4KHP Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4KHP_001 | 1/A/13:23 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
HL_4KHP_002 | 1/A/78:86 | No text annotation Not in a motif group | ||
HL_4KHP_003 | 1/A/153:158 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_85603.1 | |
HL_4KHP_004 | 1/A/187:192 | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_61849.1 | |
HL_4KHP_005 | 1/A/208:212 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_91104.2 | |
HL_4KHP_006 | 1/A/255:263 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.3 | |
HL_4KHP_007 | 1/A/292:297 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
HL_4KHP_008 | 1/A/316:329 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
HL_4KHP_009 | 1/A/338:343 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_29960.1 | |
HL_4KHP_010 | 1/A/375:380 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_85603.1 | |
HL_4KHP_011 | 1/A/415:420 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_29960.1 | |
HL_4KHP_012 | 1/A/453:459 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_85603.1 | |
HL_4KHP_013 | 1/A/506:511 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_91104.2 | |
HL_4KHP_014 | 1/A/601:607 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
HL_4KHP_015 | 1/A/673:682 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.2 | |
HL_4KHP_016 | 1/A/710:715 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.3 | |
HL_4KHP_017 | 1/A/770:780 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
HL_4KHP_018 | 1/A/822:826 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_38927.6 | |
HL_4KHP_019 | 1/A/840:845 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_85603.1 | |
HL_4KHP_020 | 1/A/875:880 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_85603.1 | |
HL_4KHP_021 | 1/A/941:950 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
HL_4KHP_022 | 1/A/991:996 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.1 | |
HL_4KHP_023 | 1/A/1059:1064 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_85603.1 | |
HL_4KHP_024 | 1/A/1072:1079 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
HL_4KHP_025 | 1/A/1111:1126 | No text annotation Not in a motif group | ||
HL_4KHP_026 | 1/A/1148:1153 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_85603.1 | |
HL_4KHP_027 | 1/A/1247:1252 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_85603.1 | |
HL_4KHP_028 | 1/A/1296:1305 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.2 | |
HL_4KHP_029 | 1/A/1338:1349 | No text annotation Not in a motif group | ||
HL_4KHP_030 | 1/A/1430:1435 | UNCG Not in a motif group | homologous HL_4LFB_031 HL_29960.1 | |
HL_4KHP_031 | 1/A/1493:1498 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA |
Problematic loops
No problematic loops
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4KHP_001 | 1/A/31:33, 1/A/536:537 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.4 | |
IL_4KHP_002 | 1/A/45:46, 1/A/392:394 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.7 | |
IL_4KHP_003 | 1/A/48:53, 1/A/355:357 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_14177.1 | |
IL_4KHP_004 | 1/A/55:57, 1/A/352:353 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_80097.2 | |
IL_4KHP_005 | 1/A/64:67, 1/A/97:98 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
IL_4KHP_006 | 1/A/68:70, 1/A/94:96 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.3 | |
IL_4KHP_007 | 1/A/76:78, 1/A/86:88 | No text annotation Not in a motif group | geometric IL_4P3U_012 IL_86319.3 | |
IL_4KHP_008 | 1/A/123:126, 1/A/227:228 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.3 | |
IL_4KHP_009 | 1/A/127:131, 1/A/223:226 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.4 | |
IL_4KHP_010 | 1/A/143:148, 1/A/163:169 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
IL_4KHP_011 | 1/A/181:183, 1/A/196:198 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_86319.3 | |
IL_4KHP_012 | 1/A/238:243, 1/A/273:280 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.3 | |
IL_4KHP_013 | 1/A/245:248, 1/A/270:271 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
IL_4KHP_014 | 1/A/288:289, 1/A/300:304 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
IL_4KHP_015 | 1/A/363:365, 1/A/388:389 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.17 | |
IL_4KHP_016 | 1/A/367:371, 1/A/385:386 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
IL_4KHP_017 | 1/A/371:372, 1/A/383:385 | Single bulged G Not in a motif group | homologous IL_4LFB_016 IL_00225.4 | |
IL_4KHP_018 | 1/A/405:412, 1/A/423:429 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
IL_4KHP_019 | 1/A/441:445, 1/A/468:473 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
IL_4KHP_020 | 1/A/445:450, 1/A/462:468 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
IL_4KHP_021 | 1/A/488:495, 1/A/524:525 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.8 | |
IL_4KHP_022 | 1/A/499:505, 1/A/512:520 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
IL_4KHP_023 | 1/A/553:559, 1/A/858:859 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
IL_4KHP_024 | 1/A/564:568, 1/A/741:745 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.2 | |
IL_4KHP_025 | 1/A/578:580, 1/A/628:629 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.4 | |
IL_4KHP_026 | 1/A/581:582, 1/A/624:627 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.9 | |
IL_4KHP_027 | 1/A/589:596, 1/A/612:617 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
IL_4KHP_028 | 1/A/638:639, 1/A/735:738 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.3 | |
IL_4KHP_029 | 1/A/641:642, 1/A/731:733 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.4 | |
IL_4KHP_030 | 1/A/646:650, 1/A/724:727 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
IL_4KHP_031 | 1/A/657:662, 1/A/696:701 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.2 | |
IL_4KHP_032 | 1/A/667:672, 1/A/683:691 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
IL_4KHP_033 | 1/A/758:762, 1/A/788:789 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
IL_4KHP_034 | 1/A/763:767, 1/A/783:787 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.2 | |
IL_4KHP_035 | 1/A/865:872, 1/A/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
IL_4KHP_036 | 1/A/900:901, 1/A/1376:1378 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.7 | |
IL_4KHP_037 | 1/A/903:905, 1/A/1373:1374 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.4 | |
IL_4KHP_038 | 1/A/911:913, 1/A/1363:1367 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
IL_4KHP_039 | 1/A/931:932, 1/A/1208:1210 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.5 | |
IL_4KHP_040 | 1/A/971:975, 1/A/1027:1028 | Minor groove platform Not in a motif group | homologous IL_4LFB_039 IL_47078.1 | |
IL_4KHP_041 | 1/A/978:980, 1/A/1023:1024 | No text annotation Not in a motif group | ||
IL_4KHP_042 | 1/A/980:985, 1/A/1002:1023 | No text annotation Not in a motif group | ||
IL_4KHP_043 | 1/A/1031:1033, 1/A/1190:1191 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.17 | |
IL_4KHP_044 | 1/A/1035:1039, 1/A/1186:1188 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
IL_4KHP_045 | 1/A/1040:1041, 1/A/1181:1185 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_80097.2 | |
IL_4KHP_046 | 1/A/1043:1044, 1/A/1177:1179 | Single bulged A Not in a motif group | homologous IL_5J7L_049 IL_37497.7 | |
IL_4KHP_047 | 1/A/1044:1046, 1/A/1175:1177 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_86319.3 | |
IL_4KHP_048 | 1/A/1106:1111, 1/A/1126:1133 | No text annotation Not in a motif group | ||
IL_4KHP_049 | 1/A/1141:1144, 1/A/1157:1163 | No text annotation Not in a motif group | geometric IL_4LFB_050 IL_42032.1 | |
IL_4KHP_050 | 1/A/1229:1235, 1/A/1266:1272 | No text annotation Not in a motif group | ||
IL_4KHP_051 | 1/A/1237:1240, 1/A/1259:1264 | No text annotation Not in a motif group | homologous IL_6CZR_161 IL_75461.4 | |
IL_4KHP_052 | 1/A/1241:1244, 1/A/1255:1258 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.11 | |
IL_4KHP_053 | 1/A/1285:1290, 1/A/1311:1316 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
IL_4KHP_054 | 1/A/1382:1384, 1/A/1479:1482 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
IL_4KHP_055 | 1/A/1384:1387, 1/A/1475:1479 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
IL_4KHP_056 | 1/A/1388:1390, 1/A/1472:1474 | UU cWW Not in a motif group | geometric IL_4ZC7_004 IL_86319.3 | |
IL_4KHP_057 | 1/A/1390:1392, 1/A/1469:1472 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.2 | |
IL_4KHP_058 | 1/A/1395:1397, 1/A/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_86319.3 | |
IL_4KHP_059 | 1/A/1399:1402, 1/A/1459:1462 | Double sheared Not in a motif group | homologous IL_4LFB_060 IL_09705.11 | |
IL_4KHP_060 | 1/A/1414:1418, 1/A/1444:1447 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.2 | |
IL_4KHP_061 | 1/A/1418:1420, 1/A/1442:1444 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_86319.3 | |
IL_4KHP_062 | 1/A/1423:1428, 1/A/1437:1439 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.3 |
Problematic loops
No problematic loops
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4KHP_001 | 1/A/810:813, 1/A/835:839, 1/A/846:852 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
J3_4KHP_002 | 1/A/914:917, 1/A/1326:1332, 1/A/1355:1362 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
J3_4KHP_003 | 1/A/921:924, 1/A/1217:1219, 1/A/1319:1322 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
J3_4KHP_004 | 1/A/933:940, 1/A/951:962, 1/A/1203:1207 | No text annotation Not in a motif group | ||
J3_4KHP_005 | 1/A/968:971, 1/A/1028:1030, 1/A/1192:1197 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
J3_4KHP_006 | 1/A/1046:1051, 1/A/1090:1096, 1/A/1169:1175 | No text annotation Not in a motif group | ||
J3_4KHP_007 | 1/A/1099:1101, 1/A/1138:1141, 1/A/1163:1166 | No text annotation Not in a motif group | homologous J3_4LFB_008 NA | |
J3_4KHP_008 | 1/A/1219:1223, 1/A/1278:1285, 1/A/1316:1319 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
No problematic loops
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