6ZM5 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6ZM5_001 | 1/A/1722:1729 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_6ZM5_002 | 1/A/1746:1752 | No text annotation Not in a motif group | geometric HL_7A0S_008 HL_67216.7 | |
| HL_6ZM5_003 | 1/A/1786:1791 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_6ZM5_004 | 1/A/1831:1839 | No text annotation Not in a motif group | ||
| HL_6ZM5_005 | 1/A/1847:1856 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_89380.2 | |
| HL_6ZM5_006 | 1/A/1884:1889 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6ZM5_007 | 1/A/1934:1940 | No text annotation Not in a motif group | geometric HL_5J7L_179 HL_42097.1 | |
| HL_6ZM5_008 | 1/A/1954:1963 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_6ZM5_009 | 1/A/1988:1996 | No text annotation Not in a motif group | geometric HL_5TBW_021 HL_33817.1 | |
| HL_6ZM5_010 | 1/A/2035:2040 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_6ZM5_011 | 1/A/2064:2075 | No text annotation Not in a motif group | ||
| HL_6ZM5_012 | 1/A/2107:2114 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_6ZM5_013 | 1/A/2129:2136 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_6ZM5_014 | 1/A/2175:2185 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_07145.1 | |
| HL_6ZM5_015 | 1/A/2202:2209 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
| HL_6ZM5_016 | 1/A/2279:2286 | No text annotation Not in a motif group | ||
| HL_6ZM5_017 | 1/A/2319:2324 | No text annotation Not in a motif group | geometric HL_6DME_002 HL_03562.2 | |
| HL_6ZM5_019 | 1/A/2400:2403 | No text annotation Not in a motif group | geometric HL_5F9R_002 HL_38927.2 | |
| HL_6ZM5_020 | 1/A/2428:2435 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_6ZM5_021 | 1/A/2497:2507 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_6ZM5_022 | 1/A/2518:2532 | No text annotation Not in a motif group | ||
| HL_6ZM5_023 | 1/A/2555:2560 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6ZM5_024 | 1/A/2574:2583 | No text annotation Not in a motif group | ||
| HL_6ZM5_025 | 1/A/2612:2620 | No text annotation Not in a motif group | homologous HL_7A0S_048 HL_51824.1 | |
| HL_6ZM5_026 | 1/A/2690:2699 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_6ZM5_027 | 1/A/2812:2820 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
| HL_6ZM5_028 | 1/A/2828:2840 | No text annotation Not in a motif group | ||
| HL_6ZM5_029 | 1/A/2862:2870 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_6ZM5_030 | 1/A/2902:2907 | GNRA Not in a motif group | geometric HL_5B2P_001 HL_42097.1 | |
| HL_6ZM5_031 | 1/A/2958:2966 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_6ZM5_032 | 1/A/3015:3022 | No text annotation Not in a motif group | homologous HL_4WF9_057 HL_88526.2 | |
| HL_6ZM5_033 | 1/A/3038:3044 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_6ZM5_034 | 1/A/3081:3086 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_6ZM5_035 | 1/A/3126:3131 | GNRA Not in a motif group | geometric HL_5B2T_003 HL_42097.1 | |
| HL_6ZM5_036 | 1/A/3154:3159 | No text annotation Not in a motif group | geometric HL_5FMZ_001 HL_27930.1 | |
| HL_6ZM5_037 | 1/A/3176:3193 | No text annotation Not in a motif group | ||
| HL_6ZM5_038 | 1/A/3216:3224 | No text annotation Not in a motif group | geometric HL_7RQB_068 HL_27930.1 | |
| HL_6ZM5_039 | 1/AA/654:664 | No text annotation Not in a motif group | geometric HL_4LFB_001 HL_89881.2 | |
| HL_6ZM5_040 | 1/AA/701:708 | No text annotation Not in a motif group | ||
| HL_6ZM5_041 | 1/AA/734:740 | No text annotation Not in a motif group | geometric HL_4AOB_001 HL_46680.1 | |
| HL_6ZM5_042 | 1/AA/768:773 | GNRA Not in a motif group | geometric HL_5TBW_019 HL_42097.1 | |
| HL_6ZM5_043 | 1/AA/792:796 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_6ZM5_044 | 1/AA/804:809 | No text annotation Not in a motif group | ||
| HL_6ZM5_045 | 1/AA/842:847 | GNRA Not in a motif group | geometric HL_4WF9_020 HL_42097.1 | |
| HL_6ZM5_046 | 1/AA/894:899 | Other HL Not in a motif group | geometric HL_1G1X_003 HL_87030.2 | |
| HL_6ZM5_047 | 1/AA/989:998 | No text annotation Not in a motif group | geometric HL_4LFB_015 HL_12326.1 | |
| HL_6ZM5_048 | 1/AA/1023:1028 | Other HL Not in a motif group | geometric HL_5J7L_016 HL_87030.2 | |
| HL_6ZM5_049 | 1/AA/1074:1084 | No text annotation Not in a motif group | geometric HL_4LFB_017 HL_12326.1 | |
| HL_6ZM5_050 | 1/AA/1115:1126 | No text annotation Not in a motif group | ||
| HL_6ZM5_051 | 1/AA/1150:1155 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_6ZM5_052 | 1/AA/1217:1226 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_6ZM5_053 | 1/AA/1281:1287 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_6ZM5_054 | 1/AA/1310:1315 | No text annotation Not in a motif group | ||
| HL_6ZM5_055 | 1/AA/1373:1379 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6ZM5_056 | 1/AA/1399:1407 | T-loop with 2 bulged bases not stacked Not in a motif group | geometric HL_4FRN_005 HL_89380.2 | |
| HL_6ZM5_057 | 1/AA/1440:1450 | No text annotation Not in a motif group | geometric HL_5J7L_029 HL_96366.1 | |
| HL_6ZM5_058 | 1/AA/1522:1528 | No text annotation Not in a motif group | geometric HL_5M3H_001 HL_27930.1 | |
| HL_6ZM5_059 | 1/AA/1580:1585 | Other HL Not in a motif group | geometric HL_4V88_222 HL_16173.1 | |
| HL_6ZM5_060 | 1/B/1613:1622 | No text annotation Not in a motif group | geometric HL_5B63_003 HL_25462.2 | |
| HL_6ZM5_061 | 1/B/1630:1638 | Guanidine riboswitch aptamer P2 hairpin Not in a motif group | geometric HL_5T83_002 HL_53597.2 | |
| HL_6ZM5_062 | 1/B/1651:1658 | No text annotation Not in a motif group | geometric HL_5TBW_076 HL_96851.2 | |
| HL_6ZM5_063 | 1/w/12:23 | No text annotation Not in a motif group | ||
| HL_6ZM5_064 | 1/w/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4YCO_002 HL_53597.2 | |
| HL_6ZM5_065 | 1/w/53:61 | No text annotation Not in a motif group | ||
| HL_6ZM5_066 | 1/x/13:22 | No text annotation Not in a motif group | homologous HL_5B63_003 HL_25462.2 | |
| HL_6ZM5_067 | 1/x/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_6ZM5_068 | 1/x/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V9Q_215 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6ZM5_018 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6ZM5_001 | 1/A/1672:1678, 1/A/1797:1816 | No text annotation Not in a motif group | ||
| IL_6ZM5_002 | 1/A/1682:1683, 1/A/1768:1770 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_6ZM5_003 | 1/A/1739:1745, 1/A/1753:1758 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4V9F_106 IL_76042.2 | |
| IL_6ZM5_004 | 1/A/1845:1847, 1/A/1856:1858 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
| IL_6ZM5_005 | 1/A/1877:1879, 1/A/1895:1897 | No text annotation Not in a motif group | geometric IL_3GM7_002 IL_95997.1 | |
| IL_6ZM5_006 | 1/A/1880:1883, 1/A/1890:1894 | No text annotation Not in a motif group | ||
| IL_6ZM5_007 | 1/A/1904:1906, 1/A/2016:2018 | No text annotation Not in a motif group | homologous IL_4WF9_020 IL_95997.1 | |
| IL_6ZM5_008 | 1/A/1906:1910, 1/A/2009:2016 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
| IL_6ZM5_009 | 1/A/1913:1915, 1/A/2004:2006 | No text annotation Not in a motif group | geometric IL_5TBW_079 IL_95997.1 | |
| IL_6ZM5_010 | 1/A/1925:1927, 1/A/1977:1979 | No text annotation Not in a motif group | geometric IL_5UNE_001 IL_53251.2 | |
| IL_6ZM5_011 | 1/A/1929:1930, 1/A/1973:1975 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_6ZM5_012 | 1/A/1948:1951, 1/A/1966:1968 | Major groove platform with extra cWW Not in a motif group | homologous IL_7A0S_019 IL_05564.2 | |
| IL_6ZM5_013 | 1/A/1985:1987, 1/A/1997:2001 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_6ZM5_014 | 1/A/2046:2048, 1/A/2091:2094 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_6ZM5_015 | 1/A/2057:2063, 1/A/2076:2082 | No text annotation Not in a motif group | ||
| IL_6ZM5_016 | 1/A/2145:2147, 1/A/2254:2255 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_6ZM5_017 | 1/A/2149:2153, 1/A/2248:2252 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_6ZM5_018 | 1/A/2168:2170, 1/A/2190:2192 | Isolated near basepair Not in a motif group | geometric IL_2ZI0_001 IL_52767.2 | |
| IL_6ZM5_019 | 1/A/2170:2173, 1/A/2187:2190 | No text annotation Not in a motif group | geometric IL_5D8H_002 IL_23544.2 | |
| IL_6ZM5_020 | 1/A/2197:2200, 1/A/2211:2212 | No text annotation Not in a motif group | homologous IL_6PRV_002 NA | |
| IL_6ZM5_021 | 1/A/2306:2313, 1/A/2674:2680 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_6ZM5_022 | 1/A/2329:2333, 1/A/2441:2448 | No text annotation Not in a motif group | ||
| IL_6ZM5_023 | 1/A/2349:2351, 1/A/2362:2364 | No text annotation Not in a motif group | ||
| IL_6ZM5_024 | 1/A/2456:2461, 1/A/2666:2668 | No text annotation Not in a motif group | ||
| IL_6ZM5_025 | 1/A/2467:2469, 1/A/2658:2660 | Isolated tWW turn Not in a motif group | homologous IL_7A0S_060 IL_54997.7 | |
| IL_6ZM5_026 | 1/A/2470:2473, 1/A/2656:2657 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_6ZM5_027 | 1/A/2473:2478, 1/A/2653:2656 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_82842.2 | |
| IL_6ZM5_028 | 1/A/2478:2487, 1/A/2648:2653 | No text annotation Not in a motif group | ||
| IL_6ZM5_029 | 1/A/2490:2491, 1/A/2643:2645 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_6ZM5_030 | 1/A/2548:2551, 1/A/2566:2567 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_6ZM5_031 | 1/A/2552:2553, 1/A/2562:2565 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_6ZM5_032 | 1/A/2596:2597, 1/A/2627:2630 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_6ZM5_033 | 1/A/2597:2608, 1/A/2624:2627 | No text annotation Not in a motif group | ||
| IL_6ZM5_034 | 1/A/2712:2715, 1/A/3104:3106 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_091 IL_63450.2 | |
| IL_6ZM5_035 | 1/A/2717:2719, 1/A/3099:3102 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_6ZM5_036 | 1/A/2730:2732, 1/A/2929:2930 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_6ZM5_037 | 1/A/2733:2734, 1/A/2925:2928 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_6ZM5_038 | 1/A/2744:2747, 1/A/2801:2803 | No text annotation Not in a motif group | ||
| IL_6ZM5_039 | 1/A/2753:2759, 1/A/2787:2795 | No text annotation Not in a motif group | ||
| IL_6ZM5_040 | 1/A/2849:2855, 1/A/2877:2889 | No text annotation Not in a motif group | ||
| IL_6ZM5_041 | 1/A/2856:2860, 1/A/2872:2876 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_6ZM5_042 | 1/A/2940:2941, 1/A/2985:2987 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_6ZM5_043 | 1/A/2941:2942, 1/A/2983:2985 | Major groove platform Not in a motif group | homologous IL_7A0S_084 IL_27635.1 | |
| IL_6ZM5_044 | 1/A/2943:2946, 1/A/2980:2982 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_6ZM5_045 | 1/A/2946:2948, 1/A/2976:2980 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_092 IL_92788.2 | |
| IL_6ZM5_046 | 1/A/2953:2955, 1/A/2968:2971 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_6ZM5_047 | 1/A/2955:2957, 1/A/2967:2968 | Minor groove platform Not in a motif group | geometric IL_2QWY_009 IL_42622.2 | |
| IL_6ZM5_048 | 1/A/2994:2995, 1/A/3067:3069 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_6ZM5_049 | 1/A/2997:2999, 1/A/3061:3065 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7A0S_089 IL_90933.2 | |
| IL_6ZM5_050 | 1/A/2999:3000, 1/A/3058:3061 | No text annotation Not in a motif group | geometric IL_4WF9_096 IL_71530.2 | |
| IL_6ZM5_051 | 1/A/3008:3010, 1/A/3027:3031 | No text annotation Not in a motif group | ||
| IL_6ZM5_052 | 1/A/3078:3079, 1/A/3088:3090 | No text annotation Not in a motif group | ||
| IL_6ZM5_053 | 1/A/3115:3117, 1/A/3139:3141 | Isolated cWH basepair Not in a motif group | geometric IL_3D0M_002 IL_51629.2 | |
| IL_6ZM5_054 | 1/A/3119:3126, 1/A/3131:3137 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_6ZM5_055 | 1/A/3148:3152, 1/A/3161:3163 | C-loop Not in a motif group | geometric IL_7RQB_051 IL_63596.6 | |
| IL_6ZM5_056 | 1/A/3212:3213, 1/A/3227:3230 | Multiple bulged bases Not in a motif group | geometric IL_5WTK_001 IL_16396.2 | |
| IL_6ZM5_057 | 1/AA/649:651, 1/AA/667:668 | Single bulged U Not in a motif group | geometric IL_1S03_005 IL_83039.13 | |
| IL_6ZM5_058 | 1/AA/674:676, 1/AA/921:923 | No text annotation Not in a motif group | geometric IL_1NBS_006 IL_95997.1 | |
| IL_6ZM5_059 | 1/AA/685:686, 1/AA/859:861 | Single bulged A Not in a motif group | geometric IL_5J7L_002 IL_37497.2 | |
| IL_6ZM5_060 | 1/AA/690:692, 1/AA/822:823 | Single bulged A Not in a motif group | geometric IL_4R4V_004 IL_37497.2 | |
| IL_6ZM5_061 | 1/AA/694:696, 1/AA/819:820 | Minor groove platform Not in a motif group | geometric IL_4LFB_004 IL_93353.1 | |
| IL_6ZM5_062 | 1/AA/727:729, 1/AA/744:747 | No text annotation Not in a motif group | geometric IL_4V9F_053 IL_46796.1 | |
| IL_6ZM5_063 | 1/AA/729:732, 1/AA/742:744 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_6ZM5_064 | 1/AA/756:761, 1/AA/779:786 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_6CZR_123 IL_45067.2 | |
| IL_6ZM5_065 | 1/AA/762:765, 1/AA/777:778 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_1NTA_003 IL_50694.2 | |
| IL_6ZM5_066 | 1/AA/765:766, 1/AA/775:777 | No text annotation Not in a motif group | ||
| IL_6ZM5_067 | 1/AA/830:832, 1/AA/855:856 | Single bulged U Not in a motif group | geometric IL_4V9F_074 IL_83039.13 | |
| IL_6ZM5_068 | 1/AA/834:838, 1/AA/852:853 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6ZM5_069 | 1/AA/838:839, 1/AA/850:852 | Single bulged A Not in a motif group | geometric IL_2QUX_002 IL_37497.2 | |
| IL_6ZM5_070 | 1/AA/876:885, 1/AA/910:913 | No text annotation Not in a motif group | ||
| IL_6ZM5_071 | 1/AA/887:893, 1/AA/900:908 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6ZM5_072 | 1/AA/935:941, 1/AA/1133:1134 | No text annotation Not in a motif group | geometric IL_5J7L_026 IL_69996.1 | |
| IL_6ZM5_073 | 1/AA/946:950, 1/AA/1044:1049 | No text annotation Not in a motif group | ||
| IL_6ZM5_074 | 1/AA/974:980, 1/AA/1008:1014 | No text annotation Not in a motif group | ||
| IL_6ZM5_075 | 1/AA/982:984, 1/AA/1004:1006 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_6ZM5_076 | 1/AA/986:988, 1/AA/999:1002 | No text annotation Not in a motif group | ||
| IL_6ZM5_077 | 1/AA/1020:1022, 1/AA/1029:1030 | Other IL Not in a motif group | geometric IL_3WBM_004 IL_76223.2 | |
| IL_6ZM5_078 | 1/AA/1062:1066, 1/AA/1092:1093 | Left turn Not in a motif group | geometric IL_5J7L_036 IL_29346.1 | |
| IL_6ZM5_079 | 1/AA/1067:1071, 1/AA/1087:1091 | tSH-tHW-tHS Not in a motif group | geometric IL_5J7L_037 IL_17136.1 | |
| IL_6ZM5_080 | 1/AA/1109:1111, 1/AA/1130:1132 | No text annotation Not in a motif group | geometric IL_5Y7M_007 IL_95997.1 | |
| IL_6ZM5_081 | 1/AA/1139:1147, 1/AA/1158:1164 | No text annotation Not in a motif group | ||
| IL_6ZM5_082 | 1/AA/1175:1176, 1/AA/1477:1479 | Single bulged A Not in a motif group | geometric IL_6CZR_147 IL_37497.2 | |
| IL_6ZM5_083 | 1/AA/1178:1180, 1/AA/1474:1475 | Single bulged G Not in a motif group | geometric IL_6CZR_148 IL_00225.2 | |
| IL_6ZM5_084 | 1/AA/1186:1190, 1/AA/1464:1468 | No text annotation Not in a motif group | ||
| IL_6ZM5_085 | 1/AA/1208:1209, 1/AA/1355:1357 | Minor groove platform Not in a motif group | geometric IL_7A0S_028 IL_42622.2 | |
| IL_6ZM5_086 | 1/AA/1244:1252, 1/AA/1340:1345 | No text annotation Not in a motif group | ||
| IL_6ZM5_087 | 1/AA/1253:1255, 1/AA/1338:1339 | Single bulged C Not in a motif group | geometric IL_6ZDP_001 IL_61258.12 | |
| IL_6ZM5_088 | 1/AA/1257:1261, 1/AA/1334:1336 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_6ZM5_089 | 1/AA/1262:1263, 1/AA/1329:1333 | Minor groove platform Not in a motif group | geometric IL_3RW6_003 IL_93353.1 | |
| IL_6ZM5_090 | 1/AA/1265:1266, 1/AA/1325:1327 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_6ZM5_091 | 1/AA/1266:1268, 1/AA/1323:1325 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_95997.1 | |
| IL_6ZM5_092 | 1/AA/1274:1277, 1/AA/1298:1301 | Double sheared Not in a motif group | geometric IL_1SAQ_002 IL_09705.9 | |
| IL_6ZM5_093 | 1/AA/1278:1279, 1/AA/1289:1297 | No text annotation Not in a motif group | ||
| IL_6ZM5_094 | 1/AA/1388:1393, 1/AA/1413:1418 | No text annotation Not in a motif group | ||
| IL_6ZM5_095 | 1/AA/1483:1485, 1/AA/1566:1569 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_6ZM5_096 | 1/AA/1485:1488, 1/AA/1562:1566 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6ZM5_097 | 1/AA/1489:1491, 1/AA/1559:1561 | No text annotation Not in a motif group | geometric IL_3GM7_006 IL_95997.1 | |
| IL_6ZM5_098 | 1/AA/1491:1495, 1/AA/1554:1559 | No text annotation Not in a motif group | ||
| IL_6ZM5_099 | 1/AA/1500:1504, 1/AA/1546:1549 | UAA/GAN related Not in a motif group | geometric IL_2R8S_002 IL_77691.1 | |
| IL_6ZM5_100 | 1/AA/1507:1510, 1/AA/1540:1543 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_128 IL_30621.2 | |
| IL_6ZM5_101 | 1/AA/1510:1511, 1/AA/1538:1540 | No text annotation Not in a motif group | ||
| IL_6ZM5_102 | 1/AA/1511:1514, 1/AA/1535:1538 | No text annotation Not in a motif group | ||
| IL_6ZM5_103 | 1/AA/1516:1521, 1/AA/1529:1533 | No text annotation Not in a motif group | ||
| IL_6ZM5_104 | 1/B/1627:1629, 1/B/1639:1641 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6ZM5_001 | 1/A/1678:1681, 1/A/1771:1785, 1/A/1792:1797 | No text annotation Not in a motif group | ||
| J3_6ZM5_002 | 1/A/1915:1921, 1/A/1983:1985, 1/A/2001:2004 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_6ZM5_003 | 1/A/1930:1932, 1/A/1942:1946, 1/A/1970:1973 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_6ZM5_004 | 1/A/2336:2343, 1/A/2423:2427, 1/A/2436:2438 | No text annotation Not in a motif group | ||
| J3_6ZM5_005 | 1/A/2343:2345, 1/A/2368:2375, 1/A/2421:2423 | No text annotation Not in a motif group | ||
| J3_6ZM5_006 | 1/A/3004:3007, 1/A/3032:3034, 1/A/3048:3054 | No text annotation Not in a motif group | homologous J3_4WF9_009 NA | |
| J3_6ZM5_007 | 1/AA/677:680, 1/AA/866:872, 1/AA/917:920 | No text annotation Not in a motif group | ||
| J3_6ZM5_008 | 1/AA/687:690, 1/AA/823:830, 1/AA/856:858 | No text annotation Not in a motif group | ||
| J3_6ZM5_009 | 1/AA/973:974, 1/AA/1014:1020, 1/AA/1030:1031 | No text annotation Not in a motif group | ||
| J3_6ZM5_010 | 1/AA/1192:1194, 1/AA/1428:1434, 1/AA/1456:1462 | No text annotation Not in a motif group | ||
| J3_6ZM5_011 | 1/AA/1198:1201, 1/AA/1364:1366, 1/AA/1421:1424 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_6ZM5_012 | 1/AA/1210:1216, 1/AA/1227:1238, 1/AA/1351:1354 | No text annotation Not in a motif group | ||
| J3_6ZM5_013 | 1/AA/1268:1273, 1/AA/1302:1308, 1/AA/1317:1323 | No text annotation Not in a motif group | ||
| J3_6ZM5_014 | 1/AA/1366:1371, 1/AA/1381:1388, 1/AA/1418:1421 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: