J3_5OQL_0091/1/1745:1748,
1/1/2164:2170,
1/1/2192:2199		No text annotation
J3_5OQL_0051/1/1752:1755,
1/1/2051:2053,
1/1/2157:2160		No text annotation
homologous
J3_4V88_036
NA
J5_5OQL_0011/1/254:262,
1/1/270:292,
1/1/347:353,
1/1/415:417,
1/2/56:64		No text annotation
J5_5OQL_0021/1/618:622,
1/1/1057:1062,
1/1/1094:1098,
1/1/1127:1130,
1/1/1176:1179		No text annotation

Problematic loops

#loop idProblemSequence
J3_5OQL_001No text annotation
J3_5OQL_002No text annotation
J3_5OQL_008No text annotation
J3_5OQL_004No text annotation
J3_5OQL_006No text annotation
J3_5OQL_007No text annotation

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