Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4KHP_0011/A/13:23No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4KHP_0021/A/78:86No text annotation
Not in a motif group
HL_4KHP_0031/A/153:158GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_35490.1
HL_4KHP_0041/A/187:192No text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_61849.1
HL_4KHP_0051/A/208:212No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_91104.1
HL_4KHP_0061/A/255:263No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4KHP_0071/A/292:297GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_35490.1
HL_4KHP_0081/A/316:329No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4KHP_0091/A/338:343UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_4KHP_0101/A/375:380GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_35490.1
HL_4KHP_0111/A/415:420UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_4KHP_0121/A/453:459No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4KHP_0131/A/506:511No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_91104.1
HL_4KHP_0141/A/601:607No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.3
HL_4KHP_0151/A/673:682No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4KHP_0161/A/710:715Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4KHP_0171/A/770:780No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4KHP_0181/A/822:826No text annotation
Not in a motif group
homologous
HL_4LFB_018
HL_38927.4
HL_4KHP_0191/A/840:845GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_35490.1
HL_4KHP_0201/A/875:880GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_35490.1
HL_4KHP_0211/A/941:950No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4KHP_0221/A/991:996GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_35490.1
HL_4KHP_0231/A/1059:1064GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_35490.1
HL_4KHP_0241/A/1072:1079No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4KHP_0251/A/1111:1126No text annotation
Not in a motif group
HL_4KHP_0261/A/1148:1153GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_35490.1
HL_4KHP_0271/A/1247:1252Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_35490.1
HL_4KHP_0281/A/1296:1305No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4KHP_0291/A/1338:1349No text annotation
Not in a motif group
HL_4KHP_0301/A/1430:1435UNCG
Not in a motif group
homologous
HL_4LFB_031
HL_03562.2
HL_4KHP_0311/A/1493:1498No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4KHP_0011/A/31:33,
1/A/536:537
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.3
IL_4KHP_0021/A/45:46,
1/A/392:394
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.5
IL_4KHP_0031/A/48:53,
1/A/355:357
No text annotation
Not in a motif group
homologous
IL_4LFB_003
IL_14177.1
IL_4KHP_0041/A/55:57,
1/A/352:353
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_42622.3
IL_4KHP_0051/A/64:67,
1/A/97:98
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_4KHP_0061/A/68:70,
1/A/94:96
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_86319.2
IL_4KHP_0071/A/76:78,
1/A/86:88
No text annotation
Not in a motif group
geometric
IL_4P3U_012
IL_86319.2
IL_4KHP_0081/A/123:126,
1/A/227:228
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_4KHP_0091/A/127:131,
1/A/223:226
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4KHP_0101/A/143:148,
1/A/163:169
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_4KHP_0111/A/181:183,
1/A/196:198
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_86319.2
IL_4KHP_0121/A/238:243,
1/A/273:280
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4KHP_0131/A/245:248,
1/A/270:271
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_4KHP_0141/A/288:289,
1/A/300:304
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_4KHP_0151/A/363:365,
1/A/388:389
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.16
IL_4KHP_0161/A/367:371,
1/A/385:386
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_4KHP_0171/A/371:372,
1/A/383:385
Single bulged G
Not in a motif group
homologous
IL_4LFB_016
IL_00225.3
IL_4KHP_0181/A/405:412,
1/A/423:429
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4KHP_0191/A/441:445,
1/A/468:473
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_4KHP_0201/A/445:450,
1/A/462:468
No text annotation
Not in a motif group
geometric
IL_4LFB_019
IL_11882.1
IL_4KHP_0211/A/488:495,
1/A/524:525
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_4KHP_0221/A/499:505,
1/A/512:520
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4KHP_0231/A/553:559,
1/A/858:859
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4KHP_0241/A/564:568,
1/A/741:745
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_4KHP_0251/A/578:580,
1/A/628:629
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.3
IL_4KHP_0261/A/581:582,
1/A/624:627
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.7
IL_4KHP_0271/A/589:596,
1/A/612:617
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_4KHP_0281/A/638:639,
1/A/735:738
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_4KHP_0291/A/641:642,
1/A/731:733
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.3
IL_4KHP_0301/A/646:650,
1/A/724:727
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_4KHP_0311/A/657:662,
1/A/696:701
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.2
IL_4KHP_0321/A/667:672,
1/A/683:691
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4KHP_0331/A/758:762,
1/A/788:789
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_4KHP_0341/A/763:767,
1/A/783:787
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_4KHP_0351/A/865:872,
1/A/883:888
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4KHP_0361/A/900:901,
1/A/1376:1378
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.5
IL_4KHP_0371/A/903:905,
1/A/1373:1374
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.3
IL_4KHP_0381/A/911:913,
1/A/1363:1367
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_4KHP_0391/A/931:932,
1/A/1208:1210
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.3
IL_4KHP_0401/A/971:975,
1/A/1027:1028
Minor groove platform
Not in a motif group
homologous
IL_4LFB_039
IL_47078.1
IL_4KHP_0411/A/978:980,
1/A/1023:1024
No text annotation
Not in a motif group
IL_4KHP_0421/A/980:985,
1/A/1002:1023
No text annotation
Not in a motif group
IL_4KHP_0431/A/1031:1033,
1/A/1190:1191
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.16
IL_4KHP_0441/A/1035:1039,
1/A/1186:1188
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4KHP_0451/A/1040:1041,
1/A/1181:1185
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_88739.2
IL_4KHP_0461/A/1043:1044,
1/A/1177:1179
Single bulged A
Not in a motif group
homologous
IL_5J7L_049
IL_37497.5
IL_4KHP_0471/A/1044:1046,
1/A/1175:1177
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_86319.2
IL_4KHP_0481/A/1106:1111,
1/A/1126:1133
No text annotation
Not in a motif group
IL_4KHP_0491/A/1141:1144,
1/A/1157:1163
No text annotation
Not in a motif group
geometric
IL_4LFB_050
IL_42032.1
IL_4KHP_0501/A/1229:1235,
1/A/1266:1272
No text annotation
Not in a motif group
IL_4KHP_0511/A/1237:1240,
1/A/1259:1264
No text annotation
Not in a motif group
homologous
IL_6CZR_161
IL_75461.4
IL_4KHP_0521/A/1241:1244,
1/A/1255:1258
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.10
IL_4KHP_0531/A/1285:1290,
1/A/1311:1316
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_4KHP_0541/A/1382:1384,
1/A/1479:1482
No text annotation
Not in a motif group
homologous
IL_4LFB_056
NA
IL_4KHP_0551/A/1384:1387,
1/A/1475:1479
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4KHP_0561/A/1388:1390,
1/A/1472:1474
UU cWW
Not in a motif group
geometric
IL_4ZC7_004
IL_86319.2
IL_4KHP_0571/A/1390:1392,
1/A/1469:1472
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.2
IL_4KHP_0581/A/1395:1397,
1/A/1464:1466
No text annotation
Not in a motif group
homologous
IL_4LFB_059
IL_86319.2
IL_4KHP_0591/A/1399:1402,
1/A/1459:1462
Double sheared
Not in a motif group
homologous
IL_4LFB_060
IL_09705.10
IL_4KHP_0601/A/1414:1418,
1/A/1444:1447
UAA/GAN variation
Not in a motif group
homologous
IL_4LFB_062
IL_07235.1
IL_4KHP_0611/A/1418:1420,
1/A/1442:1444
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_86319.2
IL_4KHP_0621/A/1423:1428,
1/A/1437:1439
No text annotation
Not in a motif group
homologous
IL_4LFB_064
IL_92788.2

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4KHP_0011/A/810:813,
1/A/835:839,
1/A/846:852
No text annotation
Not in a motif group
homologous
J3_4LFB_001
NA
J3_4KHP_0021/A/914:917,
1/A/1326:1332,
1/A/1355:1362
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_4KHP_0031/A/921:924,
1/A/1217:1219,
1/A/1319:1322
No text annotation
Not in a motif group
homologous
J3_4LFB_003
NA
J3_4KHP_0041/A/933:940,
1/A/951:962,
1/A/1203:1207
No text annotation
Not in a motif group
J3_4KHP_0051/A/968:971,
1/A/1028:1030,
1/A/1192:1197
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_4KHP_0061/A/1046:1051,
1/A/1090:1096,
1/A/1169:1175
No text annotation
Not in a motif group
J3_4KHP_0071/A/1099:1101,
1/A/1138:1141,
1/A/1163:1166
No text annotation
Not in a motif group
homologous
J3_4LFB_008
NA
J3_4KHP_0081/A/1219:1223,
1/A/1278:1285,
1/A/1316:1319
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA

Problematic loops

No problematic loops


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