RNA 3D Hub //

3OW2 Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_3OW2_0021/0/83:91No text annotation
Not in a motif group		homologous
HL_4V9F_002
HL_96598.1
HL_3OW2_0061/0/164:171No text annotation
Not in a motif group		homologous
HL_4V9F_006
HL_06192.2
HL_3OW2_0071/0/195:201No text annotation
Not in a motif group		homologous
HL_4V9F_007
HL_85680.1
HL_3OW2_0111/0/326:330No text annotation
Not in a motif group		homologous
HL_4V9F_011
HL_75407.1
HL_3OW2_0141/0/416:424No text annotation
Not in a motif group		homologous
HL_4V9F_014
HL_12078.2
HL_3OW2_0181/0/623:632No text annotation
Not in a motif group		geometric
HL_7RQB_018
HL_89380.2
HL_3OW2_0281/0/1054:1060GNRA
Not in a motif group		homologous
HL_4V9F_028
HL_42097.1
HL_3OW2_0291/0/1076:1083No text annotation
Not in a motif group		homologous
HL_4V9F_029
HL_64430.2
HL_3OW2_0321/0/1274:1282No text annotation
Not in a motif group		homologous
HL_4V9F_032
HL_49288.1
HL_3OW2_0361/0/1468:1474GNRA
Not in a motif group		homologous
HL_4V9F_036
HL_42097.1
HL_3OW2_0591/0/2389:2399No text annotation
Not in a motif group		homologous
HL_4V9F_059
HL_20146.1
HL_3OW2_0611/0/2442:2450No text annotation
Not in a motif group		homologous
HL_4V9F_061
HL_12078.2
HL_3OW2_0641/0/2585:2593No text annotation
Not in a motif group
HL_3OW2_0681/0/2780:2794No text annotation
Not in a motif group		homologous
HL_4V9F_068
HL_56677.7
HL_3OW2_0691/0/2836:2844No text annotation
Not in a motif group		homologous
HL_4V9F_069
HL_27930.1

Problematic loops

#loop idProblemSequence
HL_3OW2_001No text annotation
HL_3OW2_003No text annotation
HL_3OW2_004No text annotation
HL_3OW2_005No text annotation
HL_3OW2_008No text annotation
HL_3OW2_009GNRA
HL_3OW2_010T-loop with 1 bulged base
HL_3OW2_012No text annotation
HL_3OW2_013No text annotation
HL_3OW2_015GNRA
HL_3OW2_016GNRA with one bulged base
HL_3OW2_017GNRA
HL_3OW2_019No text annotation
HL_3OW2_020GNRA
HL_3OW2_021No text annotation
HL_3OW2_022Other HL
HL_3OW2_023GNRA
HL_3OW2_024No text annotation
HL_3OW2_025No text annotation
HL_3OW2_026No text annotation
HL_3OW2_027No text annotation
HL_3OW2_030No text annotation
HL_3OW2_031No text annotation
HL_3OW2_033GNRA
HL_3OW2_034T-loop with 2 stacked bulged bases
HL_3OW2_035No text annotation
HL_3OW2_037No text annotation
HL_3OW2_038No text annotation
HL_3OW2_039Other HL
HL_3OW2_040GNRA
HL_3OW2_041No text annotation
HL_3OW2_042No text annotation
HL_3OW2_043No text annotation
HL_3OW2_044UNCG
HL_3OW2_045GNRA
HL_3OW2_046No text annotation
HL_3OW2_047No text annotation
HL_3OW2_048GNRA
HL_3OW2_049No text annotation
HL_3OW2_050No text annotation
HL_3OW2_051No text annotation
HL_3OW2_052No text annotation
HL_3OW2_053No text annotation
HL_3OW2_054GNRA
HL_3OW2_055No text annotation
HL_3OW2_056No text annotation
HL_3OW2_057No text annotation
HL_3OW2_058No text annotation
HL_3OW2_060GNRA
HL_3OW2_062No text annotation
HL_3OW2_063No text annotation
HL_3OW2_065GNRA
HL_3OW2_066No text annotation
HL_3OW2_067Ribsomal LSU H95
HL_3OW2_070GNRA
HL_3OW2_071No text annotation
HL_3OW2_072No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_3OW2_0041/0/77:81,
1/0/93:100		Kink-turn
Not in a motif group		homologous
IL_4V9F_004
IL_70923.2
IL_3OW2_0061/0/158:164,
1/0/171:178		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		geometric
IL_4V9F_006
IL_04346.7
IL_3OW2_0121/0/287:290,
1/0/362:365		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_6JDV_002
IL_30621.2
IL_3OW2_0151/0/487:491,
1/0/501:515		No text annotation
Not in a motif group		geometric
IL_4V9F_014
IL_31504.1
IL_3OW2_0161/0/548:553,
1/0/606:608		No text annotation
Not in a motif group		homologous
IL_4V9F_015
IL_59302.1
IL_3OW2_0181/0/558:561,
1/0/596:599		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_1JID_002
IL_30621.2
IL_3OW2_0191/0/562:567,
1/0/591:595		Triple sheared related
Not in a motif group		homologous
IL_4V9F_018
IL_64879.2
IL_3OW2_0201/0/567:572,
1/0/585:591		7x6 Sarcin-Ricin; G-bulge
Not in a motif group		geometric
IL_4V9F_019
IL_16458.1
IL_3OW2_0211/0/663:667,
1/0/679:683		AAA cross-strand stack
Not in a motif group		homologous
IL_4V9F_020
IL_17136.1
IL_3OW2_0221/0/699:702,
1/0/726:727		Multiple bulged bases
Not in a motif group		homologous
IL_4V9F_021
IL_76389.1
IL_3OW2_0231/0/705:709,
1/0/719:723		tSH-tHW-tHS
Not in a motif group		homologous
IL_4V9F_022
IL_17136.1
IL_3OW2_0321/0/936:941,
1/0/1025:1034		Kink-turn
Not in a motif group		geometric
IL_6HCT_001
IL_64900.1
IL_3OW2_0331/0/942:944,
1/0/1023:1024		Single bulged A
Not in a motif group		homologous
IL_4V9F_032
IL_37497.2
IL_3OW2_0391/0/1101:1108,
1/0/1254:1255		SSU/LSU pseudoknot
Not in a motif group		geometric
IL_4V9F_038
IL_15861.7
IL_3OW2_0401/0/1108:1110,
1/0/1253:1254		Single bulged U
Not in a motif group		homologous
IL_4V9F_039
IL_83039.13
IL_3OW2_0411/0/1115:1121,
1/0/1243:1248		No text annotation
Not in a motif group		homologous
IL_4V9F_040
IL_57188.3
IL_3OW2_0421/0/1136:1138,
1/0/1225:1226		Single bulged G
Not in a motif group		homologous
IL_4V9F_041
IL_00225.2
IL_3OW2_0431/0/1147:1155,
1/0/1212:1216		Kink-turn
Not in a motif group		homologous
IL_4V9F_042
IL_90538.4
IL_3OW2_0461/0/1269:1270,
1/0/1286:1289		No text annotation
Not in a motif group		homologous
IL_4V9F_045
IL_44546.1
IL_3OW2_0481/0/1303:1305,
1/0/1349:1351		No text annotation
Not in a motif group		geometric
IL_4V9F_047
IL_95997.1
IL_3OW2_0501/0/1367:1373,
1/0/2052:2057		7x6 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_4V9F_049
IL_76042.2
IL_3OW2_0781/0/2279:2280,
1/0/2290:2292		Single bulged A
Not in a motif group		homologous
IL_4V9F_079
IL_37497.2
IL_3OW2_0801/0/2436:2438,
1/0/2454:2455		Single stack bend
Not in a motif group		homologous
IL_4V9F_081
IL_76488.2
IL_3OW2_0821/0/2489:2490,
1/0/2531:2533		Major groove platform
Not in a motif group		homologous
IL_4V9F_082
IL_27635.1
IL_3OW2_0841/0/2494:2496,
1/0/2524:2528		Major groove minor groove platform with extra cWW
Not in a motif group		geometric
IL_4V9F_084
IL_92788.2
IL_3OW2_0851/0/2501:2505,
1/0/2515:2519		Triple sheared
Not in a motif group		homologous
IL_4V9F_085
IL_56467.8
IL_3OW2_0911/0/2672:2676,
1/0/2809:2817		No text annotation
Not in a motif group		geometric
IL_5J7L_345
IL_04638.1
IL_3OW2_0961/0/2772:2777,
1/0/2797:2802		UAA/GAN with extra cWW
Not in a motif group		homologous
IL_4V9F_096
IL_49767.5
IL_3OW2_1011/9/3015:3016,
1/9/3064:3066		Major groove intercalation
Not in a motif group		homologous
IL_4V9F_101
IL_37497.2

Problematic loops

#loop idProblemSequence
IL_3OW2_001Triple sheared with non-canonical cWW
IL_3OW2_002Single bulged A
IL_3OW2_003Major groove platform with extra cWW
IL_3OW2_005Single stack bend
IL_3OW2_0077x6 Sarcin-Ricin; G-bulge
IL_3OW2_008Major groove platform; stack outside cWW
IL_3OW2_009No text annotation
IL_3OW2_010Single bulged G
IL_3OW2_011No text annotation
IL_3OW2_0138x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
IL_3OW2_014Single bulged U
IL_3OW2_017No text annotation
IL_3OW2_024No text annotation
IL_3OW2_025tHW-tHW cross-strand stack
IL_3OW2_026Single bulged A
IL_3OW2_027Single bulged G
IL_3OW2_028Triple sheared
IL_3OW2_029Major groove platform with extra cWW
IL_3OW2_030Single bulged U
IL_3OW2_031Multiple bulged bases
IL_3OW2_0345x5 Sarcin-Ricin with intercalated A; G-bulge
IL_3OW2_035Minor groove platform
IL_3OW2_036No text annotation
IL_3OW2_037No text annotation
IL_3OW2_038UAA/GAN
IL_3OW2_044No text annotation
IL_3OW2_045Major groove platform
IL_3OW2_047Isolated cWS basepair
IL_3OW2_049Kink-turn
IL_3OW2_051Major groove platform; stack outside cWW
IL_3OW2_052C-loop
IL_3OW2_053UAA/GAN
IL_3OW2_054No text annotation
IL_3OW2_055No text annotation
IL_3OW2_056tSH-tHW-tHS
IL_3OW2_057tSH-tHH-tHS
IL_3OW2_058No text annotation
IL_3OW2_059Kink-turn
IL_3OW2_060No text annotation
IL_3OW2_061Isolated tWW turn
IL_3OW2_062Major groove platform; stack outside cWW
IL_3OW2_063Intercalated tWH
IL_3OW2_064tSH-tSH-tHH-tHS
IL_3OW2_065Single bulged A
IL_3OW2_066Kink-turn related
IL_3OW2_067Major groove outside cWW, minor groove, intercalation pocket
IL_3OW2_068Major groove outside cWW, minor groove, intercalation pocket
IL_3OW2_069Major groove minor groove platform; mini C-loop
IL_3OW2_070No text annotation
IL_3OW2_071No text annotation
IL_3OW2_072No text annotation
IL_3OW2_073No text annotation
IL_3OW2_074No text annotation
IL_3OW2_075Single bulged U
IL_3OW2_076Minor groove platform
IL_3OW2_077Isolated tHS basepair with bulges
IL_3OW2_079Isolated tHS basepair with bulges
IL_3OW2_081Single stack bend
IL_3OW2_083Major groove platform
IL_3OW2_086Major groove platform
IL_3OW2_087Isolated non-canonical cWW with bulges
IL_3OW2_088Multiple bulged bases
IL_3OW2_089Minor groove platform with intercalation
IL_3OW2_090Single bulged A
IL_3OW2_092Sarcin-Ricin target in LSU H95; G-bulge
IL_3OW2_093C-loop
IL_3OW2_094UAA/GAN
IL_3OW2_095No text annotation
IL_3OW2_097Isolated non-canonical cWW with bulges
IL_3OW2_098Single bulged A
IL_3OW2_099No text annotation
IL_3OW2_100Double sheared
IL_3OW2_102No text annotation
IL_3OW2_103Major groove minor groove platform; mini C-loop
IL_3OW2_104Symmetric double minor groove platform
IL_3OW2_1057x6 Sarcin-Ricin; G-bulge
IL_3OW2_106Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_3OW2_0061/0/1412:1415,
1/0/1680:1686,
1/0/1695:1697		No text annotation
Not in a motif group		homologous
J3_4V9F_006
NA
J3_3OW2_0101/9/3009:3014,
1/9/3067:3071,
1/9/3110:3114		No text annotation
Not in a motif group		homologous
J3_4V9F_010
NA

Problematic loops

#loop idProblemSequence
J3_3OW2_001No text annotation
J3_3OW2_002No text annotation
J3_3OW2_003No text annotation
J3_3OW2_004No text annotation
J3_3OW2_005No text annotation
J3_3OW2_007No text annotation
J3_3OW2_008No text annotation
J3_3OW2_009No text annotation

Coloring options:
Copyright 2024 BGSU RNA group. Page generated in 0.1624 s