Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/1/13:22NANA
1/1/31:39NANA
1/1/53:61NANA
1/2/7:17
homologous
HL_4V88_186
NA

HL_67265.4*
1/2/70:81
geometric
HL_5J7L_143
NA

HL_98557.5*
1/2/152:160
geometric
HL_5NFV_001
NA

HL_58912.1*
1/2/189:194
homologous
HL_4V88_189
NA

HL_39228.1*
1/2/229:234
geometric
HL_3SKI_003
NA

HL_69941.1*
1/2/242:249T-loop with 1 bulged base
homologous
HL_4V88_191
NA

HL_68493.6*
1/2/274:280
geometric
HL_5TBW_006
NA

HL_98557.5*
1/2/329:337
homologous
HL_4V88_193
NA

HL_93727.5*
1/2/367:372
homologous
HL_4V88_194
NA

HL_18785.1*
1/2/392:403
homologous
HL_4V88_195
NA

HL_22443.1*
1/2/413:418UNCG
homologous
HL_4V88_196
NA

HL_79299.11*
1/2/449:455
homologous
HL_4V88_197
NA

HL_50374.1*
1/2/490:495NANA
1/2/519:531
homologous
HL_4V88_199
NA

HL_17086.2*
1/2/568:573Other HL
homologous
HL_4V88_200
NA

HL_43074.18*
1/2/659:669NANA
1/2/713:725NANA
1/2/764:772
homologous
HL_4V88_203
NA

HL_72066.1*
1/2/777:782NANA
1/2/828:842
homologous
HL_4V88_205
NA

HL_03603.1*
1/2/898:909NANA
1/2/936:941Other HL
homologous
HL_4V88_207
NA

HL_43074.18*
1/2/996:1006
homologous
HL_4V88_208
NA

HL_87219.4*
1/2/1055:1063NANA
1/2/1083:1088Other HL
homologous
HL_4V88_210
NA

HL_43074.18*
1/2/1120:1125GNRA
homologous
HL_4V88_211
NA

HL_43074.18*
1/2/1187:1196
homologous
HL_4V88_212
NA

HL_96854.1*
1/2/1236:1247NANA
1/2/1295:1300GNRA
homologous
HL_4V88_214
NA

HL_43074.18*
1/2/1308:1315
homologous
HL_4V88_215
NA

HL_54035.7*
1/2/1358:1363
geometric
HL_2Y9H_003
NA

HL_98557.5*
1/2/1394:1400
homologous
HL_4V88_217
NA

HL_67216.5*
1/2/1499:1504GNRA
homologous
HL_4V88_218
NA

HL_43074.18*
1/2/1547:1560NANA
1/2/1592:1600
homologous
HL_4V88_220
NA

HL_01181.4*
1/2/1776:1781Other HL
homologous
HL_4V88_222
NA

HL_43074.18*

Problematic loops

#loop idProblemSequence
HL_6GSN_039NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/2/24:27,
1/2/598:600
Decoding loop related
geometric
IL_2O3X_003
NA

IL_04038.4*
1/2/35:37,
1/2/470:472
UU cWW
geometric
IL_4ZC7_004
NA

IL_01312.13*
1/2/37:41,
1/2/465:470
NANA
1/2/42:48,
1/2/430:432

homologous
IL_4V88_387
NA

IL_34626.4*
1/2/50:52,
1/2/427:428
Minor groove platform
homologous
IL_4V88_388
NA

IL_06437.11*
1/2/58:63,
1/2/87:89

geometric
IL_4V88_389
NA

IL_96451.1*
1/2/63:64,
1/2/85:87
Single stack bend
geometric
IL_4LFB_041
NA

IL_04038.4*
1/2/64:70,
1/2/81:85
Triple sheared
geometric
IL_4WFL_001
NA

IL_56467.6*
1/2/109:112,
1/2/301:304
Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA

IL_85877.10*
1/2/112:113,
1/2/299:301
Single stack bend
geometric
IL_5J7L_032
NA

IL_04038.4*
1/2/113:117,
1/2/298:299
NANA
1/2/117:121,
1/2/294:298
NANA
1/2/121:123,
1/2/293:294
Single stack bend
geometric
IL_4LFB_041
NA

IL_04038.4*
1/2/123:124,
1/2/291:293
Single stack bend
geometric
IL_4LFB_041
NA

IL_04038.4*
1/2/142:148,
1/2/164:171
tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA

IL_92440.5*
1/2/149:151,
1/2/161:163

homologous
IL_4V88_395
NA

IL_87880.2*
1/2/185:188,
1/2/195:198
Double sheared
homologous
IL_4V88_396
NA

IL_09705.7*
1/2/203:205,
1/2/258:262
Major groove platform with extra cWW
homologous
IL_4V88_397
NA

IL_95485.6*
1/2/205:206,
1/2/256:258
Single stack bend
geometric
IL_7KGA_003
NA

IL_04038.4*
1/2/207:209,
1/2/254:255
Single stack bend
geometric
IL_4LFB_041
NA

IL_04038.4*
1/2/264:267,
1/2/286:288
CC cWW
geometric
IL_4E59_001
NA

IL_01312.13*
1/2/269:272,
1/2/282:284

homologous
IL_4V88_400
NA

IL_05922.1*
1/2/310:315,
1/2/347:354
Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA

IL_29549.9*
1/2/317:322,
1/2/344:345

geometric
IL_4ERD_001
NA

IL_77771.1*
1/2/362:364,
1/2/375:380

homologous
IL_4V88_404
NA

IL_46732.1*
1/2/388:390,
1/2/405:407
Isolated cWH basepair
homologous
IL_4V88_405
NA

IL_42589.6*
1/2/438:440,
1/2/462:463
Single bulged U
geometric
IL_4LFB_014
NA

IL_83039.11*
1/2/442:446,
1/2/459:460
C-loop
geometric
IL_5J7L_018
NA

IL_08376.2*
1/2/446:447,
1/2/457:459
Single bulged G
geometric
IL_5J7L_019
NA

IL_59137.10*
1/2/479:483,
1/2/502:507
NANA
1/2/486:489,
1/2/496:499
NANA
1/2/547:556,
1/2/586:589
NANA
1/2/556:558,
1/2/585:586
Single bulged U
geometric
IL_5J7L_279
NA

IL_83039.11*
1/2/561:567,
1/2/574:582

homologous
IL_4V88_415
NA

IL_04667.1*
1/2/615:621,
1/2/1103:1104

homologous
IL_4V88_416
NA

IL_12418.1*
1/2/623:625,
1/2/972:974

homologous
IL_4V88_417
NA

IL_01312.13*
1/2/626:630,
1/2/967:971
tSH-tHW-tHS
homologous
IL_4V88_418
NA

IL_39521.5*
1/2/650:652,
1/2/678:683
NANA
1/2/656:658,
1/2/670:674
NANA
1/2/703:713,
1/2/725:735
NANA
1/2/744:747,
1/2/801:806
NANA
1/2/748:750,
1/2/798:800

homologous
IL_4V88_424
NA

IL_01312.13*
1/2/816:821,
1/2/849:853
NANA
1/2/866:869,
1/2/956:960
Tandem non-canonical cWW pairs
homologous
IL_4V88_429
NA

IL_85877.10*
1/2/870:873,
1/2/952:955
Tandem non-canonical cWW pairs
homologous
IL_4V88_430
NA

IL_85877.10*
1/2/873:877,
1/2/949:952
Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA

IL_85877.10*
1/2/884:887,
1/2/923:926
Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA

IL_85877.10*
1/2/892:898,
1/2/909:918
NANA
1/2/1033:1035,
1/2/1094:1100

homologous
IL_4V88_437
NA

IL_19557.1*
1/2/1040:1044,
1/2/1072:1076
NANA
1/2/1050:1052,
1/2/1065:1066
Single bulged U
homologous
IL_4V88_439
NA

IL_83039.11*
1/2/1053:1055,
1/2/1063:1064
Single stack bend
geometric
IL_4LFB_041
NA

IL_04038.4*
1/2/1110:1117,
1/2/1128:1133
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA

IL_24606.1*
1/2/1118:1120,
1/2/1125:1127

geometric
IL_6OL3_002
NA

IL_01312.13*
1/2/1143:1145,
1/2/1630:1631
NANA
1/2/1145:1147,
1/2/1627:1630
Isolated non-canonical cWW with bulges
geometric
IL_4V9F_097
NA

IL_01312.13*
1/2/1148:1150,
1/2/1625:1626
Single bulged G
homologous
IL_4V88_442
NA

IL_59137.10*
1/2/1156:1159,
1/2/1615:1619
C-loop
homologous
IL_4V88_443
NA

IL_63596.4*
1/2/1172:1175,
1/2/1461:1464
Tandem non-canonical cWW pairs
geometric
IL_3WBM_003
NA

IL_85877.10*
1/2/1177:1178,
1/2/1457:1459
Minor groove platform
homologous
IL_4V88_445
NA

IL_06437.11*
1/2/1206:1208,
1/2/1452:1453
NANA
1/2/1212:1214,
1/2/1446:1448

homologous
IL_4V88_446
NA

IL_01312.13*
1/2/1222:1232,
1/2/1251:1259
NANA
1/2/1232:1235,
1/2/1248:1251
NANA
1/2/1267:1269,
1/2/1438:1439
Single bulged U
homologous
IL_4V88_449
NA

IL_83039.11*
1/2/1270:1275,
1/2/1434:1437
Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA

IL_85877.10*
1/2/1275:1277,
1/2/1428:1434
Minor groove platform with extra cWW
homologous
IL_4V88_451
NA

IL_09768.1*
1/2/1279:1280,
1/2/1424:1426
Single bulged A
homologous
IL_4V88_452
NA

IL_80007.16*
1/2/1289:1291,
1/2/1322:1324
Isolated cWH basepair
homologous
IL_4V88_453
NA

IL_42589.6*
1/2/1305:1307,
1/2/1316:1317
Minor groove platform
homologous
IL_4V88_454
NA

IL_06437.11*
1/2/1338:1341,
1/2/1381:1383

homologous
IL_4V88_455
NA

IL_01312.13*
1/2/1344:1347,
1/2/1375:1378
Minor groove platform
homologous
IL_4V88_456
NA

IL_69507.1*
1/2/1352:1354,
1/2/1367:1370
Isolated non-canonical cWW with bulges
geometric
IL_3KTW_002
NA

IL_01312.13*
1/2/1387:1389,
1/2/1405:1410
NANA
1/2/1478:1485,
1/2/1517:1525

homologous
IL_4V88_459
NA

IL_69573.1*
1/2/1486:1492,
1/2/1511:1516

homologous
IL_4V88_460
NA

IL_75461.2*
1/2/1493:1496,
1/2/1507:1510
Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA

IL_85877.10*
1/2/1538:1543,
1/2/1564:1569

homologous
IL_4V88_462
NA

IL_19954.1*
1/2/1634:1636,
1/2/1762:1765

homologous
IL_4V88_463
NA

IL_36143.2*
1/2/1636:1639,
1/2/1758:1762

geometric
IL_4V88_464
NA

IL_59281.1*
1/2/1640:1642,
1/2/1755:1757

homologous
IL_4V88_465
NA

IL_01312.13*
1/2/1642:1645,
1/2/1751:1755
Tandem non-canonical cWW pairs
geometric
IL_6CZR_141
NA

IL_85877.10*
1/2/1648:1650,
1/2/1746:1748
AA cWW
homologous
IL_4V88_467
NA

IL_01312.13*
1/2/1651:1654,
1/2/1742:1745
Double sheared
geometric
IL_5J7L_333
NA

IL_09705.7*
1/2/1654:1656,
1/2/1741:1742
Single bulged U
homologous
IL_4V88_469
NA

IL_21340.1*
1/2/1663:1665,
1/2/1732:1734

homologous
IL_4V88_470
NA

IL_01312.13*
1/2/1667:1670,
1/2/1727:1730
Double sheared
homologous
IL_4V88_471
NA

IL_09705.7*
1/2/1673:1676,
1/2/1721:1724
Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA

IL_85877.10*
1/2/1676:1680,
1/2/1717:1721
Triple sheared
homologous
IL_4V88_474
NA

IL_56467.6*
1/2/1684:1688,
1/2/1709:1713
NANA
1/2/1768:1770,
1/2/1787:1788
Single stack bend
geometric
IL_4V83_236
NA

IL_04038.4*

Problematic loops

No problematic loops

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/2/41:42,
1/2/432:438,
1/2/463:465
NANA
1/2/632:634,
1/2/860:865,
1/2/961:965
NANA
1/2/880:884,
1/2/926:935,
1/2/942:946
NANA
1/2/1036:1038,
1/2/1078:1082,
1/2/1089:1093
NANA
1/2/1160:1162,
1/2/1580:1585,
1/2/1607:1614
NANA
1/2/1167:1170,
1/2/1466:1468,
1/2/1572:1575

homologous
J3_4V88_036
NA
1/2/1179:1186,
1/2/1197:1206,
1/2/1453:1456
NANA
1/2/1214:1219,
1/2/1262:1266,
1/2/1440:1446
NANA
1/2/1282:1287,
1/2/1326:1331,
1/2/1417:1422

homologous
J3_4V88_039
NA
1/2/1291:1293,
1/2/1302:1305,
1/2/1317:1322
NANA
1/2/1335:1337,
1/2/1384:1387,
1/2/1410:1413
NANA
1/2/1468:1472,
1/2/1531:1538,
1/2/1569:1572
NANA

Problematic loops

No problematic loops


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