6GSN Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GSN_001 | 1/1/13:22 | No text annotation Not in a motif group | homologous HL_5UD5_001 HL_09136.1 | |
| HL_6GSN_002 | 1/1/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_6GSN_003 | 1/1/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_3TUP_003 HL_71309.1 | |
| HL_6GSN_004 | 1/2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6GSN_005 | 1/2/70:81 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_6GSN_006 | 1/2/152:160 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6GSN_007 | 1/2/189:194 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_6GSN_008 | 1/2/229:234 | No text annotation Not in a motif group | geometric HL_3SKI_003 HL_52841.1 | |
| HL_6GSN_009 | 1/2/242:249 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6GSN_010 | 1/2/274:280 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6GSN_011 | 1/2/329:337 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6GSN_012 | 1/2/367:372 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6GSN_013 | 1/2/392:403 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6GSN_014 | 1/2/413:418 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6GSN_015 | 1/2/449:455 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6GSN_016 | 1/2/490:495 | No text annotation Not in a motif group | ||
| HL_6GSN_017 | 1/2/519:531 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_6GSN_018 | 1/2/568:573 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6GSN_019 | 1/2/659:669 | No text annotation Not in a motif group | ||
| HL_6GSN_020 | 1/2/713:725 | No text annotation Not in a motif group | ||
| HL_6GSN_021 | 1/2/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6GSN_022 | 1/2/777:782 | No text annotation Not in a motif group | ||
| HL_6GSN_023 | 1/2/828:842 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_6GSN_024 | 1/2/898:909 | No text annotation Not in a motif group | ||
| HL_6GSN_025 | 1/2/936:941 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6GSN_026 | 1/2/996:1006 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6GSN_027 | 1/2/1055:1063 | No text annotation Not in a motif group | ||
| HL_6GSN_028 | 1/2/1083:1088 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.2 | |
| HL_6GSN_029 | 1/2/1120:1125 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.2 | |
| HL_6GSN_030 | 1/2/1187:1196 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_6GSN_031 | 1/2/1236:1247 | No text annotation Not in a motif group | ||
| HL_6GSN_032 | 1/2/1295:1300 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.2 | |
| HL_6GSN_033 | 1/2/1308:1315 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6GSN_034 | 1/2/1358:1363 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6GSN_035 | 1/2/1394:1400 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.2 | |
| HL_6GSN_036 | 1/2/1499:1504 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.2 | |
| HL_6GSN_037 | 1/2/1547:1560 | No text annotation Not in a motif group | ||
| HL_6GSN_038 | 1/2/1592:1600 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6GSN_040 | 1/2/1776:1781 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6GSN_039 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GSN_001 | 1/2/24:27, 1/2/598:600 | Decoding loop related Not in a motif group | geometric IL_2O3X_003 IL_82842.2 | |
| IL_6GSN_002 | 1/2/35:37, 1/2/470:472 | UU cWW Not in a motif group | geometric IL_4ZC7_004 IL_95997.1 | |
| IL_6GSN_003 | 1/2/37:41, 1/2/465:470 | No text annotation Not in a motif group | ||
| IL_6GSN_004 | 1/2/42:48, 1/2/430:432 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_6GSN_005 | 1/2/50:52, 1/2/427:428 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6GSN_006 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | geometric IL_4V88_389 IL_95004.1 | |
| IL_6GSN_007 | 1/2/63:64, 1/2/85:87 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6GSN_008 | 1/2/64:70, 1/2/81:85 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_6GSN_009 | 1/2/109:112, 1/2/301:304 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.3 | |
| IL_6GSN_010 | 1/2/112:113, 1/2/299:301 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6GSN_011 | 1/2/113:117, 1/2/298:299 | No text annotation Not in a motif group | ||
| IL_6GSN_012 | 1/2/117:121, 1/2/294:298 | No text annotation Not in a motif group | ||
| IL_6GSN_013 | 1/2/121:123, 1/2/293:294 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6GSN_014 | 1/2/123:124, 1/2/291:293 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6GSN_015 | 1/2/142:148, 1/2/164:171 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6GSN_016 | 1/2/149:151, 1/2/161:163 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_6GSN_017 | 1/2/185:188, 1/2/195:198 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_6GSN_018 | 1/2/203:205, 1/2/258:262 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_6GSN_019 | 1/2/205:206, 1/2/256:258 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_6GSN_020 | 1/2/207:209, 1/2/254:255 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6GSN_021 | 1/2/264:267, 1/2/286:288 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_95997.1 | |
| IL_6GSN_022 | 1/2/269:272, 1/2/282:284 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6GSN_023 | 1/2/310:315, 1/2/347:354 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6GSN_024 | 1/2/317:322, 1/2/344:345 | No text annotation Not in a motif group | geometric IL_4ERD_001 IL_59677.2 | |
| IL_6GSN_025 | 1/2/362:364, 1/2/375:380 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6GSN_026 | 1/2/388:390, 1/2/405:407 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6GSN_027 | 1/2/438:440, 1/2/462:463 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.14 | |
| IL_6GSN_028 | 1/2/442:446, 1/2/459:460 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6GSN_029 | 1/2/446:447, 1/2/457:459 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.3 | |
| IL_6GSN_030 | 1/2/479:483, 1/2/502:507 | No text annotation Not in a motif group | ||
| IL_6GSN_031 | 1/2/486:489, 1/2/496:499 | No text annotation Not in a motif group | ||
| IL_6GSN_032 | 1/2/547:556, 1/2/586:589 | No text annotation Not in a motif group | ||
| IL_6GSN_033 | 1/2/556:558, 1/2/585:586 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.14 | |
| IL_6GSN_034 | 1/2/561:567, 1/2/574:582 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6GSN_035 | 1/2/615:621, 1/2/1103:1104 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6GSN_036 | 1/2/623:625, 1/2/972:974 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6GSN_037 | 1/2/626:630, 1/2/967:971 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6GSN_038 | 1/2/650:652, 1/2/678:683 | No text annotation Not in a motif group | ||
| IL_6GSN_039 | 1/2/656:658, 1/2/670:674 | No text annotation Not in a motif group | ||
| IL_6GSN_040 | 1/2/703:713, 1/2/725:735 | No text annotation Not in a motif group | ||
| IL_6GSN_041 | 1/2/744:747, 1/2/801:806 | No text annotation Not in a motif group | ||
| IL_6GSN_042 | 1/2/748:750, 1/2/798:800 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6GSN_043 | 1/2/816:821, 1/2/849:853 | No text annotation Not in a motif group | ||
| IL_6GSN_044 | 1/2/866:869, 1/2/956:960 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.3 | |
| IL_6GSN_045 | 1/2/870:873, 1/2/952:955 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.3 | |
| IL_6GSN_046 | 1/2/873:877, 1/2/949:952 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_100 IL_30621.3 | |
| IL_6GSN_047 | 1/2/884:887, 1/2/923:926 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.3 | |
| IL_6GSN_048 | 1/2/892:898, 1/2/909:918 | No text annotation Not in a motif group | ||
| IL_6GSN_049 | 1/2/1033:1035, 1/2/1094:1100 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6GSN_050 | 1/2/1040:1044, 1/2/1072:1076 | No text annotation Not in a motif group | ||
| IL_6GSN_051 | 1/2/1050:1052, 1/2/1065:1066 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.14 | |
| IL_6GSN_052 | 1/2/1053:1055, 1/2/1063:1064 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6GSN_053 | 1/2/1110:1117, 1/2/1128:1133 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6GSN_054 | 1/2/1118:1120, 1/2/1125:1127 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_6GSN_055 | 1/2/1143:1145, 1/2/1630:1631 | No text annotation Not in a motif group | ||
| IL_6GSN_056 | 1/2/1145:1147, 1/2/1627:1630 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_6GSN_057 | 1/2/1148:1150, 1/2/1625:1626 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.3 | |
| IL_6GSN_058 | 1/2/1156:1159, 1/2/1615:1619 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6GSN_059 | 1/2/1172:1175, 1/2/1461:1464 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_003 IL_30621.3 | |
| IL_6GSN_060 | 1/2/1177:1178, 1/2/1457:1459 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6GSN_061 | 1/2/1206:1208, 1/2/1452:1453 | No text annotation Not in a motif group | ||
| IL_6GSN_062 | 1/2/1212:1214, 1/2/1446:1448 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_6GSN_063 | 1/2/1222:1232, 1/2/1251:1259 | No text annotation Not in a motif group | ||
| IL_6GSN_064 | 1/2/1232:1235, 1/2/1248:1251 | No text annotation Not in a motif group | ||
| IL_6GSN_065 | 1/2/1267:1269, 1/2/1438:1439 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.14 | |
| IL_6GSN_066 | 1/2/1270:1275, 1/2/1434:1437 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.3 | |
| IL_6GSN_067 | 1/2/1275:1277, 1/2/1428:1434 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_6GSN_068 | 1/2/1279:1280, 1/2/1424:1426 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.3 | |
| IL_6GSN_069 | 1/2/1289:1291, 1/2/1322:1324 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_6GSN_070 | 1/2/1305:1307, 1/2/1316:1317 | Minor groove platform Not in a motif group | homologous IL_4V88_454 IL_93353.1 | |
| IL_6GSN_071 | 1/2/1338:1341, 1/2/1381:1383 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_6GSN_072 | 1/2/1344:1347, 1/2/1375:1378 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_6GSN_073 | 1/2/1352:1354, 1/2/1367:1370 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3KTW_002 IL_82068.2 | |
| IL_6GSN_074 | 1/2/1387:1389, 1/2/1405:1410 | No text annotation Not in a motif group | homologous IL_8C3A_465 IL_58032.1 | |
| IL_6GSN_075 | 1/2/1478:1485, 1/2/1517:1525 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_6GSN_076 | 1/2/1486:1492, 1/2/1511:1516 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_6GSN_077 | 1/2/1493:1496, 1/2/1507:1510 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.3 | |
| IL_6GSN_078 | 1/2/1538:1543, 1/2/1564:1569 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_6GSN_079 | 1/2/1634:1636, 1/2/1762:1765 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_6GSN_080 | 1/2/1636:1639, 1/2/1758:1762 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6GSN_081 | 1/2/1640:1642, 1/2/1755:1757 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_95997.1 | |
| IL_6GSN_082 | 1/2/1642:1645, 1/2/1751:1755 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_141 IL_71110.1 | |
| IL_6GSN_083 | 1/2/1648:1650, 1/2/1746:1748 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6GSN_084 | 1/2/1651:1654, 1/2/1742:1745 | Double sheared Not in a motif group | geometric IL_5J7L_333 IL_09705.9 | |
| IL_6GSN_085 | 1/2/1654:1656, 1/2/1741:1742 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.14 | |
| IL_6GSN_086 | 1/2/1663:1665, 1/2/1732:1734 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6GSN_087 | 1/2/1667:1670, 1/2/1727:1730 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6GSN_088 | 1/2/1673:1676, 1/2/1721:1724 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.3 | |
| IL_6GSN_089 | 1/2/1676:1680, 1/2/1717:1721 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_6GSN_090 | 1/2/1684:1688, 1/2/1709:1713 | No text annotation Not in a motif group | ||
| IL_6GSN_091 | 1/2/1768:1770, 1/2/1787:1788 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GSN_001 | 1/2/41:42, 1/2/432:438, 1/2/463:465 | No text annotation Not in a motif group | ||
| J3_6GSN_002 | 1/2/632:634, 1/2/860:865, 1/2/961:965 | No text annotation Not in a motif group | homologous J3_8C3A_034 NA | |
| J3_6GSN_003 | 1/2/880:884, 1/2/926:935, 1/2/942:946 | No text annotation Not in a motif group | ||
| J3_6GSN_004 | 1/2/1036:1038, 1/2/1078:1082, 1/2/1089:1093 | No text annotation Not in a motif group | ||
| J3_6GSN_005 | 1/2/1160:1162, 1/2/1580:1585, 1/2/1607:1614 | No text annotation Not in a motif group | ||
| J3_6GSN_006 | 1/2/1167:1170, 1/2/1466:1468, 1/2/1572:1575 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6GSN_007 | 1/2/1179:1186, 1/2/1197:1206, 1/2/1453:1456 | No text annotation Not in a motif group | ||
| J3_6GSN_008 | 1/2/1214:1219, 1/2/1262:1266, 1/2/1440:1446 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_6GSN_009 | 1/2/1282:1287, 1/2/1326:1331, 1/2/1417:1422 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_6GSN_010 | 1/2/1291:1293, 1/2/1302:1305, 1/2/1317:1322 | No text annotation Not in a motif group | ||
| J3_6GSN_011 | 1/2/1335:1337, 1/2/1384:1387, 1/2/1410:1413 | No text annotation Not in a motif group | ||
| J3_6GSN_012 | 1/2/1468:1472, 1/2/1531:1538, 1/2/1569:1572 | No text annotation Not in a motif group | homologous J3_4V88_041 NA |
Problematic loops
No problematic loops
Coloring options: