4DV2 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/A/30:32,1/A/552:553 | NA | NA |
| 2 | ➜ | 1/A/44:45,1/A/396:398 | NA | NA |
| 3 | ➜ | 1/A/47:52,1/A/359:361 | NA | NA |
| 4 | ➜ | 1/A/54:56,1/A/356:357 | NA | NA |
| 5 | ➜ | 1/A/63:66,1/A/103:104 | NA | NA |
| 6 | ➜ | 1/A/67:69,1/A/99:102 | NA | NA |
| 7 | ➜ | 1/A/70:78,1/A/91:98 | NA | NA |
| 8 | ➜ | 1/A/129:131,1/A/231:232 | NA | NA |
| 9 | ➜ | 1/A/132:136,1/A/227:230 | NA | NA |
| 10 | ➜ | 1/A/148:153,1/A/168:174 | NA | NA |
| 11 | ➜ | 1/A/185:188,1/A/190K:192 | NA | NA |
| 12 | ➜ | 1/A/242:247,1/A/277:284 | NA | NA |
| 13 | ➜ | 1/A/249:252,1/A/274:275 | NA | NA |
| 14 | ➜ | 1/A/292:293,1/A/304:308 | NA | NA |
| 15 | ➜ | 1/A/367:369,1/A/392:393 | NA | NA |
| 16 | ➜ | 1/A/371:375,1/A/389:390 | NA | NA |
| 17 | ➜ | 1/A/375:376,1/A/387:389 | NA | NA |
| 18 | ➜ | 1/A/409:416,1/A/427:433 | NA | NA |
| 19 | ➜ | 1/A/446:450,1/A/483:488 | NA | NA |
| 20 | ➜ | 1/A/450:455,1/A/477:483 | NA | NA |
| 21 | ➜ | 1/A/504:511,1/A/540:541 | NA | NA |
| 22 | ➜ | 1/A/515:521,1/A/528:536 | NA | NA |
| 23 | ➜ | 1/A/569:575,1/A/880:881 | NA | NA |
| 24 | ➜ | 1/A/580:584,1/A/757:761 | NA | NA |
| 25 | ➜ | 1/A/594:596,1/A/644:645 | NA | NA |
| 26 | ➜ | 1/A/597:598,1/A/640:643 | NA | NA |
| 27 | ➜ | 1/A/605:612,1/A/628:633 | NA | NA |
| 28 | ➜ | 1/A/654:655,1/A/751:754 | NA | NA |
| 29 | ➜ | 1/A/657:658,1/A/747:749 | NA | NA |
| 30 | ➜ | 1/A/662:666,1/A/740:743 | NA | NA |
| 31 | ➜ | 1/A/673:678,1/A/712:717 | NA | NA |
| 32 | ➜ | 1/A/683:688,1/A/699:707 | NA | NA |
| 33 | ➜ | 1/A/774:778,1/A/804:805 | NA | NA |
| 34 | ➜ | 1/A/779:783,1/A/799:803 | NA | NA |
| 35 | ➜ | 1/A/887:894,1/A/905:910 | NA | NA |
| 36 | ➜ | 1/A/922:923,1/A/1393:1395 | NA | NA |
| 37 | ➜ | 1/A/925:927,1/A/1390:1391 | NA | NA |
| 38 | ➜ | 1/A/933:935,1/A/1380:1384 | NA | NA |
| 39 | ➜ | 1/A/948:950,1/A/1231:1233 | NA | NA |
| 40 | ➜ | 1/A/953:954,1/A/1226:1228 | NA | NA |
| 41 | ➜ | 1/A/1009:1012,1/A/1017:1020 | NA | NA |
| 42 | ➜ | 1/A/1048:1050,1/A/1208:1209 | NA | NA |
| 43 | ➜ | 1/A/1050:1056,1/A/1204:1208 | NA | NA |
| 44 | ➜ | 1/A/1056:1058,1/A/1199:1204 | NA | NA |
| 45 | ➜ | 1/A/1060:1061,1/A/1195:1197 | NA | NA |
| 46 | ➜ | 1/A/1061:1063,1/A/1193:1195 | NA | NA |
| 47 | ➜ | 1/A/1124:1128,1/A/1143:1149 | NA | NA |
| 48 | ➜ | 1/A/1128:1133,1/A/1141:1143 | NA | NA |
| 49 | ➜ | 1/A/1247:1253,1/A/1284:1290 | NA | NA |
| 50 | ➜ | 1/A/1255:1259,1/A/1276:1282 | NA | NA |
| 51 | ➜ | 1/A/1259:1260,1/A/1274:1276 | NA | NA |
| 52 | ➜ | 1/A/1260:1262,1/A/1273:1274 | NA | NA |
| 53 | ➜ | 1/A/1303:1309,1/A/1328:1334 | NA | NA |
| 54 | ➜ | 1/A/1401:1405,1/A/1496:1501 | NA | NA |
| 55 | ➜ | 1/A/1405:1410,1/A/1490:1496 | NA | NA |
| 56 | ➜ | 1/A/1411:1416,1/A/1484:1489 | NA | NA |
| 57 | ➜ | 1/A/1416:1420,1/A/1480:1484 | NA | NA |
| 58 | ➜ | 1/A/1424:1427,1/A/1473:1476 | NA | NA |
| 59 | ➜ | 1/A/1431:1435,1/A/1466:1469 | NA | NA |
| 60 | ➜ | 1/A/1435:1437,1/A/1464:1466 | NA | NA |
| 61 | ➜ | 1/A/1440:1447,1/A/1459:1461 | NA | NA |
Problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/A/12:22 | NA | NA |
| 2 | ➜ | 1/A/78:91 | NA | NA |
| 3 | ➜ | 1/A/158:163 | NA | NA |
| 4 | ➜ | 1/A/190B:190G | NA | NA |
| 5 | ➜ | 1/A/201:216 | NA | NA |
| 6 | ➜ | 1/A/259:267 | NA | NA |
| 7 | ➜ | 1/A/296:301 | NA | NA |
| 8 | ➜ | 1/A/320:333 | NA | NA |
| 9 | ➜ | 1/A/342:347 | NA | NA |
| 10 | ➜ | 1/A/379:384 | NA | NA |
| 11 | ➜ | 1/A/419:424 | NA | NA |
| 12 | ➜ | 1/A/458:474 | NA | NA |
| 13 | ➜ | 1/A/521:528 | NA | NA |
| 14 | ➜ | 1/A/617:623 | NA | NA |
| 15 | ➜ | 1/A/689:698 | NA | NA |
| 16 | ➜ | 1/A/726:731 | NA | NA |
| 17 | ➜ | 1/A/786:796 | NA | NA |
| 18 | ➜ | 1/A/838:848 | NA | NA |
| 19 | ➜ | 1/A/862:867 | NA | NA |
| 20 | ➜ | 1/A/897:902 | NA | NA |
| 21 | ➜ | 1/A/963:972 | NA | NA |
| 22 | ➜ | 1/A/1012:1017 | NA | NA |
| 23 | ➜ | 1/A/1027:1034 | NA | NA |
| 24 | ➜ | 1/A/1076:1081 | NA | NA |
| 25 | ➜ | 1/A/1089:1096 | NA | NA |
| 26 | ➜ | 1/A/1134:1140 | NA | NA |
| 27 | ➜ | 1/A/1165:1171 | NA | NA |
| 28 | ➜ | 1/A/1265:1270 | NA | NA |
| 29 | ➜ | 1/A/1314:1323 | NA | NA |
| 30 | ➜ | 1/A/1356:1366 | NA | NA |
| 31 | ➜ | 1/A/1449:1454 | NA | NA |
| 32 | ➜ | 1/A/1514:1521 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/A/826:829,1/A/857:861,1/A/868:874 | NA | NA |
| 2 | ➜ | 1/A/943:946,1/A/1235:1237,1/A/1337:1340 | NA | NA |
| 3 | ➜ | 1/A/955:962,1/A/973:985,1/A/1220:1225 | NA | NA |
| 4 | ➜ | 1/A/990:999,1/A/1042:1047,1/A/1210:1215 | NA | NA |
| 5 | ➜ | 1/A/1001:1008,1/A/1021:1027,1/A/1034:1040 | NA | NA |
| 6 | ➜ | 1/A/1063:1068,1/A/1107:1113,1/A/1187:1193 | NA | NA |
| 7 | ➜ | 1/A/1116:1118,1/A/1155:1161,1/A/1175:1184 | NA | NA |
| 8 | ➜ | 1/A/1237:1241,1/A/1296:1303,1/A/1334:1337 | NA | NA |
| 9 | ➜ | 1/A/46:47,1/A/361:367,1/A/393:395 | NA | NA |
| 10 | ➜ | 1/A/586:588,1/A/651:654,1/A/754:755 | NA | NA |
| 11 | ➜ | 1/A/672:673,1/A/717:725,1/A/732:734 | NA | NA |
| 12 | ➜ | 1/A/1073:1074,1/A/1083:1087,1/A/1098:1102 | NA | NA |
Problematic loops
No problematic loops
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