RNA 3D Hub //

6YLH Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6YLH_0011/1/38:45No text annotation
Not in a motif group
HL_6YLH_0021/1/69:74No text annotation
Not in a motif group		homologous
HL_8C3A_002
HL_02862.2
HL_6YLH_0031/1/90:96No text annotation
Not in a motif group		homologous
HL_8C3A_003
HL_67216.7
HL_6YLH_0041/1/132:136No text annotation
Not in a motif group		homologous
HL_8C3A_004
HL_98426.1
HL_6YLH_0051/1/194:201No text annotation
Not in a motif group		homologous
HL_8C3A_005
HL_89380.2
HL_6YLH_0061/1/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_6YLH_0071/1/216:224No text annotation
Not in a motif group		homologous
HL_8C3A_007
HL_08002.8
HL_6YLH_0081/1/278:287No text annotation
Not in a motif group		homologous
HL_8C3A_008
HL_71554.2
HL_6YLH_0101/1/357:362No text annotation
Not in a motif group		homologous
HL_8C3A_010
HL_42097.1
HL_6YLH_0111/1/382:387No text annotation
Not in a motif group		homologous
HL_8C3A_011
HL_42097.1
HL_6YLH_0121/1/543:548No text annotation
Not in a motif group		homologous
HL_5TBW_012
HL_86373.2
HL_6YLH_0131/1/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_6YLH_0151/1/686:694No text annotation
Not in a motif group		homologous
HL_8C3A_015
HL_03345.1
HL_6YLH_0161/1/707:712No text annotation
Not in a motif group		homologous
HL_8C3A_016
HL_42097.1
HL_6YLH_0171/1/732:737GNRA
Not in a motif group		homologous
HL_5TBW_017
HL_42097.1
HL_6YLH_0221/1/957:964No text annotation
Not in a motif group
HL_6YLH_0251/1/1126:1132Other HL
Not in a motif group		geometric
HL_4V9F_039
HL_27930.1
HL_6YLH_0261/1/1148:1155No text annotation
Not in a motif group		homologous
HL_5TBW_026
HL_64430.2
HL_6YLH_0301/1/1403:1408No text annotation
Not in a motif group		homologous
HL_8C3A_030
HL_42097.1
HL_6YLH_0591/1/2840:2848No text annotation
Not in a motif group
HL_6YLH_0601/1/2897:2904No text annotation
Not in a motif group		homologous
HL_5TBW_062
HL_88526.2
HL_6YLH_0611/1/2920:2926No text annotation
Not in a motif group		geometric
HL_4TUW_002
HL_65572.2
HL_6YLH_0631/1/3025:3030GNRA
Not in a motif group		homologous
HL_5TBW_065
HL_42097.1
HL_6YLH_0641/1/3068:3073No text annotation
Not in a motif group		homologous
HL_8C3A_067
HL_46680.1
HL_6YLH_0651/1/3110:3124No text annotation
Not in a motif group		homologous
HL_8C3A_068
HL_56677.7
HL_6YLH_0661/1/3194:3197No text annotation
Not in a motif group		geometric
HL_4V88_192
HL_53837.1
HL_6YLH_0671/1/3240:3247No text annotation
Not in a motif group		homologous
HL_5TBW_069
HL_14449.2
HL_6YLH_0681/1/3303:3311No text annotation
Not in a motif group		geometric
HL_5TBW_070
HL_27930.1
HL_6YLH_0711/2/108:114No text annotation
Not in a motif group		homologous
HL_5TBW_075
HL_87939.1
HL_6YLH_0721/2/124:129No text annotation
Not in a motif group		homologous
HL_5TBW_076
HL_96851.2
HL_6YLH_0731/3/36:41No text annotation
Not in a motif group		geometric
HL_5TBW_185
HL_87939.1

Problematic loops

#loop idProblemSequence
HL_6YLH_009No text annotation
HL_6YLH_014No text annotation
HL_6YLH_018No text annotation
HL_6YLH_019No text annotation
HL_6YLH_020No text annotation
HL_6YLH_021No text annotation
HL_6YLH_023No text annotation
HL_6YLH_024No text annotation
HL_6YLH_027No text annotation
HL_6YLH_028No text annotation
HL_6YLH_029No text annotation
HL_6YLH_031No text annotation
HL_6YLH_032No text annotation
HL_6YLH_033No text annotation
HL_6YLH_034No text annotation
HL_6YLH_035No text annotation
HL_6YLH_036No text annotation
HL_6YLH_037No text annotation
HL_6YLH_038No text annotation
HL_6YLH_039No text annotation
HL_6YLH_040No text annotation
HL_6YLH_041No text annotation
HL_6YLH_042GNRA with one bulged base
HL_6YLH_043UNCG
HL_6YLH_044No text annotation
HL_6YLH_045No text annotation
HL_6YLH_046No text annotation
HL_6YLH_047No text annotation
HL_6YLH_048No text annotation
HL_6YLH_049No text annotation
HL_6YLH_050No text annotation
HL_6YLH_051No text annotation
HL_6YLH_052No text annotation
HL_6YLH_053No text annotation
HL_6YLH_054No text annotation
HL_6YLH_055No text annotation
HL_6YLH_056No text annotation
HL_6YLH_057No text annotation
HL_6YLH_058No text annotation
HL_6YLH_062GNRA
HL_6YLH_069No text annotation
HL_6YLH_070No text annotation
HL_6YLH_074No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6YLH_0011/1/7:8,
1/2/150:152		No text annotation
Not in a motif group		homologous
IL_8C3A_002
IL_61258.12
IL_6YLH_0021/1/12:15,
1/2/144:146		No text annotation
Not in a motif group		geometric
IL_4V9F_105
IL_95997.1
IL_6YLH_0031/1/27:28,
1/1/56:58		No text annotation
Not in a motif group		homologous
IL_8C3A_004
IL_76488.2
IL_6YLH_0041/1/31:38,
1/1/45:53		No text annotation
Not in a motif group		homologous
IL_8C3A_005
IL_35728.2
IL_6YLH_0051/1/82:89,
1/1/97:103		No text annotation
Not in a motif group		homologous
IL_8C3A_006
IL_88613.1
IL_6YLH_0061/1/123:124,
1/1/144:149		No text annotation
Not in a motif group		geometric
IL_5TBW_007
IL_19724.2
IL_6YLH_0071/1/125:127,
1/1/141:143		No text annotation
Not in a motif group		homologous
IL_8C3A_008
IL_95997.1
IL_6YLH_0081/1/163:165,
1/1/257:258		Single stack bend
Not in a motif group		homologous
IL_5TBW_009
IL_76488.2
IL_6YLH_0091/1/169:171,
1/1/247:253		No text annotation
Not in a motif group
IL_6YLH_0101/1/175:178,
1/1/238:243		No text annotation
Not in a motif group
IL_6YLH_0111/1/189:191,
1/1/204:205		Single bulged U
Not in a motif group		homologous
IL_5TBW_012
IL_83039.13
IL_6YLH_0121/1/272:274,
1/1/291:293		Isolated cWH basepair
Not in a motif group		geometric
IL_4KQ0_002
IL_51629.2
IL_6YLH_0131/1/337:339,
1/2/25:26		No text annotation
Not in a motif group		homologous
IL_8C3A_014
IL_37497.2
IL_6YLH_0141/1/376:379,
1/1/390:403		No text annotation
Not in a motif group		geometric
IL_5TBW_014
IL_60992.6
IL_6YLH_0151/1/404:410,
1/2/13:19		Triple sheared with non-canonical cWW
Not in a motif group		homologous
IL_5TBW_015
IL_66414.6
IL_6YLH_0161/1/429:431,
1/1/628:630		No text annotation
Not in a motif group		homologous
IL_5TBW_016
IL_51629.2
IL_6YLH_0181/1/512:513,
1/1/577:579		No text annotation
Not in a motif group		homologous
IL_8C3A_020
IL_37497.2
IL_6YLH_0191/1/517:525,
1/1/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_6YLH_0201/1/531:538,
1/1/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_07703.1
IL_6YLH_0211/1/668:670,
1/1/792:794		No text annotation
Not in a motif group		homologous
IL_8C3A_023
IL_95997.1
IL_6YLH_0221/1/680:684,
1/1/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_6YLH_0231/1/725:728,
1/1/741:745		No text annotation
Not in a motif group		homologous
IL_8C3A_025
IL_07235.1
IL_6YLH_0241/1/752:753,
1/1/779:781		Single bulged A
Not in a motif group		geometric
IL_4R4V_004
IL_37497.2
IL_6YLH_0251/1/755:756,
1/1/775:777		Single stack bend
Not in a motif group		geometric
IL_5J7L_032
IL_76488.2
IL_6YLH_0271/1/803:805,
1/1/938:940		No text annotation
Not in a motif group		homologous
IL_8C3A_029
IL_95997.1
IL_6YLH_0281/1/805:809,
1/1/931:938		No text annotation
Not in a motif group
IL_6YLH_0341/1/969:970,
1/1/1111:1113		No text annotation
Not in a motif group		homologous
IL_8C3A_038
IL_76488.2
IL_6YLH_0351/1/976:981,
1/1/1102:1105		No text annotation
Not in a motif group
IL_6YLH_0361/1/983:985,
1/1/1099:1100		No text annotation
Not in a motif group		homologous
IL_8C3A_040
IL_00225.2
IL_6YLH_0391/1/1120:1122,
1/1/1136:1138		No text annotation
Not in a motif group		homologous
IL_8C3A_049
IL_95997.1
IL_6YLH_0401/1/1167:1171,
1/1/1328:1332		No text annotation
Not in a motif group		homologous
IL_8C3A_051
IL_89002.2
IL_6YLH_0411/1/1173:1180,
1/1/1325:1326		SSU/LSU pseudoknot
Not in a motif group		homologous
IL_5TBW_049
IL_15861.7
IL_6YLH_0421/1/1180:1182,
1/1/1324:1325		Single bulged U
Not in a motif group		geometric
IL_5TBW_050
IL_83039.13
IL_6YLH_0431/1/1186:1194,
1/1/1314:1320		No text annotation
Not in a motif group
IL_6YLH_0441/1/1194:1206,
1/1/1298:1314		No text annotation
Not in a motif group
IL_6YLH_0451/1/1207:1209,
1/1/1296:1297		Single bulged U
Not in a motif group		homologous
IL_5TBW_053
IL_83039.13
IL_6YLH_0461/1/1218:1226,
1/1/1283:1287		Kink-turn
Not in a motif group		homologous
IL_5TBW_054
IL_90538.4
IL_6YLH_0491/1/1376:1378,
1/1/1428:1431		No text annotation
Not in a motif group		homologous
IL_8C3A_061
IL_52767.2
IL_6YLH_0501/1/1385:1387,
1/1/1420:1421		No text annotation
Not in a motif group		homologous
IL_8C3A_062
IL_37497.2
IL_6YLH_0511/1/1388:1395,
1/1/1415:1419		No text annotation
Not in a motif group		homologous
IL_8C3A_063
IL_70923.2
IL_6YLH_0521/1/1398:1400,
1/1/1411:1412		Single bulged A
Not in a motif group		geometric
IL_5WWT_001
IL_37497.2
IL_6YLH_0531/1/1444:1450,
1/1/2354:2359		7x6 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_061
IL_76042.2
IL_6YLH_0811/1/2391:2394,
1/1/2986:2988		No text annotation
Not in a motif group		homologous
IL_8C3A_096
IL_63450.2
IL_6YLH_0911/1/2835:2839,
1/1/2849:2853		No text annotation
Not in a motif group		homologous
IL_8C3A_114
NA
IL_6YLH_0921/1/2878:2882,
1/1/2940:2948		No text annotation
Not in a motif group
IL_6YLH_0931/1/2889:2891,
1/1/2912:2914		No text annotation
Not in a motif group		geometric
IL_5TBW_110
IL_51629.2
IL_6YLH_0941/1/2891:2892,
1/1/2909:2912		Minor groove platform with intercalation
Not in a motif group		homologous
IL_5TBW_111
IL_95601.3
IL_6YLH_0951/1/2918:2920,
1/1/2926:2928		No text annotation
Not in a motif group		geometric
IL_1Z7F_002
IL_95997.1
IL_6YLH_0971/1/3004:3007,
1/1/3139:3144		No text annotation
Not in a motif group		homologous
IL_8C3A_123
IL_09705.9
IL_6YLH_0981/1/3012:3014,
1/1/3040:3042		No text annotation
Not in a motif group		homologous
IL_8C3A_124
IL_95997.1
IL_6YLH_0991/1/3018:3025,
1/1/3030:3036		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		geometric
IL_5TBW_116
IL_04346.7
IL_6YLH_1001/1/3047:3051,
1/1/3091:3094		No text annotation
Not in a motif group		homologous
IL_8C3A_126
IL_37712.2
IL_6YLH_1011/1/3054:3059,
1/1/3084:3088		No text annotation
Not in a motif group		homologous
IL_8C3A_127
IL_17136.1
IL_6YLH_1021/1/3063:3064,
1/1/3077:3080		No text annotation
Not in a motif group		homologous
IL_8C3A_128
IL_71530.2
IL_6YLH_1031/1/3103:3107,
1/1/3127:3131		No text annotation
Not in a motif group		homologous
IL_8C3A_129
IL_89002.2
IL_6YLH_1041/1/3177:3179,
1/1/3210:3211		Single bulged A
Not in a motif group		geometric
IL_5TBW_123
IL_37497.2
IL_6YLH_1051/1/3179:3188,
1/1/3204:3210		No text annotation
Not in a motif group		homologous
IL_5TBW_124
IL_15174.1
IL_6YLH_1061/1/3193:3194,
1/1/3197:3199		Single bulged U
Not in a motif group		homologous
IL_5TBW_125
IL_83039.13
IL_6YLH_1071/1/3225:3229,
1/1/3258:3260		No text annotation
Not in a motif group		homologous
IL_8C3A_133
IL_19389.6
IL_6YLH_1081/1/3233:3235,
1/1/3252:3254		No text annotation
Not in a motif group		geometric
IL_3D0U_006
IL_95997.1
IL_6YLH_1091/1/3235:3238,
1/1/3249:3252		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5TBW_128
IL_30621.2
IL_6YLH_1101/1/3300:3303,
1/1/3311:3314		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5TBW_129
IL_30621.2
IL_6YLH_1111/1/3318:3320,
1/1/3387:3388		Single bulged U
Not in a motif group		homologous
IL_5TBW_130
IL_83039.13
IL_6YLH_1121/1/3324:3325,
1/1/3381:3383		Single bulged U
Not in a motif group		homologous
IL_5TBW_131
IL_83039.13
IL_6YLH_1131/1/3328:3330,
1/1/3373:3378		No text annotation
Not in a motif group		homologous
IL_8C3A_138
IL_90933.2
IL_6YLH_1141/1/3332:3337,
1/1/3367:3371		No text annotation
Not in a motif group		homologous
IL_8C3A_139
IL_83162.5
IL_6YLH_1151/1/3340:3345,
1/1/3360:3364		No text annotation
Not in a motif group
IL_6YLH_1161/2/44:64,
1/2/96:100		No text annotation
Not in a motif group		geometric
IL_5TBW_144
IL_44998.1
IL_6YLH_1171/2/64:66,
1/2/93:96		Isolated non-canonical cWW with bulges
Not in a motif group		geometric
IL_5TBW_145
IL_82068.2
IL_6YLH_1181/2/68:69,
1/2/89:91		Single bulged U
Not in a motif group		homologous
IL_5TBW_146
IL_83039.13
IL_6YLH_1191/3/15:16,
1/3/63:65		Single bulged A
Not in a motif group		homologous
IL_5TBW_372
IL_37497.2
IL_6YLH_1201/3/21:27,
1/3/53:58		No text annotation
Not in a motif group		geometric
IL_5TBW_373
IL_10207.2
IL_6YLH_1211/3/27:29,
1/3/49:53		No text annotation
Not in a motif group
IL_6YLH_1221/3/29:30,
1/3/47:49		Single stack bend
Not in a motif group		homologous
IL_5TBW_375
IL_76488.2
IL_6YLH_1231/3/32:36,
1/3/41:45		Symmetric double minor groove platform
Not in a motif group		homologous
IL_5TBW_376
IL_58103.6
IL_6YLH_1241/3/72:80,
1/3/100:106		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_377
IL_04346.7
IL_6YLH_1251/3/84:87,
1/3/94:96		No text annotation
Not in a motif group		homologous
IL_5TBW_378
IL_95997.1

Problematic loops

#loop idProblemSequence
IL_6YLH_017No text annotation
IL_6YLH_026No text annotation
IL_6YLH_029Single bulged G
IL_6YLH_030No text annotation
IL_6YLH_031Major groove platform with extra cWW
IL_6YLH_032Single bulged U
IL_6YLH_033Multiple bulged bases
IL_6YLH_037No text annotation
IL_6YLH_038Single stack bend
IL_6YLH_047No text annotation
IL_6YLH_048No text annotation
IL_6YLH_054No text annotation
IL_6YLH_055No text annotation
IL_6YLH_056No text annotation
IL_6YLH_057Multiple bulged bases
IL_6YLH_058No text annotation
IL_6YLH_059Triple sheared
IL_6YLH_060No text annotation
IL_6YLH_061Single bulged C
IL_6YLH_062No text annotation
IL_6YLH_063No text annotation
IL_6YLH_064No text annotation
IL_6YLH_065Kink-turn
IL_6YLH_066No text annotation
IL_6YLH_067No text annotation
IL_6YLH_068No text annotation
IL_6YLH_069Intercalated tWH
IL_6YLH_070No text annotation
IL_6YLH_071No text annotation
IL_6YLH_072No text annotation
IL_6YLH_073No text annotation
IL_6YLH_074Kink-turn related
IL_6YLH_075No text annotation
IL_6YLH_076No text annotation
IL_6YLH_077Single bulged U
IL_6YLH_078No text annotation
IL_6YLH_079No text annotation
IL_6YLH_080Tandem non-canonical cWW pairs
IL_6YLH_082Single bulged U
IL_6YLH_083No text annotation
IL_6YLH_084No text annotation
IL_6YLH_085No text annotation
IL_6YLH_086No text annotation
IL_6YLH_087No text annotation
IL_6YLH_088Isolated tHS basepair with bulges
IL_6YLH_089Tandem non-canonical cWW pairs
IL_6YLH_090Isolated non-canonical cWW with bulges
IL_6YLH_096No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6YLH_0011/1/113:123,
1/1/149:158,
1/1/263:267		No text annotation
Not in a motif group
J3_6YLH_0021/1/369:376,
1/1/403:404,
1/2/19:20		No text annotation
Not in a motif group		homologous
J3_5TBW_002
NA
J3_6YLH_0031/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA
J3_6YLH_0061/1/986:987,
1/1/1062:1066,
1/1/1092:1098		No text annotation
Not in a motif group
J3_6YLH_0151/1/2886:2889,
1/1/2914:2916,
1/1/2930:2936		No text annotation
Not in a motif group		homologous
J3_8C3A_011
NA
J3_6YLH_0161/1/3298:3300,
1/1/3314:3318,
1/1/3388:3390		No text annotation
Not in a motif group		homologous
J3_5TBW_015
NA
J3_6YLH_0171/3/9:14,
1/3/66:67,
1/3/111:112		No text annotation
Not in a motif group		homologous
J3_5TBW_045
NA

Problematic loops

#loop idProblemSequence
J3_6YLH_004No text annotation
J3_6YLH_005No text annotation
J3_6YLH_007No text annotation
J3_6YLH_008No text annotation
J3_6YLH_009No text annotation
J3_6YLH_010No text annotation
J3_6YLH_011No text annotation
J3_6YLH_012No text annotation
J3_6YLH_013No text annotation
J3_6YLH_014No text annotation

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